AGTPBP1 (ATP/GTP binding carboxypeptidase 1) - Rat Genome Database

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Gene: AGTPBP1 (ATP/GTP binding carboxypeptidase 1) Homo sapiens
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Symbol: AGTPBP1
Name: ATP/GTP binding carboxypeptidase 1
RGD ID: 1314853
HGNC Page HGNC:17258
Description: Enables metallocarboxypeptidase activity. Involved in C-terminal protein deglutamylation and protein side chain deglutamylation. Located in several cellular components, including microtubule organizing center; nucleoplasm; and plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AL353743.2; ATP/GTP binding protein 1; ATP/GTP-binding protein 1; carboxypeptidase-tubulin; CCP1; CONDCA; cytosolic carboxypeptidase 1; DKFZp686M20191; KIAA1035; LOC102724057; nervous system nuclear protein induced by axotomy; nervous system nuclear protein induced by axotomy protein 1 homolog; NNA1; soluble carboxypeptidase; tubulinyl-Tyr carboxypeptidase; tyrosine carboxypeptidase; uncharacterized LOC102724057
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38985,546,539 - 85,805,483 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl985,546,539 - 85,742,029 (-)EnsemblGRCh38hg38GRCh38
GRCh37988,161,454 - 88,356,944 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36987,351,275 - 87,546,709 (-)NCBINCBI36Build 36hg18NCBI36
Build 34985,391,008 - 85,586,443NCBI
Celera958,731,693 - 58,927,167 (-)NCBICelera
Cytogenetic Map9q21.33NCBI
HuRef957,985,670 - 58,181,366 (-)NCBIHuRef
CHM1_1988,308,168 - 88,503,654 (-)NCBICHM1_1
T2T-CHM13v2.0997,697,026 - 97,955,976 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
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Term
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Original Reference(s)
AGTPBP1HumanChildhood-Onset Neurodegeneration with Cerebellar Atrophy  IAGPRGD:126744916|RGD:126744923|RGD:126744927|RGD:150413098|RGD:150548116|RGD:243056005|RGD:243056901|RGD:243063209|RGD:243063210|RGD:401797820|RGD:401856258|RGD:404999544|RGD:405710760|RGD:407460114|RGD:40815678|RGD:40815679|RGD:40886526|RGD:596945908|RGD:597834404|RGD:597834407|RGD:5978344108554872ClinVar Annotator: match by term: Neurodegeneration, childhood-onset, with cerebellar atrophyClinVarPMID:25741868
AGTPBP1HumanChildhood-Onset Neurodegeneration with Cerebellar Atrophy  IAGPRGD:14349830|RGD:14349834|RGD:143498428554872ClinVar Annotator: match by term: Neurodegeneration, childhood-onset, with cerebellar atrophyClinVarPMID:30420557
AGTPBP1HumanChildhood-Onset Neurodegeneration with Cerebellar Atrophy  IAGPRGD:143498328554872ClinVar Annotator: match by term: Neurodegeneration, childhood-onset, with cerebellar atrophyClinVarPMID:25741868|PMID:30420557|PMID:33624935
AGTPBP1HumanChildhood-Onset Neurodegeneration with Cerebellar Atrophy  IAGPRGD:13528411|RGD:13528413|RGD:14349837|RGD:143498398554872ClinVar Annotator: match by term: Neurodegeneration, childhood-onset, with cerebellar atrophyClinVarPMID:25741868|PMID:30420557
AGTPBP1HumanDevelopmental Disabilities  IAGPRGD:14399653|RGD:14399654|RGD:146988058554872ClinVar Annotator: match by term: Global developmental delayClinVar 
AGTPBP1Humangenetic disease  IAGPRGD:150536662|RGD:155911124|RGD:155922029|RGD:155922776|RGD:155945569|RGD:155972132|RGD:155987741|RGD:155997817|RGD:156001355|RGD:156003047|RGD:156012606|RGD:156042826|RGD:156063206|RGD:156085451|RGD:156125887|RGD:156132085|RGD:156142222|RGD:156162010|RGD:156168501|RGD:156174141|RGD:156202432|RGD:156239050|RGD:156261542|RGD:156262510|RGD:156376359|RGD:329356557|RGD:329385037|RGD:401721621|RGD:401773366|RGD:401884146|RGD:405270572|RGD:405782674|RGD:405782867|RGD:405782893|RGD:405782905|RGD:405782955|RGD:405782984|RGD:405783020|RGD:405783094|RGD:405783115|RGD:405783177|RGD:405783258|RGD:405783311|RGD:405783356|RGD:405783411|RGD:405783517|RGD:405783550|RGD:405783581|RGD:407499406|RGD:407499428|RGD:407499446|RGD:407499464|RGD:597667314|RGD:597667321|RGD:597667325|RGD:597667330|RGD:597667337|RGD:597667344|RGD:597667350|RGD:597667402|RGD:597667409|RGD:597667415|RGD:597667419|RGD:597667424|RGD:597667446|RGD:597667452|RGD:597667456|RGD:597667462|RGD:5976674658554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVar 
AGTPBP1HumanNEURODEVELOPMENTAL DISORDER WITH CEREBELLAR ATROPHY AND WITH OR WITHOUT SEIZURES  IAGPRGD:14349837|RGD:385974448554872ClinVar Annotator: match by term: Neurodevelopmental disorder with cerebellar atrophy and with or without seizuresClinVarPMID:25741868|PMID:30420557
Object Symbol
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Original Reference(s)
AGTPBP1HumanNerve Degeneration  EXP 11554173CTD Direct Evidence: marker/mechanismCTDPMID:16952463
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Original Reference(s)
AGTPBP1Humanretinitis pigmentosa  ISSRGD:131485413592920OMIM:268000MouseDO 
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Original Reference(s)
AGTPBP1HumanChildhood-Onset Neurodegeneration with Cerebellar Atrophy  IAGP 7240710 OMIM 

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Original Reference(s)
AGTPBP1Human(+)-schisandrin B multiple interactionsISORGD:13063076480464schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of AGTPBP1 mRNA]CTDPMID:31150632
AGTPBP1Human1-naphthyl isothiocyanate increases expressionISORGD:130630764804641-Naphthylisothiocyanate results in increased expression of AGTPBP1 mRNACTDPMID:30723492
AGTPBP1Human17alpha-ethynylestradiol affects expressionISORGD:13148546480464Ethinyl Estradiol affects the expression of AGTPBP1 mRNACTDPMID:17555576
AGTPBP1Human17beta-estradiol decreases expressionISORGD:13063076480464Estradiol results in decreased expression of AGTPBP1 mRNACTDPMID:32145629
AGTPBP1Human2-methoxyethanol increases expressionISORGD:13063076480464methyl cellosolve results in increased expression of AGTPBP1 mRNACTDPMID:21061450
AGTPBP1Human3,4-methylenedioxymethamphetamine decreases expressionISORGD:13148546480464N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of AGTPBP1 mRNACTDPMID:26251327
