Agtpbp1 (ATP/GTP binding carboxypeptidase 1) - Rat Genome Database

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Gene: Agtpbp1 (ATP/GTP binding carboxypeptidase 1) Ictidomys tridecemlineatus
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Symbol: Agtpbp1
Name: ATP/GTP binding carboxypeptidase 1
RGD ID: 12660680
Description: INVOLVED IN protein deglutamylation (ortholog); ASSOCIATED WITH Childhood-Onset Neurodegeneration with Cerebellar Atrophy (ortholog); Developmental Disabilities (ortholog); Nerve Degeneration (ortholog); FOUND IN cytoplasm (ortholog); intracellular membrane-bounded organelle (ortholog); nucleolus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: ATP/GTP binding protein 1; cytosolic carboxypeptidase 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947120,497,104 - 120,673,188 (+)NCBI
SpeTri2.0NW_0049366801,065,375 - 1,240,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

Genomics

Comparative Map Data
Agtpbp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947120,497,104 - 120,673,188 (+)NCBI
SpeTri2.0NW_0049366801,065,375 - 1,240,909 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AGTPBP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl985,546,539 - 85,742,029 (-)EnsemblGRCh38hg38GRCh38
GRCh38985,546,539 - 85,742,029 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37988,161,454 - 88,356,944 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36987,351,275 - 87,546,709 (-)NCBINCBI36hg18NCBI36
Build 34985,391,008 - 85,586,443NCBI
Celera958,731,693 - 58,927,167 (-)NCBI
Cytogenetic Map9q21.33NCBI
HuRef957,985,670 - 58,181,366 (-)NCBIHuRef
CHM1_1988,308,168 - 88,503,654 (-)NCBICHM1_1
A230056J06Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391359,727,990 - 59,733,037 (-)NCBIGRCm39mm39
GRCm39 Ensembl1359,593,556 - 59,733,041 (-)Ensembl
GRCm381359,580,176 - 59,585,223 (-)NCBIGRCm38GRCm38mm10GRCm38
MGSCv371359,681,537 - 59,686,584 (-)NCBIGRCm37mm9NCBIm37
Celera1360,505,893 - 60,641,475 (-)NCBICelera
Cytogenetic Map13B2NCBI
Agtpbp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2175,120,540 - 5,238,874 (+)NCBI
Rnor_6.0 Ensembl175,511,385 - 5,614,435 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0175,510,009 - 5,614,416 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0177,722,385 - 7,837,764 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41711,040,339 - 11,155,923 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11711,063,063 - 11,155,645 (+)NCBI
Celera175,254,268 - 5,358,824 (+)NCBICelera
Cytogenetic Map17p14NCBI
Agtpbp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554321,628,913 - 1,818,454 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554321,628,966 - 1,816,373 (+)NCBIChiLan1.0ChiLan1.0
AGTPBP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1984,871,571 - 85,049,056 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl984,871,450 - 85,037,897 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0939,161,182 - 39,357,043 (+)NCBIMhudiblu_PPA_v0panPan3
AGTPBP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1173,853,491 - 74,030,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl173,887,934 - 74,107,312 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha174,616,116 - 74,795,461 (+)NCBI
ROS_Cfam_1.0174,158,469 - 74,338,565 (+)NCBI
UMICH_Zoey_3.1173,967,595 - 74,147,352 (+)NCBI
UNSW_CanFamBas_1.0173,736,759 - 73,916,152 (+)NCBI
UU_Cfam_GSD_1.0174,439,370 - 74,619,422 (+)NCBI
AGTPBP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1029,440,145 - 29,590,454 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11029,440,150 - 29,590,457 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21033,515,965 - 33,666,698 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AGTPBP1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11296,342,193 - 96,534,981 (-)NCBI
ChlSab1.1 Ensembl1296,342,759 - 96,534,800 (-)Ensembl
Agtpbp1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248099,119,412 - 9,321,226 (-)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_005337431   ⟹   XP_005337488
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947120,497,104 - 120,673,188 (+)NCBI
SpeTri2.0NW_0049366801,065,375 - 1,240,909 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734642   ⟹   XP_021590317
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947120,497,104 - 120,665,129 (+)NCBI
SpeTri2.0NW_0049366801,072,497 - 1,240,909 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734643   ⟹   XP_021590318
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947120,497,104 - 120,664,836 (+)NCBI
SpeTri2.0NW_0049366801,073,222 - 1,240,909 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021734644   ⟹   XP_021590319
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947120,561,098 - 120,672,709 (+)NCBI
SpeTri2.0NW_0049366801,065,378 - 1,176,989 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040285607   ⟹   XP_040141541
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024404947120,497,202 - 120,672,709 (+)NCBI
Reference Sequences
RefSeq Acc Id: XP_005337488   ⟸   XM_005337431
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021590319   ⟸   XM_021734644
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_021590317   ⟸   XM_021734642
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021590318   ⟸   XM_021734643
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_040141541   ⟸   XM_040285607
- Peptide Label: isoform X4
Protein Domains
Pepdidase_M14_N   Peptidase_M14


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000001961 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000001752 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000001967 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CBPC1/4 UniProtKB/TrEMBL
  Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
NCBI Gene Agtpbp1 ENTREZGENE
Pfam Pepdidase_M14_N UniProtKB/TrEMBL
  Peptidase_M14 UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt I3LZI6_ICTTR UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-10 Agtpbp1  ATP/GTP binding carboxypeptidase 1  Agtpbp1  ATP/GTP binding protein 1  Symbol and/or name change 5135510 APPROVED