GWAS603554_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS603554_H (platelet crit QTL GWAS603554 (human)) Homo sapiens

Symbol: GWAS603554_H
Name: platelet crit QTL GWAS603554 (human)
RGD ID: 406954578
Trait: platelet crit
Measurement Type: plateletcrit   (CMO:0001349)    
LOD Score: Not Available
P Value: 9.0E-42
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh383184,365,748 - 184,365,749RGD_MAPPER_PIPELINEGRCh38
GRCh373184,083,536 - 184,083,537RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model



Experimental Data Annotations    Click to see Annotation Detail View

Clinical Measurement
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS603554_HHumanplateletcrit  IAGPrs75389224405850206Based on the EFO term IDGWAS_CATALOGPMID:27863252

Experimental Factor Annotations    Click to see Annotation Detail View
Object SymbolSpeciesTermQualifierEvidenceWithReferenceNotesSourceOriginal Reference(s)
GWAS603554_HHumanplatelet crit  IAGPrs75389224405850206 GWAS_CATALOGPMID:27863252
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement
plateletcrit  (IAGP)

References

References - curated
# Reference Title Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1314889POLR2HRNA polymerase II, I and III subunit H3184361710184368591Human

Position Markers

Peak: (rs75389224)
Human AssemblyChrPosition (strand)Source
GRCh383184,365,748 - 184,365,749RGD_MAPPER_PIPELINE


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
406954578GWAS603554_Hplatelet crit QTL GWAS603554 (human)9e-42platelet critplateletcrit (CMO:0001349)3184365748184365749Human


Additional Information

GWAS QTLs Related by Peak Marker
Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL GWAS Catalog Study Disease Trait Study Size Risk Allele Risk Allele Frequency P Value P Value MLOG Peak Marker Reported Odds Ratio or Beta-coefficient Ontology Accession PubMed
GWAS603554_H GCST004607 Plateletcrit 164,339 European ancestry individuals T 0.1207 9E-42 41.046 rs75389224 0.07660589 platelet crit (EFO:0007985)
 PMID:27863252
Database Acc Id Source(s)
GWAS Catalog GCST004607 GWAS Catalog

RGD Curation Notes
Note Type Note Reference