GWAS1163727_H QTL Report (Homo sapiens) - Rat Genome Database

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QTL Registration

QTL: GWAS1163727_H (monocyte count QTL GWAS1163727 (human)) Homo sapiens

Symbol: GWAS1163727_H
Name: monocyte count QTL GWAS1163727 (human)
RGD ID: 597067653
Trait: monocyte quantity   (VT:0000223)    
Measurement Type: blood monocyte count   (CMO:0000032)    
LOD Score: Not Available
P Value: 9.0E-11
Variance: Not Available
Position
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3876,464,609 - 6,464,610RGD_MAPPER_PIPELINEGRCh38
GRCh3776,504,240 - 6,504,241RGD_MAPPER_PIPELINEGRCh37
Population Stats: Not Available
JBrowse: View Region in Genome Browser (JBrowse)
Model




Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1163727_HHumanblood monocyte count  IAGPrs73057397405850206 GWAS_CATALOGPMID:29403010

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1163727_HHumanmonocyte quantity  IAGPrs73057397405850206 GWAS_CATALOGPMID:29403010

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GWAS1163727_HHumanmonocyte count  IAGPrs73057397405850206 GWAS_CATALOGPMID:29403010

#
Reference Title
Reference Citation
1. RGD GWAS Catalog Import Pipeline RGD pipeline to import data from GWAS Catalog and create human variant and QTL records


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
1312161KDELR2KDEL endoplasmic reticulum protein retention receptor 2764610896484152Human


Peak: (rs73057397)
Human AssemblyChrPosition (strand)Source
GRCh3876,464,609 - 6,464,610RGD_MAPPER_PIPELINE


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1643402BMD2_HBone mineral density QTL 2 (human)2.690.0002Bone mineral density7122435431Human
597067653GWAS1163727_Hmonocyte count QTL GWAS1163727 (human)9e-11monocyte quantity (VT:0000223)blood monocyte count (CMO:0000032)764646096464610Human
1643247BW130_HBody Weight QTL 130 (human)1.280.008Body weightbody mass index7117453493Human
1643391BW322_HBody weight QTL 322 (human)2.690.0002Body fat amount7122435431Human



Data has come from the GWAS Catalog   
The highlighted row represents the current QTL
QTL
GWAS Catalog Study
Disease Trait
Study Size
Risk Allele
Risk Allele Frequency
P Value
P Value MLOG
Peak Marker
Reported Odds Ratio or Beta-coefficient
Ontology Accession
PubMed
GWAS1163727_H GCST005977 Monocyte count 62,076 Japanese ancestry individuals ? NR 9E-11 10.046 rs73057397 0.03907 monocyte count (EFO:0005091)
 PMID:29403010
GWAS1715815_H GCST007841 Height approximately 458,000 European ancestry individuals ? NR 2E-10 9.699 rs73057397 N/A body height (OBA:VT0001253)
 PMID:30595370
Database
Acc Id
Source(s)
GWAS Catalog GCST005977 GWAS Catalog

Note Type Note Reference