Kdelr2 (KDEL endoplasmic reticulum protein retention receptor 2) - Rat Genome Database

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Gene: Kdelr2 (KDEL endoplasmic reticulum protein retention receptor 2) Rattus norvegicus
Analyze
Symbol: Kdelr2
Name: KDEL endoplasmic reticulum protein retention receptor 2
RGD ID: 1304618
Description: Predicted to enable KDEL sequence binding activity. Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein retention in ER lumen; and retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum. Located in cis-Golgi network and endoplasmic reticulum. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 21. Orthologous to human KDELR2 (KDEL endoplasmic reticulum protein retention receptor 2); INTERACTS WITH 17alpha-ethynylestradiol; 5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ER lumen protein retaining receptor 2; ER lumen protein-retaining receptor 2; KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2; KDEL receptor 2; LOC304290
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21211,138,820 - 11,157,117 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,138,820 - 11,157,153 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,946,125 - 11,964,325 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01212,569,412 - 12,587,613 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01211,595,547 - 11,613,739 (-)NCBIRnor_WKY
Rnor_6.01213,192,452 - 13,210,758 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,192,453 - 13,210,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,232,465 - 15,250,771 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,498,420 - 11,513,595 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,524,186 - 11,543,482 (-)NCBI
Celera1212,932,160 - 12,950,458 (-)NCBICelera
Cytogenetic Map12p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-methylcholine  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
amiodarone  (EXP)
atrazine  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
beta-hexachlorocyclohexane  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
cadmium sulfate  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
clobetasol  (ISO)
clofibrate  (EXP)
copper(II) sulfate  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
flutamide  (EXP)
folic acid  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (EXP)
glafenine  (EXP)
ivermectin  (ISO)
L-ethionine  (EXP)
mercury atom  (ISO)
mercury(0)  (ISO)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylseleninic acid  (ISO)
mifepristone  (ISO)
nickel atom  (ISO)
Nivalenol  (ISO)
omeprazole  (EXP)
paracetamol  (ISO)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (EXP,ISO)
piroxicam  (ISO)
propiconazole  (ISO)
pyrimidifen  (ISO)
rotenone  (EXP)
Salinomycin  (ISO)
SB 431542  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
temozolomide  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (ISO)
thifluzamide  (ISO)
thioacetamide  (EXP)
trichloroethene  (ISO)
trichostatin A  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. UBXD4, a UBX-containing protein, regulates the cell surface number and stability of alpha3-containing nicotinic acetylcholine receptors. Rezvani K, etal., J Neurosci. 2009 May 27;29(21):6883-96. doi: 10.1523/JNEUROSCI.4723-08.2009.
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:1325562   PMID:15489334   PMID:18086916   PMID:23376485  


Genomics

Comparative Map Data
Kdelr2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21211,138,820 - 11,157,117 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,138,820 - 11,157,153 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1211,946,125 - 11,964,325 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01212,569,412 - 12,587,613 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01211,595,547 - 11,613,739 (-)NCBIRnor_WKY
Rnor_6.01213,192,452 - 13,210,758 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,192,453 - 13,210,758 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,232,465 - 15,250,771 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41211,498,420 - 11,513,595 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11211,524,186 - 11,543,482 (-)NCBI
Celera1212,932,160 - 12,950,458 (-)NCBICelera
Cytogenetic Map12p11NCBI
KDELR2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,461,089 - 6,484,152 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl76,445,953 - 6,484,190 (-)EnsemblGRCh38hg38GRCh38
GRCh3776,500,720 - 6,523,783 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,467,237 - 6,490,374 (-)NCBINCBI36Build 36hg18NCBI36
Build 3476,275,509 - 6,296,940NCBI
Celera76,211,338 - 6,234,431 (+)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,373,518 - 6,395,670 (-)NCBIHuRef
CHM1_176,500,302 - 6,523,431 (-)NCBICHM1_1
T2T-CHM13v2.076,580,398 - 6,603,413 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,547,172 - 6,570,287 (-)NCBI
Kdelr2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,389,575 - 143,407,659 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,389,593 - 143,407,656 (+)EnsemblGRCm39 Ensembl
GRCm385143,403,820 - 143,421,904 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,403,838 - 143,421,901 (+)EnsemblGRCm38mm10GRCm38
MGSCv375144,165,499 - 144,182,955 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365144,165,505 - 144,182,947 (+)NCBIMGSCv36mm8
Celera5140,450,973 - 140,468,362 (+)NCBICelera
Cytogenetic Map5G2NCBI
Kdelr2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,202,401 - 13,221,319 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546013,202,400 - 13,221,319 (+)NCBIChiLan1.0ChiLan1.0
KDELR2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.176,654,430 - 6,667,794 (-)NCBIpanpan1.1PanPan1.1panPan2
Mhudiblu_PPA_v076,960,456 - 6,983,515 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
KDELR2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,796,586 - 11,815,765 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,798,377 - 11,815,760 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,421,923 - 13,441,095 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,798,777 - 11,817,951 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,799,791 - 11,817,956 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,674,580 - 11,693,744 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,654,175 - 11,673,193 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,880,887 - 11,900,112 (-)NCBIUU_Cfam_GSD_1.0
Kdelr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,024,950 - 140,042,738 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493676515,820 - 33,932 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493676516,017 - 33,812 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KDELR2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,716,646 - 4,735,300 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,716,651 - 4,735,303 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
KDELR2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,671,314 - 15,694,192 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2815,672,442 - 15,694,148 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666102377,263 - 401,933 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kdelr2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,853,425 - 30,873,754 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,853,252 - 30,875,730 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Kdelr2
179 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:113
Count of miRNA genes:94
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000001438
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2312418Kidm41Kidney mass QTL 413.70.0001kidney mass (VT:0002707)single kidney wet weight to body weight ratio (CMO:0000622)12119611090Rat
10755457Coatc14Coat color QTL 140.01759coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)12122591684Rat
6893681Bw109Body weight QTL 1092.30.004body mass (VT:0001259)body weight (CMO:0000012)12123297788Rat
1581516Cm56Cardiac mass QTL 564.20.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)12129333307Rat
1598855Bp294Blood pressure QTL 2943.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)12134851688Rat
7411660Foco28Food consumption QTL 2810.90.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
9590086Insglur6Insulin/glucose ratio QTL 618.970.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)12142110980Rat
8694179Bw150Body weight QTL 1502.90.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
7411586Foco5Food consumption QTL 55.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411595Foco9Food consumption QTL 940.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12142110980Rat
7411545Bw128Body weight QTL 1285.20.001body mass (VT:0001259)body weight gain (CMO:0000420)12142110980Rat
9590147Scort7Serum corticosterone level QTL 713.610.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)12142110980Rat
2303575Insul14Insulin level QTL 144blood insulin amount (VT:0001560)blood insulin level (CMO:0000349)12142450532Rat
737979Pia22Pristane induced arthritis QTL 2253.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)12144465750Rat
634351Apr5Acute phase response QTL 56.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)12144503507Rat
2302042Pia38Pristane induced arthritis QTL 383.50.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)12144503507Rat
634350Apr4Acute phase response QTL 46orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)12117200546172005Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)6556449546669029Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449546669029Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)12556449546669029Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)12556449846669029Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)12610757946669029Rat
1600391Edcs2Endometrial carcinoma susceptibility QTL23.50.01uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)12683319017870186Rat
1302792Scl21Serum cholesterol level QTL 213.80.0011blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)12719673046669029Rat
2293086Iddm30Insulin dependent diabetes mellitus QTL 303.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12844949028302290Rat
61331Eau2Experimental allergic uveoretinitis QTL 20.0005uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)12852542328064601Rat
1331739Hrtrt14Heart rate QTL 143.56232heart pumping trait (VT:2000009)heart rate (CMO:0000002)12931821612829686Rat
1300157Rf21Renal function QTL 214.4renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)12931821632103380Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)12960327746669029Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121047413746669029Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121047413746669029Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121107382524234895Rat
1331755Bp219Blood pressure QTL 2193.041arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382528064557Rat
1331761Bp218Blood pressure QTL 2182.973arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)121107382545055165Rat

