KDELR2 (KDEL endoplasmic reticulum protein retention receptor 2) - Rat Genome Database

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Gene: KDELR2 (KDEL endoplasmic reticulum protein retention receptor 2) Homo sapiens
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Symbol: KDELR2
Name: KDEL endoplasmic reticulum protein retention receptor 2
RGD ID: 1312161
HGNC Page HGNC:6305
Description: Enables KDEL sequence binding activity. Involved in maintenance of protein localization in endoplasmic reticulum and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in COPI-coated vesicle membrane; Golgi membrane; and endoplasmic reticulum membrane. Implicated in osteogenesis imperfecta type 21.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2; ELP-1; ELP1; ER lumen protein retaining receptor 2; ER lumen protein-retaining receptor 2; ERD-2-like protein; ERD2-like protein 1; ERD2.2; FLJ45532; KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2; KDEL receptor 2; OI21
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,461,089 - 6,484,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,445,953 - 6,484,190 (-)EnsemblGRCh38hg38GRCh38
GRCh3776,500,720 - 6,523,783 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,467,237 - 6,490,374 (-)NCBINCBI36Build 36hg18NCBI36
Build 3476,275,509 - 6,296,940NCBI
Celera76,211,338 - 6,234,431 (+)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,373,518 - 6,395,670 (-)NCBIHuRef
CHM1_176,500,302 - 6,523,431 (-)NCBICHM1_1
T2T-CHM13v2.076,580,398 - 6,603,413 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,547,172 - 6,570,287 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDELR2Humanosteogenesis imperfecta type 21  IAGP (Homo sapiens) more ...8554872ClinVar Annotator: match by term: Osteogenesis imperfecta and type 21ClinVarPMID:33053334
KDELR2Humanosteogenesis imperfecta type 21  IAGP (Homo sapiens) and (Homo sapiens)8554872ClinVar Annotator: match by term: Osteogenesis imperfecta and type 21ClinVarPMID:33964184
KDELR2Humanosteogenesis imperfecta type 21  IAGP (Homo sapiens)8554872ClinVar Annotator: match by term: Osteogenesis imperfecta and type 21ClinVarPMID:25741868
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDELR2Humanosteogenesis imperfecta type 21  IAGP 7240710 OMIM 

1 to 20 of 91 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDELR2Human1,2-dimethylhydrazine increases expressionISOKdelr2 (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of KDELR2 mRNACTDPMID:22206623
KDELR2Human17alpha-ethynylestradiol multiple interactionsISOKdelr2 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of KDELR2 mRNACTDPMID:17942748
KDELR2Human17alpha-ethynylestradiol affects expressionISOKdelr2 (Rattus norvegicus)6480464Ethinyl Estradiol affects the expression of KDELR2 mRNACTDPMID:26865667
KDELR2Human17alpha-ethynylestradiol increases expressionISOKdelr2 (Mus musculus)6480464Ethinyl Estradiol results in increased expression of KDELR2 mRNACTDPMID:17555576 and PMID:17942748
KDELR2Human17beta-estradiol increases expressionISOKdelr2 (Mus musculus)6480464Estradiol results in increased expression of KDELR2 mRNACTDPMID:39298647
KDELR2Human17beta-hydroxy-5alpha-androstan-3-one increases expressionEXP 6480464Dihydrotestosterone results in increased expression of KDELR2 mRNACTDPMID:29581250
KDELR2Human2,2',4,4'-Tetrabromodiphenyl ether increases expressionEXP 64804642 more ...CTDPMID:19095052
KDELR2Human2,2',4,4'-Tetrabromodiphenyl ether multiple interactionsISOKdelr2 (Mus musculus)6480464[Flame Retardants results in increased abundance of 2 more ...CTDPMID:38995820
KDELR2Human2,2',4,4'-Tetrabromodiphenyl ether affects expressionISOKdelr2 (Mus musculus)64804642 more ...CTDPMID:30294300
KDELR2Human2,3',4,4',5-Pentachlorobiphenyl decreases expressionISOKdelr2 (Mus musculus)64804642 more ...CTDPMID:31388691
KDELR2Human2,3,7,8-tetrachlorodibenzodioxine multiple interactionsISOKdelr2 (Mus musculus)6480464[Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of KDELR2 mRNACTDPMID:17942748
KDELR2Human2,3,7,8-tetrachlorodibenzodioxine affects expressionISOKdelr2 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of KDELR2 mRNACTDPMID:21570461
KDELR2Human2,3,7,8-tetrachlorodibenzodioxine increases expressionISOKdelr2 (Mus musculus)6480464Tetrachlorodibenzodioxin results in increased expression of KDELR2 mRNACTDPMID:17942748
KDELR2Human2-methylcholine affects expressionEXP 6480464beta-methylcholine affects the expression of KDELR2 mRNACTDPMID:21179406
KDELR2Human5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole affects expressionISOKdelr2 (Rattus norvegicus)6480464Omeprazole affects the expression of KDELR2 mRNACTDPMID:19483382
KDELR2Human6-propyl-2-thiouracil affects expressionISOKdelr2 (Rattus norvegicus)6480464Propylthiouracil affects the expression of KDELR2 mRNACTDPMID:19483382
KDELR2Humanamiodarone affects expressionISOKdelr2 (Rattus norvegicus)6480464Amiodarone affects the expression of KDELR2 mRNACTDPMID:19483382
KDELR2Humanamitrole decreases expressionISOKdelr2 (Rattus norvegicus)6480464Amitrole results in decreased expression of KDELR2 mRNACTDPMID:38685447
KDELR2Humanatrazine increases expressionEXP 6480464Atrazine results in increased expression of KDELR2 mRNACTDPMID:22378314
KDELR2Humanbenzbromarone affects expressionISOKdelr2 (Rattus norvegicus)6480464Benzbromarone affects the expression of KDELR2 mRNACTDPMID:19483382

