Ttk (Ttk protein kinase) - Rat Genome Database

Name: Ttk
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Ttk (Ttk protein kinase) Rattus norvegicus

Analyze

Symbol:

Ttk

Name:

Ttk protein kinase

RGD ID:

1305558

Description:

Predicted to enable identical protein binding activity; kinetochore binding activity; and protein kinase activity. Predicted to be involved in several processes, including negative regulation of metaphase/anaphase transition of cell cycle; peptidyl-serine phosphorylation; and protein localization to kinetochore. Predicted to act upstream of or within female meiosis chromosome segregation; protein localization to organelle; and protein phosphorylation. Predicted to be located in cytoplasm. Predicted to be active in kinetochore; nucleus; and spindle. Orthologous to human TTK (TTK protein kinase); PARTICIPATES IN cell cycle pathway, mitotic; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

dual specificity protein kinase TTK; LOC315852; Monopolar spindle 1; Mps1

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TTK (TTK protein kinase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Ttk (Ttk protein kinase)	HGNC	EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Ttk (TTK protein kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TTK (TTK protein kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TTK (TTK protein kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ttk (TTK protein kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TTK (TTK protein kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TTK (TTK protein kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ttk (TTK protein kinase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TTK (TTK protein kinase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Mus musculus (house mouse):	Ttk (Ttk protein kinase)	Alliance	DIOPT (Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	ttk (ttk protein kinase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	MPS1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Mps1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	84,754,329 - 84,792,653 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	8	84,754,315 - 84,792,651 (+)	Ensembl
Rnor_6.0	8	91,368,065 - 91,405,995 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	91,368,111 - 91,405,993 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	88,906,665 - 88,944,613 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	8	84,402,963 - 84,441,218 (+)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

hepatocellular carcinoma (ISO)

Pancreatic Neoplasms (ISO)

polycystic ovary syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,1-dichloroethene (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3-methylcholanthrene (ISO)

5-azacytidine (ISO)

6-propyl-2-thiouracil (EXP)

7,9-dihydro-1H-purine-2,6,8(3H)-trione (ISO)

acetamide (EXP)

acrylamide (EXP,ISO)

aflatoxin B1 (EXP,ISO)

aflatoxin M1 (ISO)

aristolochic acid (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

choline (ISO)

cisplatin (EXP,ISO)

clofibrate (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cryptolepine (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

Deguelin (ISO)

deoxynivalenol (ISO)

diazinon (EXP)

dibutyl phthalate (ISO)

dichloroacetic acid (ISO)

dicrotophos (ISO)

dieldrin (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

Enterolactone (ISO)

etoposide (ISO)

folic acid (ISO)

fulvestrant (ISO)

furan (EXP)

genistein (ISO)

geraniol (ISO)

GW 4064 (ISO)

irinotecan (ISO)

kojic acid (ISO)

L-methionine (ISO)

leflunomide (ISO)

lithium atom (EXP)

lithium hydride (EXP)

lucanthone (ISO)

methamphetamine (EXP)

methylseleninic acid (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-methyl-N-nitrosourea (ISO)

N-nitrosodiethylamine (ISO)

N-Nitrosopyrrolidine (ISO)

nickel atom (ISO)

nickel dichloride (EXP)

oxaliplatin (EXP)

ozone (ISO)

palbociclib (ISO)

paracetamol (ISO)

PCB138 (ISO)

perfluorononanoic acid (ISO)

phenformin (EXP)

phenobarbital (ISO)

PhIP (ISO)

phytoestrogen (ISO)

picoxystrobin (ISO)

piroxicam (ISO)

potassium chromate (ISO)

propanal (ISO)

pyrimidifen (ISO)

quercetin (ISO)

resveratrol (ISO)

rotenone (EXP,ISO)

SB 431542 (ISO)

SCH 23390 (EXP)

senecionine (EXP)