AGTPBP1Human3H-1,2-dithiole-3-thione increases expressionISORGD:130630764804641,2-dithiol-3-thione results in increased expression of AGTPBP1 mRNACTDPMID:19162173
AGTPBP1Human4-hydroxyphenyl retinamide decreases expressionISORGD:13148546480464Fenretinide results in decreased expression of AGTPBP1 mRNACTDPMID:28973697
AGTPBP1Human6-propyl-2-thiouracil increases expressionISORGD:13063076480464Propylthiouracil results in increased expression of AGTPBP1 mRNACTDPMID:22504374|PMID:36843608
AGTPBP1Human6-propyl-2-thiouracil increases methylationISORGD:13063076480464Propylthiouracil results in increased methylation of AGTPBP1 geneCTDPMID:37926403
AGTPBP1Human6-propyl-2-thiouracil decreases expressionISORGD:13063076480464Propylthiouracil results in decreased expression of AGTPBP1 mRNACTDPMID:37926403
AGTPBP1Humanacetamide increases expressionISORGD:13063076480464acetamide results in increased expression of AGTPBP1 mRNACTDPMID:31881176
AGTPBP1Humanaflatoxin B1 increases expressionISORGD:13063076480464Aflatoxin B1 results in increased expression of AGTPBP1 mRNACTDPMID:23630614|PMID:25378103
AGTPBP1Humanaflatoxin B1 increases expressionISORGD:13148546480464Aflatoxin B1 results in increased expression of AGTPBP1 mRNACTDPMID:19770486
AGTPBP1Humanaflatoxin M1 decreases expressionEXP 6480464Aflatoxin M1 results in decreased expression of AGTPBP1 mRNACTDPMID:30928695
AGTPBP1Humanall-trans-retinoic acid increases expressionEXP 6480464Tretinoin results in increased expression of AGTPBP1 mRNACTDPMID:23724009|PMID:33167477
AGTPBP1Humanalpha-Zearalanol multiple interactionsISORGD:13063076480464[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of AGTPBP1 mRNACTDPMID:35163327
AGTPBP1Humanaristolochic acid A decreases expressionEXP 6480464aristolochic acid I results in decreased expression of AGTPBP1 mRNACTDPMID:33212167
AGTPBP1Humanarsane affects methylationEXP 6480464Arsenic affects the methylation of AGTPBP1 geneCTDPMID:25304211
AGTPBP1Humanarsenic atom affects methylationEXP 6480464Arsenic affects the methylation of AGTPBP1 geneCTDPMID:25304211

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Biological Process
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Original Reference(s)
AGTPBP1Humanadult walking behavior acts_upstream_of_or_withinIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humananterograde axonal transport of mitochondrion acts_upstream_of_or_withinIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humanaxonal transport acts_upstream_of_or_withinIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1HumanC-terminal protein deglutamylation involved_inIDA 150520179 PMID:22170066UniProtPMID:22170066
AGTPBP1HumanC-terminal protein deglutamylation involved_inISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
AGTPBP1Humancentral nervous system neuron development acts_upstream_of_or_withinIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humancerebellar Purkinje cell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humancerebellar Purkinje cell differentiation involved_inISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
AGTPBP1Humancerebellar Purkinje cell layer development acts_upstream_of_or_withinIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humancerebellum development acts_upstream_of_or_withinIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humaneye photoreceptor cell differentiation involved_inISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
AGTPBP1Humaneye photoreceptor cell differentiation involved_inIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humanmitochondrion organization involved_inISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
AGTPBP1Humanmitochondrion organization involved_inIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humannegative regulation of cell population proliferation acts_upstream_of_or_withinIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humanneuromuscular process involved_inISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
AGTPBP1Humanneuromuscular process acts_upstream_of_or_withinISOMGI:1094829068941 PMID:10630211MGIPMID:10630211
AGTPBP1Humanneuromuscular process involved_inIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humanolfactory bulb development involved_inIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humanolfactory bulb development involved_inISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
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Cellular Component
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Original Reference(s)
AGTPBP1Humanaxon located_inIEAGO:0098930150520179 GOCGO_REF:0000108
AGTPBP1Humanaxon cytoplasm located_inIEAGO:0098957150520179 GOCGO_REF:0000108
AGTPBP1Humancentriolar satellite located_inIDA 150520179 HPAGO_REF:0000052
AGTPBP1Humanciliary basal body located_inIDA 150520179 HPAGO_REF:0000052
AGTPBP1Humancilium located_inIDA 150520179 HPAGO_REF:0000052
AGTPBP1Humancytoplasm located_inIEAUniProtKB-KW:KW-0963150520179 UniProtGO_REF:0000043
AGTPBP1Humancytoplasm located_inIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humancytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044
AGTPBP1Humancytoplasm is_active_inIBAFB:FBgn0265726|MGI:1918244|MGI:2159437|MGI:2441745|MGI:2443254|PANTHER:PTN007589887|UniProtKB:Q583K9|UniProtKB:Q5VU57|UniProtKB:Q8NDL9|UniProtKB:Q9UPW5150520179 GO_CentralGO_REF:0000033
AGTPBP1Humancytoplasm located_inIDA 150520179 PMID:23085998UniProtPMID:23085998
AGTPBP1Humancytosol located_inISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
AGTPBP1Humancytosol located_inIEAUniProtKB-SubCell:SL-0091150520179 UniProtGO_REF:0000044
AGTPBP1Humancytosol located_inIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humanmicrotubule cytoskeleton is_active_inIBAPANTHER:PTN007589887|UniProtKB:Q5U5Z8|UniProtKB:Q5VU57|UniProtKB:Q8NDL9150520179 GO_CentralGO_REF:0000033
AGTPBP1Humanmitochondrion located_inIEAUniProtKB-KW:KW-0496150520179 UniProtGO_REF:0000043