1 to 20 of 91 rows

Biological Process

  

Cellular Component
1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDELR2Humancis-Golgi network located_inISOKdelr2 (Rattus norvegicus)9068941PMID:19474315MGIPMID:19474315 and REF_RGD_ID:8554250
KDELR2Humancis-Golgi network is_active_inIBAMGI:1915387 more ...150520179 GO_CentralGO_REF:0000033
KDELR2HumanCOPI-coated vesicle membrane located_inIDA 150520179 PMID:18086916UniProtPMID:18086916
KDELR2HumanCOPI-coated vesicle membrane located_inIEAUniProtKB-SubCell:SL-0076150520179 UniProtGO_REF:0000044
KDELR2Humancytoplasmic vesicle located_inIEAUniProtKB-KW:KW-0968150520179 UniProtGO_REF:0000043
KDELR2Humanendoplasmic reticulum located_inIEAUniProtKB-KW:KW-0256150520179 UniProtGO_REF:0000043
KDELR2Humanendoplasmic reticulum is_active_inIBAMGI:1915387 more ...150520179 GO_CentralGO_REF:0000033
KDELR2Humanendoplasmic reticulum located_inIEAARBA:ARBA00028672150520179 UniProtGO_REF:0000117
KDELR2Humanendoplasmic reticulum membrane located_inIEAUniProtKB-SubCell:SL-0097150520179 UniProtGO_REF:0000044
KDELR2Humanendoplasmic reticulum membrane located_inIDA 150520179 PMID:1325562 and PMID:18086916UniProtPMID:1325562 and PMID:18086916
KDELR2Humanendoplasmic reticulum membrane located_inTAS 150520179 ReactomeReactome:R-HSA-6811423 and Reactome:R-HSA-6811427
KDELR2HumanGolgi apparatus located_inIEAUniProtKB-KW:KW-0333150520179 UniProtGO_REF:0000043
KDELR2HumanGolgi membrane located_inTAS 150520179 ReactomeReactome:R-HSA-6811417 and Reactome:R-HSA-6811418
KDELR2HumanGolgi membrane located_inIDA 150520179 PMID:1325562 and PMID:18086916UniProtPMID:1325562 and PMID:18086916
KDELR2HumanGolgi membrane located_inIEAUniProtKB-SubCell:SL-0134150520179 UniProtGO_REF:0000044
KDELR2Humanmembrane located_inISSUniProtKB:Q5ZKX9150520179 UniProtGO_REF:0000024
KDELR2Humanmembrane located_inIEAUniProtKB-KW:KW-0472150520179 UniProtGO_REF:0000043
KDELR2Humanmembrane located_inIEAInterPro:IPR000133150520179 InterProGO_REF:0000002
KDELR2Humantransport vesicle located_inTAS 150520179 ReactomeReactome:R-HSA-6811418 more ...
1 to 19 of 19 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDELR2HumanER retention sequence binding enablesIEAInterPro:IPR000133150520179 InterProGO_REF:0000002
KDELR2HumanER retention sequence binding enablesIBAPANTHER:PTN000062353 more ...150520179 GO_CentralGO_REF:0000033
KDELR2HumanKDEL sequence binding enablesIDA 150520179 PMID:1325562 and PMID:18086916UniProtPMID:1325562 and PMID:18086916