Senkirkine (EXP)

silicon dioxide (ISO)

sirolimus (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

sunitinib (ISO)

temozolomide (ISO)

testosterone (EXP,ISO)

tetrachloromethane (ISO)

thalidomide (ISO)

thapsigargin (ISO)

thifluzamide (ISO)

titanium dioxide (EXP,ISO)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (EXP)

Triptolide (EXP)

triptonide (ISO)

troglitazone (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

vinclozolin (EXP)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromosome segregation (IBA)

chromosome separation (IEA)

female meiosis chromosome segregation (ISO)

meiotic spindle assembly checkpoint signaling (IBA,ISO)

mitotic spindle assembly checkpoint signaling (IBA,ISO)

peptidyl-serine phosphorylation (IBA,ISO)

peptidyl-threonine phosphorylation (ISO)

peptidyl-tyrosine phosphorylation (ISO)

protein autophosphorylation (ISO)

protein localization to chromosome (ISO)

protein localization to kinetochore (IBA,ISO)

protein localization to meiotic spindle midzone (ISO)

Cellular Component

cytoplasm (ISO)

kinetochore (IBA,ISO)

nucleus (IBA)

spindle (IBA)

Molecular Function

ATP binding (IEA)

identical protein binding (ISO)

kinetochore binding (ISO)

protein binding (ISO)

protein serine/threonine kinase activity (IBA)

protein serine/threonine/tyrosine kinase activity (IBA,ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cell cycle pathway, mitotic (IEA)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA data from the GO Consortium
3.	Pipeline to import KEGG annotations from KEGG into RGD
4.	RGD automated data pipeline
5.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:1375325	PMID:19946888	PMID:21558374	PMID:25197064	PMID:25468996

Genomics

Comparative Map Data

Ttk
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	8	84,754,329 - 84,792,653 (+)	NCBI	mRatBN7.2
mRatBN7.2 Ensembl	8	84,754,315 - 84,792,651 (+)	Ensembl
Rnor_6.0	8	91,368,065 - 91,405,995 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	91,368,111 - 91,405,993 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	88,906,665 - 88,944,613 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	8	84,402,963 - 84,441,218 (+)	NCBI		Celera
Cytogenetic Map	8	q31	NCBI

TTK
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	6	80,003,887 - 80,042,527 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	6	80,004,147 - 80,042,651 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	6	80,714,366 - 80,752,244 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	80,771,078 - 80,808,958 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	6	80,771,077 - 80,808,956	NCBI
Celera	6	81,132,293 - 81,170,226 (+)	NCBI
Cytogenetic Map	6	q14.1	NCBI
HuRef	6	77,937,044 - 77,974,979 (+)	NCBI		HuRef
CHM1_1	6	80,811,776 - 80,849,705 (+)	NCBI		CHM1_1

Ttk
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	83,716,704 - 83,754,443 (+)	NCBI	GRCm39		mm39
GRCm39 Ensembl	9	83,716,742 - 83,754,442 (+)	Ensembl
GRCm38	9	83,834,651 - 83,872,390 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	83,834,689 - 83,872,389 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	83,728,296 - 83,765,997 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	9	83,631,459 - 83,669,102 (+)	NCBI			mm8
Celera	9	80,934,680 - 80,972,688 (+)	NCBI		Celera
Cytogenetic Map	9	E2	NCBI

Ttk
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955502	7,824,194 - 7,866,879 (+)	NCBI	ChiLan1.0	ChiLan1.0

TTK
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	6	81,158,143 - 81,196,478 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	81,158,143 - 81,196,478 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	6	77,887,382 - 77,925,737 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

TTK
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	40,915,733 - 40,959,423 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	40,915,439 - 40,957,279 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	40,787,409 - 40,829,802 (+)	NCBI
ROS_Cfam_1.0	12	41,678,975 - 41,721,444 (+)	NCBI
UMICH_Zoey_3.1	12	40,992,362 - 41,034,814 (+)	NCBI
UNSW_CanFamBas_1.0	12	40,969,244 - 41,011,626 (+)	NCBI
UU_Cfam_GSD_1.0	12	41,120,015 - 41,162,453 (+)	NCBI

