Kdelr2 (KDEL endoplasmic reticulum protein retention receptor 2) - Rat Genome Database

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Gene: Kdelr2 (KDEL endoplasmic reticulum protein retention receptor 2) Chinchilla lanigera
Analyze
Symbol: Kdelr2
Name: KDEL endoplasmic reticulum protein retention receptor 2
RGD ID: 8739138
Description: ENCODES a protein that exhibits KDEL sequence binding (ortholog); INVOLVED IN maintenance of protein localization in endoplasmic reticulum (ortholog); retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (ortholog); ASSOCIATED WITH osteogenesis imperfecta type 21 (ortholog); FOUND IN cis-Golgi network (ortholog); COPI-coated vesicle membrane (ortholog); endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ER lumen protein-retaining receptor 2; KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,202,401 - 13,221,319 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546013,202,400 - 13,221,319 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Kdelr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,202,401 - 13,221,319 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546013,202,400 - 13,221,319 (+)NCBIChiLan1.0ChiLan1.0
KDELR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,461,089 - 6,484,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,445,953 - 6,484,190 (-)EnsemblGRCh38hg38GRCh38
GRCh3776,500,720 - 6,523,783 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,467,237 - 6,490,374 (-)NCBINCBI36Build 36hg18NCBI36
Build 3476,275,509 - 6,296,940NCBI
Celera76,211,338 - 6,234,431 (+)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,373,518 - 6,395,670 (-)NCBIHuRef
CHM1_176,500,302 - 6,523,431 (-)NCBICHM1_1
T2T-CHM13v2.076,580,398 - 6,603,413 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,547,172 - 6,570,287 (-)NCBI
Kdelr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,389,575 - 143,407,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,389,593 - 143,407,656 (+)EnsemblGRCm39 Ensembl
GRCm385143,403,820 - 143,421,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,403,838 - 143,421,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv375144,165,499 - 144,182,955 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365144,165,505 - 144,182,947 (+)NCBIMGSCv36mm8
Celera5140,450,973 - 140,468,362 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.12NCBI
Kdelr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,252,424 - 16,270,737 (-)NCBIGRCr8
mRatBN7.21211,138,820 - 11,157,117 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,138,820 - 11,157,153 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,946,125 - 11,964,325 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,569,412 - 12,587,613 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,595,547 - 11,613,739 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,192,452 - 13,210,758 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,192,453 - 13,210,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,232,465 - 15,250,771 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,498,420 - 11,513,595 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,524,186 - 11,543,482 (-)NCBI
Celera1212,932,160 - 12,950,458 (-)NCBICelera
Cytogenetic Map12p11NCBI
KDELR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,188,025 - 11,211,263 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,512,862 - 59,535,981 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,960,456 - 6,983,515 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,654,430 - 6,667,794 (-)NCBIpanpan1.1PanPan1.1panPan2
KDELR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,796,586 - 11,815,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,798,377 - 11,815,760 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,421,923 - 13,441,095 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,798,777 - 11,817,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,799,791 - 11,817,956 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,674,580 - 11,693,744 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,654,175 - 11,673,193 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,880,887 - 11,900,112 (-)NCBIUU_Cfam_GSD_1.0
Kdelr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,024,950 - 140,042,738 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493676515,820 - 33,932 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493676516,017 - 33,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDELR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,716,646 - 4,735,300 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,716,651 - 4,735,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KDELR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,671,314 - 15,694,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,672,442 - 15,694,148 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666102377,263 - 401,933 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdelr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,853,425 - 30,873,754 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,853,252 - 30,875,730 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000011986   ⟹   ENSCLAP00000011847
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495546013,202,401 - 13,221,319 (+)Ensembl
RefSeq Acc Id: XM_005397890   ⟹   XP_005397947
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546013,202,401 - 13,221,319 (+)NCBI
Sequence:
RefSeq Acc Id: XM_013521168   ⟹   XP_013376622
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495546013,202,400 - 13,221,319 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005397947 (Get FASTA)   NCBI Sequence Viewer  
  XP_013376622 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000011847
  ENSCLAP00000011847.1
RefSeq Acc Id: XP_005397947   ⟸   XM_005397890
- Peptide Label: isoform X1
- UniProtKB: A0A8C2VF86 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013376622   ⟸   XM_013521168
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSCLAP00000011847   ⟸   ENSCLAT00000011986


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000008164 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000011986 ENTREZGENE
  ENSCLAT00000011986.1 UniProtKB/TrEMBL
InterPro ER_ret_rcpt UniProtKB/TrEMBL
NCBI Gene Kdelr2 ENTREZGENE
PANTHER ER LUMEN PROTEIN-RETAINING RECEPTOR 2 UniProtKB/TrEMBL
  PTHR10585 UniProtKB/TrEMBL
Pfam ER_lumen_recept UniProtKB/TrEMBL
PRINTS ERLUMENR UniProtKB/TrEMBL
PROSITE ER_LUMEN_RECEPTOR_1 UniProtKB/TrEMBL
  ER_LUMEN_RECEPTOR_2 UniProtKB/TrEMBL
UniProt A0A8C2VF86 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-16 Kdelr2  KDEL endoplasmic reticulum protein retention receptor 2    KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  Symbol and/or name change 5135510 APPROVED