Imported Annotations - KEGG (archival)

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDELR2HumanVibrio cholerae infection pathway  IEA 6907045 KEGGhsa:05110
1 to 20 of 22 rows
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KDELR2HumanAutosomal recessive inheritance  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanBarrel-shaped chest  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanBell-shaped thorax  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanBowing of the arm  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanBowing of the legs  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanChildhood onset  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanCoxa valga  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanCoxa vara  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanDisproportionate short-limb short stature  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanFetal onset  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanHypotonia  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanInfantile onset  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanJoint hypermobility  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanMotor delay  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanOsteoporosis  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanPectus excavatum  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanPes planus  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanPes valgus  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanPlatyspondyly  IAGP 8699517 HPOMIM:619131 and PMID:33053334
KDELR2HumanRecurrent fractures  IAGP 8699517 HPOMIM:619131 and PMID:33053334
1 to 20 of 22 rows

#
Reference Title
Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:1316805   PMID:1325562   PMID:9118249   PMID:11752456   PMID:12071860   PMID:12477932   PMID:12690205   PMID:12853948   PMID:14702039   PMID:15489334   PMID:16344560   PMID:17353931  
PMID:18086916   PMID:19322201   PMID:21873635   PMID:23376485   PMID:24189400   PMID:24981860   PMID:25248455   PMID:25569479   PMID:25682866   PMID:25959826   PMID:25963833   PMID:26618866  
PMID:26638075   PMID:26687479   PMID:27025967   PMID:28205554   PMID:28611215   PMID:29117863   PMID:29615496   PMID:30621148   PMID:30760704   PMID:31342232   PMID:31678930   PMID:31732153  
PMID:32060556   PMID:32534703   PMID:32645101   PMID:32877691   PMID:33053334   PMID:33731348   PMID:33961781   PMID:33964184   PMID:34079125   PMID:34146461   PMID:34709727   PMID:35575683  
PMID:36305789   PMID:36604567   PMID:37667382   PMID:38891874   PMID:39365189   PMID:39823405  



KDELR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,461,089 - 6,484,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,445,953 - 6,484,190 (-)EnsemblGRCh38hg38GRCh38
GRCh3776,500,720 - 6,523,783 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,467,237 - 6,490,374 (-)NCBINCBI36Build 36hg18NCBI36
Build 3476,275,509 - 6,296,940NCBI
Celera76,211,338 - 6,234,431 (+)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,373,518 - 6,395,670 (-)NCBIHuRef
CHM1_176,500,302 - 6,523,431 (-)NCBICHM1_1
T2T-CHM13v2.076,580,398 - 6,603,413 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,547,172 - 6,570,287 (-)NCBI
Kdelr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,389,575 - 143,407,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,389,593 - 143,407,656 (+)EnsemblGRCm39 Ensembl
GRCm385143,403,820 - 143,421,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,403,838 - 143,421,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv375144,165,499 - 144,182,955 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365144,165,505 - 144,182,947 (+)NCBIMGSCv36mm8
Celera5140,450,973 - 140,468,362 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.12NCBI
Kdelr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,252,424 - 16,270,737 (-)NCBIGRCr8
mRatBN7.21211,138,820 - 11,157,117 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,138,820 - 11,157,153 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,946,125 - 11,964,325 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,569,412 - 12,587,613 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,595,547 - 11,613,739 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,192,452 - 13,210,758 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,192,453 - 13,210,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,232,465 - 15,250,771 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,498,420 - 11,513,595 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,524,186 - 11,543,482 (-)NCBI
Celera1212,932,160 - 12,950,458 (-)NCBICelera
Cytogenetic Map12p11NCBI
Kdelr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,202,401 - 13,221,319 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546013,202,400 - 13,221,319 (+)NCBIChiLan1.0ChiLan1.0
KDELR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,188,025 - 11,211,263 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,512,862 - 59,535,981 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,960,456 - 6,983,515 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,654,430 - 6,667,794 (-)NCBIpanpan1.1PanPan1.1panPan2
KDELR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,796,586 - 11,815,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,798,377 - 11,815,760 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,421,923 - 13,441,095 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,798,777 - 11,817,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,799,791 - 11,817,956 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,674,580 - 11,693,744 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,654,175 - 11,673,193 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,880,887 - 11,900,112 (-)NCBIUU_Cfam_GSD_1.0
Kdelr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,024,950 - 140,042,738 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493676515,820 - 33,932 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493676516,017 - 33,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDELR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,716,646 - 4,735,300 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,716,651 - 4,735,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KDELR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,671,314 - 15,694,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,672,442 - 15,694,148 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666102377,263 - 401,933 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdelr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,853,425 - 30,873,754 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,853,252 - 30,875,730 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in KDELR2
35 total Variants