AGTPBP1Humanmitochondrion located_inIEAUniProtKB-SubCell:SL-0173150520179 UniProtGO_REF:0000044
AGTPBP1Humanmitochondrion located_inISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
AGTPBP1Humanmitochondrion located_inIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humannucleoplasm located_inIDA 150520179 HPAGO_REF:0000052
AGTPBP1Humannucleus is_active_inIBAMGI:2159437|PANTHER:PTN002654088|UniProtKB:Q9UPW5150520179 GO_CentralGO_REF:0000033
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Molecular Function
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Original Reference(s)
AGTPBP1Humancarboxypeptidase activity enablesIEAUniProtKB-KW:KW-0121150520179 UniProtGO_REF:0000043
AGTPBP1Humanhydrolase activity enablesIEAUniProtKB-KW:KW-0378150520179 UniProtGO_REF:0000043
AGTPBP1Humanmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
AGTPBP1Humanmetallocarboxypeptidase activity enablesISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
AGTPBP1Humanmetallocarboxypeptidase activity enablesIBAMGI:1918244|MGI:1923473|MGI:2159437|MGI:2441745|MGI:2443254|MGI:3646469|PANTHER:PTN007589887|UniProtKB:Q8NEM8|UniProtKB:Q9UPW5|WB:WBGene00017136150520179 GO_CentralGO_REF:0000033
AGTPBP1Humanmetallocarboxypeptidase activity enablesIDA 150520179 PMID:22170066UniProtPMID:22170066
AGTPBP1Humanmetallocarboxypeptidase activity enablesIEAInterPro:IPR000834|InterPro:IPR033852150520179 InterProGO_REF:0000002
AGTPBP1Humanmetallocarboxypeptidase activity enablesIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humanmetallopeptidase activity enablesIEAUniProtKB-KW:KW-0482150520179 UniProtGO_REF:0000043
AGTPBP1Humanpeptidase activity enablesIEAUniProtKB-KW:KW-0645150520179 UniProtGO_REF:0000043
AGTPBP1Humanprotein binding enablesISOUniProtKB:Q6PDN39068941 PMID:21074048UniProtPMID:21074048
AGTPBP1Humantubulin binding enablesIBAMGI:1918244|MGI:2159437|MGI:2441745|MGI:3646469|PANTHER:PTN007589887150520179 GO_CentralGO_REF:0000033
AGTPBP1Humantubulin binding enablesIEAUniProtKB:Q641K1|ensembl:ENSMUSP00000022040150520179 EnsemblGO_REF:0000107
AGTPBP1Humantubulin binding enablesISSUniProtKB:Q641K1150520179 UniProtGO_REF:0000024
AGTPBP1Humanzinc ion binding enablesIEAInterPro:IPR000834150520179 InterProGO_REF:0000002
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Object Symbol
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Qualifier
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Reference
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Source
Original Reference(s)
AGTPBP1HumanAbsent speech  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanAplasia/Hypoplasia of the cerebellum  IAGP 8699517 HPOORPHA:2254
AGTPBP1HumanArthrogryposis multiplex congenita  IAGP 8699517 HPOORPHA:2254
AGTPBP1HumanAtaxia  IAGP 8699517 HPOORPHA:2254
AGTPBP1HumanAtaxia  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanCerebellar atrophy  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanCerebellar cyst  IAGP 8699517 HPOORPHA:2254
AGTPBP1HumanCerebral cortical atrophy  IAGP 8699517 HPOORPHA:2254
AGTPBP1HumanChildhood onset  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanCongenital laryngeal stridor  IAGP 8699517 HPOORPHA:2254
AGTPBP1HumanCongenital onset  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanDegeneration of anterior horn cells  IAGP 8699517 HPOORPHA:2254
AGTPBP1HumanDevelopmental regression  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanDysplastic corpus callosum  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanDystonia  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanEsotropia  IAGP 8699517 HPOORPHA:2254
AGTPBP1HumanFailure to thrive  IAGP 8699517 HPOORPHA:2254
AGTPBP1HumanFailure to thrive  IAGP 8699517 HPOMIM:618276|PMID:30420557
AGTPBP1HumanFeeding difficulties  IAGP 8699517 HPOORPHA:2254
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Object Symbol
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Original Reference(s)
AGTPBP1HumanGlobal developmental delay  IAGPRGD:143996548554872ClinVar Annotator: match by term: Global developmental delayClinVar 
AGTPBP1HumanGlobal developmental delay  IAGPRGD:146988058554872ClinVar Annotator: match by term: Global developmental delayClinVar 
AGTPBP1HumanGlobal developmental delay  IAGPRGD:143996538554872ClinVar Annotator: match by term: Global developmental delayClinVar 

#
Reference Title
Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:10470851   PMID:11083920   PMID:11884758   PMID:12477932   PMID:14702039   PMID:15146197   PMID:15302935   PMID:15385968   PMID:16344560   PMID:16713569   PMID:17043677   PMID:21873635  
PMID:22170066   PMID:23085998   PMID:23242554   PMID:23414517   PMID:25381060   PMID:25609649   PMID:25659891   PMID:25798074   PMID:26186194   PMID:26638075   PMID:26673895   PMID:27880917  
PMID:28065597   PMID:28190767   PMID:28514442   PMID:29348145   PMID:29511261   PMID:29576527   PMID:30021884   PMID:30420557   PMID:30976113   PMID:31343991   PMID:31753913   PMID:32807901  
PMID:33909173   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34637898   PMID:34672954   PMID:35271311   PMID:35439318   PMID:35914814   PMID:35915203   PMID:35944360   PMID:35973513  
PMID:36215168   PMID:36232890   PMID:36244648   PMID:37071682   PMID:37267103   PMID:37689310   PMID:37827155   PMID:37937809   PMID:39129004  



AGTPBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38985,546,539 - 85,805,483 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl985,546,539 - 85,742,029 (-)EnsemblGRCh38hg38GRCh38
GRCh37988,161,454 - 88,356,944 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36987,351,275 - 87,546,709 (-)NCBINCBI36Build 36hg18NCBI36
Build 34985,391,008 - 85,586,443NCBI
Celera958,731,693 - 58,927,167 (-)NCBICelera
Cytogenetic Map9q21.33NCBI
HuRef957,985,670 - 58,181,366 (-)NCBIHuRef
CHM1_1988,308,168 - 88,503,654 (-)NCBICHM1_1
T2T-CHM13v2.0997,697,026 - 97,955,976 (-)NCBIT2T-CHM13v2.0
