Agtpbp1 (ATP/GTP binding carboxypeptidase 1) - Rat Genome Database

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Gene: Agtpbp1 (ATP/GTP binding carboxypeptidase 1) Chinchilla lanigera
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Symbol: Agtpbp1
Name: ATP/GTP binding carboxypeptidase 1
RGD ID: 8808669
Description: INVOLVED IN protein deglutamylation (ortholog); ASSOCIATED WITH Childhood-Onset Neurodegeneration with Cerebellar Atrophy (ortholog); Developmental Disabilities (ortholog); Nerve Degeneration (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ATP/GTP binding protein 1; cytosolic carboxypeptidase 1
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554321,628,913 - 1,818,454 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554321,628,966 - 1,816,373 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References


Genomics

Comparative Map Data
Agtpbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554321,628,913 - 1,818,454 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554321,628,966 - 1,816,373 (+)NCBIChiLan1.0ChiLan1.0
AGTPBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl985,546,539 - 85,742,029 (-)EnsemblGRCh38hg38GRCh38
GRCh38985,546,539 - 85,742,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37988,161,454 - 88,356,944 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36987,351,275 - 87,546,709 (-)NCBINCBI36hg18NCBI36
Build 34985,391,008 - 85,586,443NCBI
Celera958,731,693 - 58,927,167 (-)NCBI
Cytogenetic Map9q21.33NCBI
HuRef957,985,670 - 58,181,366 (-)NCBIHuRef
CHM1_1988,308,168 - 88,503,654 (-)NCBICHM1_1
A230056J06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391359,727,990 - 59,733,037 (-)NCBIGRCm39mm39
GRCm39 Ensembl1359,593,556 - 59,733,041 (-)Ensembl
GRCm381359,580,176 - 59,585,223 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371359,681,537 - 59,686,584 (-)NCBIGRCm37mm9NCBIm37
Celera1360,505,893 - 60,641,475 (-)NCBICelera
Cytogenetic Map13B2NCBI
Agtpbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2175,120,540 - 5,238,874 (+)NCBI
Rnor_6.0 Ensembl175,511,385 - 5,614,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0175,510,009 - 5,614,416 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0177,722,385 - 7,837,764 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41711,040,339 - 11,155,923 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11711,063,063 - 11,155,645 (+)NCBI
Celera175,254,268 - 5,358,824 (+)NCBICelera
Cytogenetic Map17p14NCBI
AGTPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1984,871,571 - 85,049,056 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl984,871,450 - 85,037,897 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0939,161,182 - 39,357,043 (+)NCBIMhudiblu_PPA_v0panPan3
AGTPBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1173,853,491 - 74,030,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl173,887,934 - 74,107,312 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,616,116 - 74,795,461 (+)NCBI
ROS_Cfam_1.0174,158,469 - 74,338,565 (+)NCBI
UMICH_Zoey_3.1173,967,595 - 74,147,352 (+)NCBI
UNSW_CanFamBas_1.0173,736,759 - 73,916,152 (+)NCBI
UU_Cfam_GSD_1.0174,439,370 - 74,619,422 (+)NCBI
Agtpbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947120,497,104 - 120,673,188 (+)NCBI
SpeTri2.0NW_0049366801,065,375 - 1,240,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGTPBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1029,440,145 - 29,590,454 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11029,440,150 - 29,590,457 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21033,515,965 - 33,666,698 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGTPBP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11296,342,193 - 96,534,981 (-)NCBI
ChlSab1.1 Ensembl1296,342,759 - 96,534,800 (-)Ensembl
Agtpbp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248099,119,412 - 9,321,226 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000013680   ⟹   ENSCLAP00000013526
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554321,628,913 - 1,693,342 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013681   ⟹   ENSCLAP00000013527
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554321,643,233 - 1,818,454 (+)Ensembl
RefSeq Acc Id: ENSCLAT00000013682   ⟹   ENSCLAP00000013528
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_0049554321,643,233 - 1,818,454 (+)Ensembl
RefSeq Acc Id: XM_005387927   ⟹   XP_005387984
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554321,628,968 - 1,816,373 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387928   ⟹   XP_005387985
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554321,628,970 - 1,816,373 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387929   ⟹   XP_005387986
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554321,628,967 - 1,816,373 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005387930   ⟹   XP_005387987
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554321,628,967 - 1,810,264 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516036   ⟹   XP_013371490
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554321,691,046 - 1,816,373 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013516037   ⟹   XP_013371491
RefSeq Status:
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554321,628,966 - 1,815,261 (+)NCBI
Sequence:
RefSeq Acc Id: XR_261503
RefSeq Status:
Type: NON-CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_0049554321,628,966 - 1,794,672 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005387987   ⟸   XM_005387930
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_005387986   ⟸   XM_005387929
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_005387984   ⟸   XM_005387927
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_005387985   ⟸   XM_005387928
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_013371491   ⟸   XM_013516037
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_013371490   ⟸   XM_013516036
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSCLAP00000013526   ⟸   ENSCLAT00000013680
RefSeq Acc Id: ENSCLAP00000013527   ⟸   ENSCLAT00000013681
RefSeq Acc Id: ENSCLAP00000013528   ⟸   ENSCLAT00000013682


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000009351 Ensembl, ENTREZGENE
Ensembl Protein ENSCLAP00000013527 ENTREZGENE
  ENSCLAP00000013528 ENTREZGENE
Ensembl Transcript ENSCLAT00000013681 ENTREZGENE
  ENSCLAT00000013682 ENTREZGENE
NCBI Gene Agtpbp1 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-10 Agtpbp1  ATP/GTP binding carboxypeptidase 1  Agtpbp1  ATP/GTP binding protein 1  Symbol and/or name change 5135510 APPROVED