1 to 10 of 91 rows
Name
Type
Condition(s)
Position(s)
Clinical significance
GRCh38/hg38 7p22.1-21.3(chr7:6106402-11012657)x1 copy number loss See cases [RCV000050923] Chr7:6106402..11012657 [GRCh38]
Chr7:6146033..11052284 [GRCh37]
Chr7:6112559..11018809 [NCBI36]
Chr7:7p22.1-21.3
pathogenic
GRCh38/hg38 7p22.1(chr7:5062000-6692258)x1 copy number loss See cases [RCV000052256] Chr7:5062000..6692258 [GRCh38]
Chr7:5101631..6731889 [GRCh37]
Chr7:5068157..6698414 [NCBI36]
Chr7:7p22.1
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:54185-159282390)x1 copy number loss See cases [RCV000135401] Chr7:54185..159282390 [GRCh38]
Chr7:54185..159075079 [GRCh37]
Chr7:149268..158767840 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7p22.3-14.1(chr7:54185-41875885)x3 copy number gain See cases [RCV000051159] Chr7:54185..41875885 [GRCh38]
Chr7:54185..41915483 [GRCh37]
Chr7:149268..41882008 [NCBI36]
Chr7:7p22.3-14.1
pathogenic
GRCh38/hg38 7p22.3-q36.3(chr7:53985-159282531)x1 copy number loss See cases [RCV000052250] Chr7:53985..159282531 [GRCh38]
Chr7:53985..159075220 [GRCh37]
Chr7:149068..158767981 [NCBI36]
Chr7:7p22.3-q36.3
pathogenic
GRCh38/hg38 7p22.1(chr7:4876621-6492003)x3 copy number gain See cases [RCV000053408] Chr7:4876621..6492003 [GRCh38]
Chr7:4916252..6531634 [GRCh37]
Chr7:4882778..6498159 [NCBI36]
Chr7:7p22.1
uncertain significance
GRCh38/hg38 7p22.3-15.3(chr7:53985-24361531)x3 copy number gain See cases [RCV000053528] Chr7:53985..24361531 [GRCh38]
Chr7:53985..24401150 [GRCh37]
Chr7:149068..24367675 [NCBI36]
Chr7:7p22.3-15.3
pathogenic
GRCh38/hg38 7p22.3-21.3(chr7:54185-8274834)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053529]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053529]|See cases [RCV000053529] Chr7:54185..8274834 [GRCh38]
Chr7:54185..8314464 [GRCh37]
Chr7:149268..8280989 [NCBI36]
Chr7:7p22.3-21.3
pathogenic
GRCh38/hg38 7p22.3-14.2(chr7:54185-37089712)x3 copy number gain See cases [RCV000053530] Chr7:54185..37089712 [GRCh38]
Chr7:54185..37129317 [GRCh37]
Chr7:149268..37095842 [NCBI36]
Chr7:7p22.3-14.2
pathogenic
GRCh37/hg19 7p22.3-21.3(chr7:2789546-9066894)x3 copy number gain See cases [RCV000515563] Chr7:2789546..9066894 [GRCh37]
Chr7:7p22.3-21.3
pathogenic
1 to 10 of 91 rows