Agtpbp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391359,597,348 - 59,705,184 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1359,593,556 - 59,733,041 (-)EnsemblGRCm39 Ensembl
GRCm381359,449,534 - 59,557,370 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1359,445,742 - 59,585,227 (-)EnsemblGRCm38mm10GRCm38
MGSCv371359,550,896 - 59,658,680 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361359,459,518 - 59,566,909 (-)NCBIMGSCv36mm8
Celera1360,505,890 - 60,600,548 (-)NCBICelera
Cytogenetic Map13B2NCBI
cM Map1337.0NCBI
Agtpbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8175,092,108 - 5,244,414 (+)NCBIGRCr8
mRatBN7.2175,120,540 - 5,238,874 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl175,120,609 - 5,238,869 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx175,153,873 - 5,264,101 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0176,694,971 - 6,799,992 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0175,150,307 - 5,260,529 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0175,510,009 - 5,614,416 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl175,511,385 - 5,614,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0177,722,385 - 7,837,764 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41711,040,339 - 11,155,923 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11711,063,063 - 11,155,645 (+)NCBI
Celera175,254,268 - 5,358,824 (+)NCBICelera
Cytogenetic Map17p14NCBI
Agtpbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554321,628,913 - 1,818,454 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554321,628,966 - 1,816,373 (+)NCBIChiLan1.0ChiLan1.0
AGTPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21184,681,031 - 84,876,912 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1984,686,971 - 84,882,852 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0939,161,182 - 39,357,043 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1984,871,571 - 85,049,056 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl984,871,450 - 85,037,897 (-)Ensemblpanpan1.1panPan2
AGTPBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1173,853,491 - 74,030,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl173,887,934 - 74,107,312 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,616,116 - 74,795,461 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0174,158,469 - 74,338,565 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl174,158,416 - 74,336,496 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1173,967,595 - 74,147,352 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0173,736,759 - 73,916,152 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0174,439,370 - 74,619,422 (+)NCBIUU_Cfam_GSD_1.0
Agtpbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947120,497,104 - 120,673,188 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366801,065,937 - 1,240,875 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366801,065,375 - 1,240,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGTPBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1029,440,145 - 29,590,454 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11029,440,150 - 29,590,457 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21033,515,965 - 33,666,698 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGTPBP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11296,342,193 - 96,534,981 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1296,342,759 - 96,534,800 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603884,694,874 - 84,887,676 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Agtpbp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248099,119,951 - 9,339,604 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248099,119,412 - 9,321,226 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in AGTPBP1
128 total Variants

1 to 10 of 179 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000050348] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124532)x3 copy number gain See cases [RCV000053745] Chr9:193412..138124532 [GRCh38]
Chr9:204193..141018984 [GRCh37]
Chr9:194193..140138805 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138114463)x3 copy number gain See cases [RCV000053746] Chr9:193412..138114463 [GRCh38]
Chr9:214367..141008915 [GRCh37]
Chr9:204367..140128736 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|See cases [RCV000053748] Chr9:193412..138179445 [GRCh38]
Chr9:266045..141073897 [GRCh37]
Chr9:256045..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
NM_015239.2(AGTPBP1):c.2308C>T (p.His770Tyr) single nucleotide variant Malignant melanoma [RCV000068726] Chr9:85592700 [GRCh38]
Chr9:88207615 [GRCh37]
Chr9:87397435 [NCBI36]
Chr9:9q21.33
not provided
NM_015239.2(AGTPBP1):c.2862C>T (p.Tyr954=) single nucleotide variant Malignant melanoma [RCV000061966] Chr9:85586882 [GRCh38]
Chr9:88201797 [GRCh37]
Chr9:87391617 [NCBI36]
Chr9:9q21.33
not provided
NM_001286715.1(AGTPBP1):c.3660-10980A>G single nucleotide variant Lung cancer [RCV000108455] Chr9:85558266 [GRCh38]
Chr9:88173181 [GRCh37]
Chr9:9q21.33
uncertain significance
NM_001286715.1(AGTPBP1):c.2171+4479G>A single nucleotide variant Lung cancer [RCV000108456] Chr9:85628183 [GRCh38]
Chr9:88243098 [GRCh37]
Chr9:9q21.33
uncertain significance
NM_001286715.1(AGTPBP1):c.1244-687G>A single nucleotide variant Lung cancer [RCV000108457] Chr9:85647105 [GRCh38]
Chr9:88262020 [GRCh37]
Chr9:9q21.33
uncertain significance
GRCh38/hg38 9p24.3-q34.3(chr9:204193-138179445) copy number gain See cases [RCV000133791] Chr9:204193..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
1 to 10 of 179 rows

Predicted Target Of
Summary Value
Count of predictions:2118
Count of miRNA genes:896
Interacting mature miRNAs:1035
Transcripts:ENST00000337006, ENST00000357081, ENST00000376080, ENST00000376081, ENST00000376083, ENST00000376109, ENST00000432218, ENST00000489265, ENST00000491784
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
597024166GWAS1120240_Hbreast carcinoma QTL GWAS1120240 (human)0.000006mammary gland integrity trait (VT:0010552)98566471385664714Human