Markers in Region
BF387279  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21211,156,676 - 11,156,867 (+)MAPPERmRatBN7.2
Rnor_6.01213,210,318 - 13,210,508NCBIRnor6.0
Rnor_5.01215,250,331 - 15,250,521UniSTSRnor5.0
RGSC_v3.41211,513,114 - 11,513,304UniSTSRGSC3.4
Celera1212,950,018 - 12,950,208UniSTS
RH 3.4 Map12158.61UniSTS
Cytogenetic Map12p11UniSTS
BI276615  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1212,932,328 - 12,932,493UniSTS
RH 3.4 Map12156.0UniSTS
Cytogenetic Map12p11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000001438   ⟹   ENSRNOP00000001438
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1211,138,820 - 11,157,153 (-)Ensembl
Rnor_6.0 Ensembl1213,192,453 - 13,210,758 (-)Ensembl
RefSeq Acc Id: NM_001013122   ⟹   NP_001013140
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21211,138,820 - 11,157,117 (-)NCBI
Rnor_6.01213,192,452 - 13,210,758 (-)NCBI
Rnor_5.01215,232,465 - 15,250,771 (-)NCBI
Celera1212,932,160 - 12,950,458 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001013140 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH85786 (Get FASTA)   NCBI Sequence Viewer  
  EDL89668 (Get FASTA)   NCBI Sequence Viewer  
  Q5U305 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001013140   ⟸   NM_001013122
- UniProtKB: Q5U305 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000001438   ⟸   ENSRNOT00000001438

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5U305-F1-model_v2 AlphaFold Q5U305 1-212 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13698439
Promoter ID:EPDNEW_R8964
Type:initiation region
Name:Kdelr2_1
Description:KDEL endoplasmic reticulum protein retention receptor 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01213,210,794 - 13,210,854EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304618 AgrOrtholog
BioCyc Gene G2FUF-20006 BioCyc
Ensembl Genes ENSRNOG00000001083 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000001438.7 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000001438.8 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7108608 IMAGE-MGC_LOAD
InterPro ER_ret_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:304290 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93761 IMAGE-MGC_LOAD
NCBI Gene 304290 ENTREZGENE
PANTHER PTHR10585 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam ER_lumen_recept UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Kdelr2 PhenoGen
PRINTS ERLUMENR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ER_LUMEN_RECEPTOR_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ER_LUMEN_RECEPTOR_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2Q098_RAT UniProtKB/TrEMBL
  ERD22_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-16 Kdelr2  KDEL endoplasmic reticulum protein retention receptor 2  Kdelr2  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-05-24 Kdelr2  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  LOC100360920  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  Data Merged 1643240 APPROVED
2010-05-05 LOC100360920  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-12-06 Kdelr2  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2  Kdelr2_predicted  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Kdelr2_predicted  KDEL (Lys-Asp-Glu-Leu) endoplasmic reticulum protein retention receptor 2 (predicted)      Symbol and Name status set to approved 70820 APPROVED