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR19Ahsa-miR-19a-3pMirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248

Predicted Target Of
Summary Value
Count of predictions:1296
Count of miRNA genes:762
Interacting mature miRNAs:868
Transcripts:ENST00000258739, ENST00000382267, ENST00000454368, ENST00000462052, ENST00000463747, ENST00000490996
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 17 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
407385832GWAS1034808_Hobsolete_red blood cell distribution width QTL GWAS1034808 (human)1e-27obsolete_red blood cell distribution width764810456481046Human
596977079GWAS1096598_HRed cell distribution width QTL GWAS1096598 (human)7e-17Red cell distribution width764638876463888Human
597493465GWAS1589539_Hosteoarthritis QTL GWAS1589539 (human)2e-08osteoarthritis764667446466745Human
596958449GWAS1077968_HRed cell distribution width QTL GWAS1077968 (human)1e-27Red cell distribution width764810456481046Human
1643391BW322_HBody weight QTL 322 (human)2.690.0002Body fat amount7122435431Human
597357271GWAS1453345_Hirritable bowel syndrome QTL GWAS1453345 (human)0.000005irritable bowel syndrome764764046476405Human
597493101GWAS1589175_Hosteoarthritis QTL GWAS1589175 (human)4e-08osteoarthritis764667446466745Human
597376779GWAS1472853_HRed cell distribution width QTL GWAS1472853 (human)1e-27Red cell distribution widthred blood cell distribution width- standard deviation (CMO:0003232)764810456481046Human
1643402BMD2_HBone mineral density QTL 2 (human)2.690.0002Bone mineral density7122435431Human
407178966GWAS827942_Hobsolete_red blood cell distribution width QTL GWAS827942 (human)7e-17obsolete_red blood cell distribution width764638876463888Human

1 to 10 of 17 rows
SHGC-53741  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,513,750 - 6,513,920UniSTSGRCh37
Build 3676,480,275 - 6,480,445RGDNCBI36
Celera76,221,240 - 6,221,410RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,385,770 - 6,385,940UniSTS
CRA_TCAGchr7v276,560,208 - 6,560,378UniSTS
TNG Radiation Hybrid Map73277.0UniSTS
STS-T98803  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,501,720 - 6,501,889UniSTSGRCh37
Build 3676,468,245 - 6,468,414RGDNCBI36
Celera76,233,258 - 6,233,423RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,374,526 - 6,374,691UniSTS
CRA_TCAGchr7v276,548,180 - 6,548,345UniSTS
GeneMap99-GB4 RH Map749.91UniSTS
NCBI RH Map7147.2UniSTS
A002G37  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,500,747 - 6,500,922UniSTSGRCh37
Build 3676,467,272 - 6,467,447RGDNCBI36
Celera76,234,221 - 6,234,396RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,373,553 - 6,373,728UniSTS
CRA_TCAGchr7v276,547,207 - 6,547,382UniSTS
GeneMap99-GB4 RH Map747.89UniSTS
Whitehead-RH Map736.5UniSTS
NCBI RH Map7147.2UniSTS
RH91356  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,513,988 - 6,514,126UniSTSGRCh37
Build 3676,480,513 - 6,480,651RGDNCBI36
Celera76,221,034 - 6,221,172RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,386,008 - 6,386,146UniSTS
CRA_TCAGchr7v276,560,446 - 6,560,584UniSTS
GeneMap99-GB4 RH Map740.69UniSTS
D7S2139E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,500,743 - 6,500,966UniSTSGRCh37
Build 3676,467,268 - 6,467,491RGDNCBI36
Celera76,234,177 - 6,234,400RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,373,549 - 6,373,772UniSTS
CRA_TCAGchr7v276,547,203 - 6,547,426UniSTS
D7S2873  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,500,776 - 6,500,963UniSTSGRCh37
Build 3676,467,301 - 6,467,488RGDNCBI36
Celera76,234,180 - 6,234,367RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,373,582 - 6,373,769UniSTS
CRA_TCAGchr7v276,547,236 - 6,547,423UniSTS
Whitehead-YAC Contig Map7 UniSTS
A002F46  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,501,386 - 6,501,546UniSTSGRCh37
Build 3676,467,911 - 6,468,071RGDNCBI36
Cytogenetic Map7p22.1UniSTS
HuRef76,374,192 - 6,374,352UniSTS
CRA_TCAGchr7v276,547,846 - 6,548,006UniSTS
GeneMap99-GB4 RH Map742.0UniSTS
Whitehead-RH Map736.8UniSTS
D7S2246  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,501,447 - 6,501,597UniSTSGRCh37
Build 3676,467,972 - 6,468,122RGDNCBI36
Celera76,233,546 - 6,233,696RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,374,253 - 6,374,403UniSTS
CRA_TCAGchr7v276,547,907 - 6,548,057UniSTS
GeneMap99-GB4 RH Map740.69UniSTS
Whitehead-RH Map737.5UniSTS
Whitehead-YAC Contig Map7 UniSTS
RH48479  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,512,865 - 6,512,956UniSTSGRCh37
Build 3676,479,390 - 6,479,481RGDNCBI36
Celera76,222,204 - 6,222,295RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,384,885 - 6,384,976UniSTS
CRA_TCAGchr7v276,559,323 - 6,559,414UniSTS
GeneMap99-GB4 RH Map740.06UniSTS
NCBI RH Map7133.7UniSTS
D7S2768  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,502,383 - 6,502,489UniSTSGRCh37
Build 3676,468,908 - 6,469,014RGDNCBI36
Celera76,232,658 - 6,232,764RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,375,185 - 6,375,291UniSTS
CRA_TCAGchr7v276,548,839 - 6,548,945UniSTS
TNG Radiation Hybrid Map73257.0UniSTS
Stanford-G3 RH Map7261.0UniSTS
NCBI RH Map7149.8UniSTS
GeneMap99-G3 RH Map7261.0UniSTS
SHGC-55953  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3776,500,742 - 6,500,872UniSTSGRCh37
Build 3676,467,267 - 6,467,397RGDNCBI36
Celera76,234,271 - 6,234,401RGD
Cytogenetic Map7p22.1UniSTS
HuRef76,373,548 - 6,373,678UniSTS
CRA_TCAGchr7v276,547,202 - 6,547,332UniSTS
GeneMap99-GB4 RH Map741.79UniSTS
Whitehead-RH Map737.8UniSTS