597417981GWAS1514055_Hviral load QTL GWAS1514055 (human)1e-15viral load98580084585800846Human
597331782GWAS1427856_Hcolorectal cancer QTL GWAS1427856 (human)0.0000008colorectal cancer98565860385658604Human

D9S1865  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,254,199 - 88,254,348UniSTSGRCh37
Build 36987,444,019 - 87,444,168RGDNCBI36
Celera958,824,418 - 58,824,569RGD
Cytogenetic Map9q21.33UniSTS
HuRef958,078,492 - 58,078,643UniSTS
Marshfield Genetic Map987.29RGD
Marshfield Genetic Map987.29UniSTS
Genethon Genetic Map986.6UniSTS
Whitehead-YAC Contig Map9 UniSTS
RH65354  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,226,182 - 88,226,357UniSTSGRCh37
Build 36987,416,002 - 87,416,177RGDNCBI36
Celera958,796,407 - 58,796,582RGD
Cytogenetic Map9q21.33UniSTS
HuRef958,050,483 - 58,050,658UniSTS
GeneMap99-GB4 RH Map9276.53UniSTS
NCBI RH Map9748.3UniSTS
RH11900  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,161,881 - 88,162,036UniSTSGRCh37
Build 36987,351,701 - 87,351,856RGDNCBI36
Celera958,732,120 - 58,732,275RGD
Cytogenetic Map9q21.33UniSTS
HuRef957,986,097 - 57,986,252UniSTS
GeneMap99-GB4 RH Map9276.42UniSTS
RH99172  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,161,513 - 88,161,667UniSTSGRCh37
Build 36987,351,333 - 87,351,487RGDNCBI36
Celera958,731,752 - 58,731,906RGD
Cytogenetic Map9q21.33UniSTS
HuRef957,985,729 - 57,985,883UniSTS
GeneMap99-GB4 RH Map9276.53UniSTS
D9S1067E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,168,327 - 88,168,429UniSTSGRCh37
Build 36987,358,147 - 87,358,249RGDNCBI36
Celera958,738,566 - 58,738,668RGD
Cytogenetic Map9q21.33UniSTS
HuRef957,992,543 - 57,992,645UniSTS
G20277  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,166,676 - 88,166,783UniSTSGRCh37
Build 36987,356,496 - 87,356,603RGDNCBI36
Celera958,736,915 - 58,737,022RGD
Cytogenetic Map9q21.33UniSTS
HuRef957,990,892 - 57,990,999UniSTS
A005K03  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,166,676 - 88,166,783UniSTSGRCh37
Build 36987,356,496 - 87,356,603RGDNCBI36
Celera958,736,915 - 58,737,022RGD
Cytogenetic Map9q21.33UniSTS
HuRef957,990,892 - 57,990,999UniSTS
GeneMap99-GB4 RH Map9276.53UniSTS
NCBI RH Map9748.3UniSTS
D9S1981  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,166,602 - 88,166,886UniSTSGRCh37
Build 36987,356,422 - 87,356,706RGDNCBI36
Celera958,736,841 - 58,737,125RGD
Cytogenetic Map9q21.33UniSTS
HuRef957,990,818 - 57,991,102UniSTS
GeneMap99-GB4 RH Map9276.53UniSTS
Whitehead-RH Map9318.3UniSTS
Whitehead-YAC Contig Map9 UniSTS
NCBI RH Map9748.3UniSTS
D9S954  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,161,438 - 88,161,545UniSTSGRCh37
Build 36987,351,258 - 87,351,365RGDNCBI36
Celera958,731,677 - 58,731,784RGD
Cytogenetic Map9q21.33UniSTS
HuRef957,985,654 - 57,985,761UniSTS
Whitehead-YAC Contig Map9 UniSTS
A006N11  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,168,507 - 88,168,613UniSTSGRCh37
Build 36987,358,327 - 87,358,433RGDNCBI36
Celera958,738,746 - 58,738,852RGD
Cytogenetic Map9q21.33UniSTS
HuRef957,992,723 - 57,992,829UniSTS
GeneMap99-GB4 RH Map9276.53UniSTS
NCBI RH Map9748.3UniSTS
AGTPBP1__4266  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37988,161,410 - 88,162,165UniSTSGRCh37
Build 36987,351,230 - 87,351,985RGDNCBI36
Celera958,731,649 - 58,732,404RGD
HuRef957,985,626 - 57,986,381UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 174 1


1 to 30 of 80 rows
RefSeq Transcripts NM_001286715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001286717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001330701 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_015239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005251848 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005251849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011518418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011518420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011518421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017014545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017014546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017014547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017014548 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017014549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017014550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024447472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047423099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 80 rows

Ensembl Acc Id: ENST00000337006   ⟹   ENSP00000338512
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,546,540 - 85,742,029 (-)Ensembl
Ensembl Acc Id: ENST00000357081   ⟹   ENSP00000349592
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,546,539 - 85,741,954 (-)Ensembl
Ensembl Acc Id: ENST00000376080
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,657,454 - 85,692,780 (-)Ensembl
Ensembl Acc Id: ENST00000376081
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,655,216 - 85,741,888 (-)Ensembl
Ensembl Acc Id: ENST00000376083   ⟹   ENSP00000365251
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,546,539 - 85,741,818 (-)Ensembl
Ensembl Acc Id: ENST00000418478
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,722 - 85,791,539 (-)Ensembl
Ensembl Acc Id: ENST00000439544
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,997 - 85,793,555 (-)Ensembl
Ensembl Acc Id: ENST00000443630
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,997 - 85,793,569 (-)Ensembl
Ensembl Acc Id: ENST00000447148
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,756,042 - 85,765,112 (-)Ensembl
Ensembl Acc Id: ENST00000456242
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,786,529 (-)Ensembl
Ensembl Acc Id: ENST00000489265
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,553,873 - 85,579,025 (-)Ensembl
Ensembl Acc Id: ENST00000491784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,657,438 - 85,692,792 (-)Ensembl
Ensembl Acc Id: ENST00000628899   ⟹   ENSP00000487074