Ttk
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	76,256,203 - 76,303,738 (+)	NCBI
SpeTri2.0	NW_004936510	10,176,968 - 10,213,483 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TTK
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	86,076,583 - 86,125,718 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	86,076,576 - 86,125,334 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	96,781,685 - 96,828,277 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TTK
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	4,738,849 - 4,779,563 (+)	NCBI
ChlSab1.1 Ensembl	13	4,738,959 - 4,780,627 (+)	Ensembl
Vero_WHO_p1.0	NW_023666040	180,959,238 - 181,026,938 (+)	NCBI

Ttk
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624819	6,631,697 - 6,682,181 (+)	NCBI

Position Markers

BQ193649

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	84,754,170 - 84,754,344 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	91,367,979 - 91,368,152	NCBI	Rnor6.0
Rnor_5.0	8	90,886,311 - 90,886,484	UniSTS	Rnor5.0
RGSC_v3.4	8	88,906,214 - 88,906,387	UniSTS	RGSC3.4
Celera	8	84,402,512 - 84,402,685	UniSTS
RH 3.4 Map	8	969.09	UniSTS
Cytogenetic Map	8	q31	UniSTS

RH143537

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	84,790,323 - 84,790,480 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	91,403,666 - 91,403,822	NCBI	Rnor6.0
Rnor_5.0	8	90,921,998 - 90,922,154	UniSTS	Rnor5.0
RGSC_v3.4	8	88,942,286 - 88,942,442	UniSTS	RGSC3.4
Celera	8	84,438,891 - 84,439,047	UniSTS
RH 3.4 Map	8	977.6	UniSTS
Cytogenetic Map	8	q31	UniSTS

RH137297

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	84,792,409 - 84,792,609 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	91,405,752 - 91,405,951	NCBI	Rnor6.0
Rnor_5.0	8	90,924,084 - 90,924,283	UniSTS	Rnor5.0
RGSC_v3.4	8	88,944,372 - 88,944,571	UniSTS	RGSC3.4
Celera	8	84,440,977 - 84,441,176	UniSTS
RH 3.4 Map	8	978.3	UniSTS
Cytogenetic Map	8	q31	UniSTS

BM383386

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	84,764,692 - 84,765,340 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	91,378,034 - 91,378,681	NCBI	Rnor6.0
Rnor_5.0	8	90,896,366 - 90,897,013	UniSTS	Rnor5.0
RGSC_v3.4	8	88,916,655 - 88,917,302	UniSTS	RGSC3.4
Celera	8	84,413,261 - 84,413,908	UniSTS
RH 3.4 Map	8	978.5	UniSTS
Cytogenetic Map	8	q31	UniSTS