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1


1 to 17 of 17 rows
RefSeq Transcripts NM_001100603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_006854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC072052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK093917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK124072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK315702 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL547016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AV660600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC012994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC071982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH236963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH878731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA713413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M88458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X63745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 17 of 17 rows

Ensembl Acc Id: ENST00000258739   ⟹   ENSP00000258739
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,461,089 - 6,484,152 (-)Ensembl
Ensembl Acc Id: ENST00000382267   ⟹   ENSP00000371702
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,469,654 - 6,484,149 (-)Ensembl
Ensembl Acc Id: ENST00000454368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,461,762 - 6,470,406 (-)Ensembl
Ensembl Acc Id: ENST00000462052
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,474,080 - 6,484,143 (-)Ensembl
Ensembl Acc Id: ENST00000463747
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,445,953 - 6,484,190 (-)Ensembl
Ensembl Acc Id: ENST00000490996   ⟹   ENSP00000420501
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl76,462,872 - 6,484,057 (-)Ensembl
RefSeq Acc Id: NM_001100603   ⟹   NP_001094073
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3876,461,089 - 6,484,152 (-)NCBI
GRCh3776,500,712 - 6,523,849 (-)RGD
Build 3676,467,237 - 6,490,374 (-)NCBI Archive
Celera76,211,338 - 6,234,431 (+)RGD
HuRef76,373,518 - 6,395,670 (-)RGD
CHM1_176,500,302 - 6,523,431 (-)NCBI
T2T-CHM13v2.076,580,398 - 6,603,413 (-)NCBI
CRA_TCAGchr7v276,547,172 - 6,570,287 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NM_006854   ⟹   NP_006845
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3876,461,089 - 6,484,152 (-)NCBI
GRCh3776,500,712 - 6,523,849 (-)RGD
Build 3676,467,237 - 6,490,374 (-)NCBI Archive
Celera76,211,338 - 6,234,431 (+)RGD
HuRef76,373,518 - 6,395,670 (-)RGD
CHM1_176,500,302 - 6,523,431 (-)NCBI
T2T-CHM13v2.076,580,398 - 6,603,413 (-)NCBI
CRA_TCAGchr7v276,547,172 - 6,570,287 (-)ENTREZGENE
Sequence:
RefSeq Acc Id: NP_006845   ⟸   NM_006854
- Peptide Label: isoform 1
- UniProtKB: Q6IPC5 (UniProtKB/Swiss-Prot),   A4D2P4 (UniProtKB/Swiss-Prot),   Q96E30 (UniProtKB/Swiss-Prot),   P33947 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001094073   ⟸   NM_001100603
- Peptide Label: isoform 2
- UniProtKB: P33947 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000420501   ⟸   ENST00000490996
Ensembl Acc Id: ENSP00000258739   ⟸   ENST00000258739
Ensembl Acc Id: ENSP00000371702   ⟸   ENST00000382267