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,546,671 - 85,742,029 (-)Ensembl
Ensembl Acc Id: ENST00000653610
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,955 - 85,793,587 (-)Ensembl
Ensembl Acc Id: ENST00000653820
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,793,561 (-)Ensembl
Ensembl Acc Id: ENST00000655407
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,801,347 - 85,804,831 (-)Ensembl
Ensembl Acc Id: ENST00000655578
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,994 - 85,793,570 (-)Ensembl
Ensembl Acc Id: ENST00000656046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,005 - 85,804,048 (-)Ensembl
Ensembl Acc Id: ENST00000657057
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,075 - 85,793,531 (-)Ensembl
Ensembl Acc Id: ENST00000657430
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,783,668 - 85,805,087 (-)Ensembl
Ensembl Acc Id: ENST00000657835
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,011 - 85,793,531 (-)Ensembl
Ensembl Acc Id: ENST00000658640
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,154 (-)Ensembl
Ensembl Acc Id: ENST00000659440
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,803,591 (-)Ensembl
Ensembl Acc Id: ENST00000661241
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,019 - 85,805,070 (-)Ensembl
Ensembl Acc Id: ENST00000662218
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,804,964 (-)Ensembl
Ensembl Acc Id: ENST00000662476
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,084 (-)Ensembl
Ensembl Acc Id: ENST00000662541
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,994 - 85,804,036 (-)Ensembl
Ensembl Acc Id: ENST00000662699
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,793,555 (-)Ensembl
Ensembl Acc Id: ENST00000663552
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,054 (-)Ensembl
Ensembl Acc Id: ENST00000665115
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,804,732 (-)Ensembl
Ensembl Acc Id: ENST00000665236
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,790,220 - 85,805,087 (-)Ensembl
Ensembl Acc Id: ENST00000665432
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,783,752 - 85,805,072 (-)Ensembl
Ensembl Acc Id: ENST00000665605
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,998 - 85,804,847 (-)Ensembl
Ensembl Acc Id: ENST00000666824
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,000 - 85,805,066 (-)Ensembl
Ensembl Acc Id: ENST00000667142
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,005 - 85,803,386 (-)Ensembl
Ensembl Acc Id: ENST00000669324
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,994 - 85,793,587 (-)Ensembl
Ensembl Acc Id: ENST00000670006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,994 - 85,793,569 (-)Ensembl
Ensembl Acc Id: ENST00000721997
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,756,051 - 85,793,563 (-)Ensembl
Ensembl Acc Id: ENST00000721998
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,756,051 - 85,793,561 (-)Ensembl
Ensembl Acc Id: ENST00000721999
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,756,051 - 85,793,531 (-)Ensembl
Ensembl Acc Id: ENST00000722000
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,007 - 85,805,907 (-)Ensembl
Ensembl Acc Id: ENST00000722001
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,516 (-)Ensembl
Ensembl Acc Id: ENST00000722002
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,457 (-)Ensembl
Ensembl Acc Id: ENST00000722003
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,403 (-)Ensembl
Ensembl Acc Id: ENST00000722004
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,388 (-)Ensembl
Ensembl Acc Id: ENST00000722005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,075 - 85,805,411 (-)Ensembl
Ensembl Acc Id: ENST00000722006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,794 - 85,805,095 (-)Ensembl
Ensembl Acc Id: ENST00000722007
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,209 (-)Ensembl
Ensembl Acc Id: ENST00000722008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,953 - 85,805,094 (-)Ensembl
Ensembl Acc Id: ENST00000722009
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,996 - 85,805,128 (-)Ensembl
Ensembl Acc Id: ENST00000722010
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,001 - 85,805,118 (-)Ensembl
Ensembl Acc Id: ENST00000722011
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,999 - 85,805,096 (-)Ensembl
Ensembl Acc Id: ENST00000722012
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,096 (-)Ensembl
Ensembl Acc Id: ENST00000722013
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,094 (-)Ensembl
Ensembl Acc Id: ENST00000722014
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,087 (-)Ensembl
Ensembl Acc Id: ENST00000722015
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,001 - 85,805,084 (-)Ensembl
Ensembl Acc Id: ENST00000722016
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,001 - 85,805,082 (-)Ensembl
Ensembl Acc Id: ENST00000722017
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,805,081 (-)Ensembl
Ensembl Acc Id: ENST00000722018
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,804,952 (-)Ensembl
Ensembl Acc Id: ENST00000722019
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,794,478 - 85,805,158 (-)Ensembl
Ensembl Acc Id: ENST00000722020
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,794,478 - 85,805,094 (-)Ensembl
Ensembl Acc Id: ENST00000722021
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,794,478 - 85,805,081 (-)Ensembl
Ensembl Acc Id: ENST00000722022
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,792 - 85,793,536 (-)Ensembl
Ensembl Acc Id: ENST00000722023
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,797,497 - 85,805,206 (-)Ensembl
Ensembl Acc Id: ENST00000722024
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,793,579 (-)Ensembl
Ensembl Acc Id: ENST00000722025
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,997 - 85,793,563 (-)Ensembl
Ensembl Acc Id: ENST00000722026
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,785,997 - 85,793,563 (-)Ensembl
Ensembl Acc Id: ENST00000722027
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,793,552 (-)Ensembl
Ensembl Acc Id: ENST00000722028
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,793,550 (-)Ensembl
Ensembl Acc Id: ENST00000722029
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,786,003 - 85,793,539 (-)Ensembl
Ensembl Acc Id: ENST00000722030
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl985,802,585 - 85,805,076 (-)Ensembl
RefSeq Acc Id: NM_001286715   ⟹   NP_001273644
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,742,029 (-)NCBI
HuRef957,985,670 - 58,181,366 (-)NCBI
CHM1_1988,308,168 - 88,503,654 (-)NCBI
T2T-CHM13v2.0997,697,026 - 97,892,526 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001286717   ⟹   NP_001273646
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,742,029 (-)NCBI
HuRef957,985,670 - 58,181,366 (-)NCBI
CHM1_1988,308,168 - 88,503,654 (-)NCBI
T2T-CHM13v2.0997,697,026 - 97,892,526 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001330701   ⟹   NP_001317630
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,741,954 (-)NCBI
T2T-CHM13v2.0997,697,026 - 97,892,451 (-)NCBI
Sequence:
RefSeq Acc Id: NM_015239   ⟹   NP_056054
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,741,954 (-)NCBI
GRCh37988,161,454 - 88,356,944 (-)RGD
Build 36987,351,275 - 87,546,709 (-)NCBI Archive
Celera958,731,693 - 58,927,167 (-)RGD
HuRef957,985,670 - 58,181,366 (-)RGD
CHM1_1988,308,168 - 88,503,654 (-)NCBI
T2T-CHM13v2.0997,697,026 - 97,892,451 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005251848   ⟹   XP_005251905
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,741,954 (-)NCBI
GRCh37988,161,454 - 88,356,944 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011518418   ⟹   XP_011516720
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,551,682 - 85,741,954 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011518420   ⟹   XP_011516722
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,655,140 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011518421   ⟹   XP_011516723
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,621,202 - 85,741,954 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017014545   ⟹   XP_016870034
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,551,682 - 85,741,954 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047423086   ⟹   XP_047279042
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,805,198 (-)NCBI
RefSeq Acc Id: XM_047423087   ⟹   XP_047279043
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,805,198 (-)NCBI
RefSeq Acc Id: XM_047423088   ⟹   XP_047279044
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,805,198 (-)NCBI
RefSeq Acc Id: XM_047423089   ⟹   XP_047279045
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,805,198 (-)NCBI
RefSeq Acc Id: XM_047423090   ⟹   XP_047279046
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,805,198 (-)NCBI
RefSeq Acc Id: XM_047423091   ⟹   XP_047279047
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,805,188 (-)NCBI
RefSeq Acc Id: XM_047423092   ⟹   XP_047279048
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,805,188 (-)NCBI
RefSeq Acc Id: XM_047423093   ⟹   XP_047279049
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,805,188 (-)NCBI
RefSeq Acc Id: XM_047423094   ⟹   XP_047279050
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,805,483 (-)NCBI
RefSeq Acc Id: XM_047423095   ⟹   XP_047279051
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,726,082 (-)NCBI
RefSeq Acc Id: XM_047423096   ⟹   XP_047279052
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,724,893 (-)NCBI
RefSeq Acc Id: XM_047423097   ⟹   XP_047279053
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,741,652 (-)NCBI
RefSeq Acc Id: XM_047423098   ⟹   XP_047279054
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,551,682 - 85,724,893 (-)NCBI
RefSeq Acc Id: XM_047423099   ⟹   XP_047279055
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,692,813 (-)NCBI
RefSeq Acc Id: XM_047423100   ⟹   XP_047279056
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,546,539 - 85,692,813 (-)NCBI
RefSeq Acc Id: XM_047423101   ⟹   XP_047279057
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,586,837 - 85,741,954 (-)NCBI
RefSeq Acc Id: XM_054362514   ⟹   XP_054218489
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,892,434 (-)NCBI
RefSeq Acc Id: XM_054362515   ⟹   XP_054218490
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,954,997 (-)NCBI
RefSeq Acc Id: XM_054362516   ⟹   XP_054218491
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,954,997 (-)NCBI
RefSeq Acc Id: XM_054362517   ⟹   XP_054218492
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,954,997 (-)NCBI
RefSeq Acc Id: XM_054362518   ⟹   XP_054218493
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,954,997 (-)NCBI
RefSeq Acc Id: XM_054362519   ⟹   XP_054218494
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,955,612 (-)NCBI
RefSeq Acc Id: XM_054362520   ⟹   XP_054218495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,955,612 (-)NCBI
RefSeq Acc Id: XM_054362521   ⟹   XP_054218496
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,955,612 (-)NCBI
RefSeq Acc Id: XM_054362522   ⟹   XP_054218497
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,955,976 (-)NCBI
RefSeq Acc Id: XM_054362523   ⟹   XP_054218498
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,876,577 (-)NCBI
RefSeq Acc Id: XM_054362524   ⟹   XP_054218499
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,875,388 (-)NCBI
RefSeq Acc Id: XM_054362525   ⟹   XP_054218500
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,892,149 (-)NCBI
RefSeq Acc Id: XM_054362526   ⟹   XP_054218501
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,803 - 97,892,451 (-)NCBI
RefSeq Acc Id: XM_054362527   ⟹   XP_054218502
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,803 - 97,875,388 (-)NCBI