Name Modeler Protein Id AA Range Protein Structure
AF-P33947-F1-model_v2 AlphaFold P33947 1-212 view protein structure

RGD ID:6805838
Promoter ID:HG_KWN:56225
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562,   Lymphoblastoid
Transcripts:OTTHUMT00000324384
Position:
Human AssemblyChrPosition (strand)Source
Build 3676,476,301 - 6,476,801 (-)MPROMDB
RGD ID:6805837
Promoter ID:HG_KWN:56226
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:OTTHUMT00000324388
Position:
Human AssemblyChrPosition (strand)Source
Build 3676,480,336 - 6,480,836 (-)MPROMDB
RGD ID:7209897
Promoter ID:EPDNEW_H10694
Type:initiation region
Name:KDELR2_1
Description:KDEL endoplasmic reticulum protein retention receptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh3876,484,152 - 6,484,212EPDNEW
RGD ID:6805445
Promoter ID:HG_KWN:56227
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_001100603,   OTTHUMT00000059424,   OTTHUMT00000324385,   OTTHUMT00000324386,   OTTHUMT00000324387,   UC003SQD.2
Position:
Human AssemblyChrPosition (strand)Source
Build 3676,490,076 - 6,490,576 (-)MPROMDB
RGD ID:6853018
Promoter ID:EP74330
Type:initiation region
Name:HS_KDELR2
Description:KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention 2ceptor 2.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Mammalian gene collection (MGC) full-length cDNA cloning
Position:
Human AssemblyChrPosition (strand)Source
Build 3676,490,318 - 6,490,378EPD


1 to 28 of 28 rows
Database
Acc Id
Source(s)
COSMIC KDELR2 COSMIC
Ensembl Genes ENSG00000136240 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000258739 ENTREZGENE
  ENST00000258739.9 UniProtKB/Swiss-Prot
  ENST00000490996 ENTREZGENE
  ENST00000490996.1 UniProtKB/Swiss-Prot
GTEx ENSG00000136240 GTEx
HGNC ID HGNC:6305 ENTREZGENE
Human Proteome Map KDELR2 Human Proteome Map
InterPro ER_ret_rcpt UniProtKB/Swiss-Prot
KEGG Report hsa:11014 UniProtKB/Swiss-Prot
NCBI Gene 11014 ENTREZGENE
OMIM 609024 OMIM
PANTHER PTHR10585 UniProtKB/Swiss-Prot
Pfam ER_lumen_recept UniProtKB/Swiss-Prot
PharmGKB PA30084 PharmGKB
PRINTS ERLUMENR UniProtKB/Swiss-Prot
PROSITE ER_LUMEN_RECEPTOR_1 UniProtKB/Swiss-Prot
  ER_LUMEN_RECEPTOR_2 UniProtKB/Swiss-Prot
UniProt A4D2P4 ENTREZGENE
  ERD22_HUMAN UniProtKB/Swiss-Prot
  H7BYF7_HUMAN UniProtKB/TrEMBL
  P33947 ENTREZGENE
  Q6IPC5 ENTREZGENE
  Q96E30 ENTREZGENE
UniProt Secondary A4D2P4 UniProtKB/Swiss-Prot
  Q6IPC5 UniProtKB/Swiss-Prot
  Q96E30 UniProtKB/Swiss-Prot
1 to 28 of 28 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 KDELR2  KDEL endoplasmic reticulum protein retention receptor 2  KDELR2  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  Symbol and/or name change 5135510 APPROVED