RefSeq Acc Id: XM_054362528   ⟹   XP_054218503
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,803 - 97,892,451 (-)NCBI
RefSeq Acc Id: XM_054362529   ⟹   XP_054218504
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,843,304 (-)NCBI
RefSeq Acc Id: XM_054362530   ⟹   XP_054218505
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,843,304 (-)NCBI
RefSeq Acc Id: XM_054362531   ⟹   XP_054218506
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,737,326 - 97,892,451 (-)NCBI
RefSeq Acc Id: XM_054362532   ⟹   XP_054218507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,697,026 - 97,805,625 (-)NCBI
RefSeq Acc Id: XM_054362533   ⟹   XP_054218508
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0997,771,689 - 97,892,451 (-)NCBI
1 to 30 of 70 rows
Protein RefSeqs NP_001273644 (Get FASTA)   NCBI Sequence Viewer  
  NP_001273646 (Get FASTA)   NCBI Sequence Viewer  
  NP_001317630 (Get FASTA)   NCBI Sequence Viewer  
  NP_056054 (Get FASTA)   NCBI Sequence Viewer  
  XP_005251905 (Get FASTA)   NCBI Sequence Viewer  
  XP_011516720 (Get FASTA)   NCBI Sequence Viewer  
  XP_011516722 (Get FASTA)   NCBI Sequence Viewer  
  XP_011516723 (Get FASTA)   NCBI Sequence Viewer  
  XP_016870034 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279042 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279043 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279044 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279045 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279046 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279047 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279048 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279049 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279050 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279051 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279052 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279053 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279054 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279055 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279056 (Get FASTA)   NCBI Sequence Viewer  
  XP_047279057 (Get FASTA)   NCBI Sequence Viewer  
  XP_054218489 (Get FASTA)   NCBI Sequence Viewer  
  XP_054218490 (Get FASTA)   NCBI Sequence Viewer  
  XP_054218491 (Get FASTA)   NCBI Sequence Viewer  
  XP_054218492 (Get FASTA)   NCBI Sequence Viewer  
  XP_054218493 (Get FASTA)   NCBI Sequence Viewer  
1 to 30 of 70 rows
1 to 5 of 49 rows
1 to 5 of 49 rows
RefSeq Acc Id: NP_056054   ⟸   NM_015239
- Peptide Label: isoform b
- Sequence:
RefSeq Acc Id: XP_005251905   ⟸   XM_005251848
- Peptide Label: isoform X1
- UniProtKB: Q9H9W8 (UniProtKB/Swiss-Prot),   Q9H8U6 (UniProtKB/Swiss-Prot),   Q6P9D6 (UniProtKB/Swiss-Prot),   Q658P5 (UniProtKB/Swiss-Prot),   Q63HM7 (UniProtKB/Swiss-Prot),   Q5VV80 (UniProtKB/Swiss-Prot),   B4DRZ8 (UniProtKB/Swiss-Prot),   B4DIT6 (UniProtKB/Swiss-Prot),   Q9NVK1 (UniProtKB/Swiss-Prot),   Q9UPW5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273646   ⟸   NM_001286717
- Peptide Label: isoform c
- UniProtKB: Q9UPW5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001273644   ⟸   NM_001286715
- Peptide Label: isoform a
- UniProtKB: J3KNS1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011516722   ⟸   XM_011518420
- Peptide Label: isoform X8
- Sequence:
Name Modeler Protein Id AA Range Protein Structure
AF-Q9UPW5-F1-model_v2 AlphaFold Q9UPW5 1-1226 view protein structure

RGD ID:7215363
Promoter ID:EPDNEW_H13428
Type:initiation region
Name:AGTPBP1_1
Description:ATP/GTP binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38985,742,270 - 85,742,330EPDNEW
RGD ID:6807533
Promoter ID:HG_KWN:63867
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000337006,   ENST00000357081,   ENST00000376081,   ENST00000376082,   ENST00000376109,   ENST00000395847,   NM_015239
Position:
Human AssemblyChrPosition (strand)Source
Build 36987,546,446 - 87,547,417 (-)MPROMDB


1 to 40 of 83 rows
Database
Acc Id
Source(s)
COSMIC AGTPBP1 COSMIC
Ensembl Genes ENSG00000135049 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000230303 Ensembl
Ensembl Transcript ENST00000337006 ENTREZGENE
  ENST00000357081 ENTREZGENE
  ENST00000357081.8 UniProtKB/Swiss-Prot
  ENST00000376083 ENTREZGENE
  ENST00000376083.7 UniProtKB/Swiss-Prot
  ENST00000628899 ENTREZGENE
  ENST00000628899.1 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot
  2.60.40.3120 UniProtKB/Swiss-Prot
  Zn peptidases UniProtKB/Swiss-Prot
GTEx ENSG00000135049 GTEx
  ENSG00000230303 GTEx
HGNC ID HGNC:17258 ENTREZGENE
Human Proteome Map AGTPBP1 Human Proteome Map
InterPro ARM-like UniProtKB/Swiss-Prot
  ARM-type_fold UniProtKB/Swiss-Prot
  CBPC1/4 UniProtKB/Swiss-Prot
  Cytosolic_carboxypeptidase UniProtKB/Swiss-Prot
  Pepdidase_M14_N UniProtKB/Swiss-Prot
  Peptidase_M14 UniProtKB/Swiss-Prot
KEGG Report hsa:23287 UniProtKB/Swiss-Prot
NCBI Gene 23287 ENTREZGENE
OMIM 606830 OMIM
PANTHER CYTOSOLIC CARBOXYPEPTIDASE UniProtKB/Swiss-Prot
  CYTOSOLIC CARBOXYPEPTIDASE 1 UniProtKB/Swiss-Prot
Pfam Pepdidase_M14_N UniProtKB/Swiss-Prot
  Peptidase_M14 UniProtKB/Swiss-Prot
PharmGKB PA24630 PharmGKB
PROSITE PEPTIDASE_M14 UniProtKB/Swiss-Prot
RNAcentral URS00001986A4 RNACentral
  URS00001D1CE8 RNACentral
  URS0000EEB26E RNACentral
  URS0000EEBD8D RNACentral
  URS0000EEC592 RNACentral
  URS0000EECC83 RNACentral
  URS0000EECDDC RNACentral
  URS0000EED1A2 RNACentral
1 to 40 of 83 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-14 AGTPBP1  ATP/GTP binding carboxypeptidase 1  AL353743.2  novel transcript  Data merged from RGD:16554688 737654 PROVISIONAL
2021-02-08 AGTPBP1  ATP/GTP binding carboxypeptidase 1  AGTPBP1  ATP/GTP binding protein 1  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AL353743.2  novel transcript  LOC102724057  uncharacterized LOC102724057  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC102724057  uncharacterized LOC102724057  AL353743.2  novel transcript  Symbol and/or name change 5135510 APPROVED