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
731182	Uae24	Urinary albumin excretion QTL 24	6.4		urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	19331152	93965294	Rat
1358892	Kidm26	Kidney mass QTL 26	3.69		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	27205715	99103503	Rat
1358896	Bp262	Blood pressure QTL 262	2.89		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	27205715	99103503	Rat
1358907	Cm40	Cardiac mass QTL 40	1.89		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	27205715	99103503	Rat
8662823	Vetf5	Vascular elastic tissue fragility QTL 5	1.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	8	28242912	99525068	Rat
1549908	Neudeg1	Neurodegradation QTL 1	5.5	0	nervous system integrity trait (VT:0010566)	logarithm of the ratio of the lesioned side motor neuron count to contralateral side motor neuron count (CMO:0001986)	8	30188867	94457446	Rat
1578755	Pur5	Proteinuria QTL 5	3.3	0.0001	total urine protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	8	30848154	101699754	Rat
1578765	Klgr1	Kidney lesion grade QTL 1	3.3	0.0001	kidney morphology trait (VT:0002135)	organ lesion measurement (CMO:0000677)	8	30848154	101699754	Rat
1578769	Uae31	Urinary albumin excretion QTL 31	3.3	0.001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	8	30848154	101699754	Rat
2316950	Scl66	Serum cholesterol level QTL 66	4.1		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	8	30848259	105647037	Rat
1331838	Niddm61	Non-insulin dependent diabetes mellitus QTL 61	3.53	0.0004	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	8	36469535	99083736	Rat
1358906	Bp253	Blood pressure QTL 253	4	0.0004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	40713066	93965294	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
1298079	Activ2	Activity QTL 2	9.5	0.000001	voluntary movement trait (VT:0003491)	rearing measurement (CMO:0001515)	8	41866876	86866876	Rat
70161	Bp62	Blood pressure QTL 62	2.9	0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	42692684	90165460	Rat
12879882	Am8	Aortic mass QTL 8		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	43296169	98968765	Rat
12879878	Bw183	Body weight QTL 183		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	43296169	98968765	Rat
12879879	Cm99	Cardiac mass QTL 99		0.001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	8	43296169	98968765	Rat
12879880	Cm100	Cardiac mass QTL 100		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	43296169	98968765	Rat
12879881	Cm101	Cardiac mass QTL 101		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	8	43296169	98968765	Rat
12879883	Kidm65	Kidney mass QTL 65		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	8	43296169	98968765	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	8	46531639	119088624	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088624	Rat
1331837	Bw23	Body weight QTL 23	4.19	0.00007	body mass (VT:0001259)	body weight (CMO:0000012)	8	46531722	99083736	Rat
2303570	Gluco48	Glucose level QTL 48	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	8	49805831	94805831	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
10402857	Bp380	Blood pressure QTL 380		0.95	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2301402	Bp316	Blood pressure QTL 316		0.005	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	53968765	98968765	Rat
2293697	Bmd39	Bone mineral density QTL 39			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	8	54043744	98968765	Rat
1582243	Bw66	Body weight QTL 66	3.4	0.0048	body mass (VT:0001259)	body weight (CMO:0000012)	8	54237644	85365202	Rat
1582254	Kidm31	Kidney mass QTL 31	3		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	8	54237644	85365202	Rat
631664	Hcar3	Hepatocarcinoma resistance QTL 3	2.9	0.0005	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	8	54237644	99103503	Rat
1300177	Cm2	Cardiac mass QTL 2	3.65		heart mass (VT:0007028)	heart weight (CMO:0000017)	8	54259986	100382532	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	32
Count of miRNA genes:	25
Interacting mature miRNAs:	31
Transcripts:	ENSRNOT00000051612
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	1	26	24	18	9	18			35	18	35
Low	2	9	22	15	10	15	4	4	39	13	6	11	4
Below cutoff		8	11	8		8	4	7		4			4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243461	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243462	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243464	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006243466	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081525	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081527	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081528	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487829	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005487830	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000051612 ⟹ ENSRNOP00000042156

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	84,754,588 - 84,792,647 (+)	Ensembl
Rnor_6.0 Ensembl	8	91,368,430 - 91,405,993 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000083151 ⟹ ENSRNOP00000072355

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	84,754,315 - 84,792,647 (+)	Ensembl
Rnor_6.0 Ensembl	8	91,368,111 - 91,405,988 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000114297 ⟹ ENSRNOP00000079704

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	84,754,622 - 84,792,651 (+)	Ensembl

RefSeq Acc Id:

NM_001108172 ⟹ NP_001101642

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,622 - 84,792,651 (+)	NCBI
Rnor_6.0	8	91,368,430 - 91,405,993 (+)	NCBI
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI
RGSC_v3.4	8	88,906,665 - 88,944,613 (+)	RGD
Celera	8	84,402,963 - 84,441,218 (+)	RGD

Sequence:

show sequence

GAAATTCAAACGTGTTTCCGGAGAGGGGATGCGGTACCGCTGTTTTGTCTGCAGCCTGGATTTC
TGAGATAGGTTTACAAAACTGACGGTCTGTCTTCCTCATTCTGAAGACGAGTTGCAGTTTAGAG
ATGGAGGCTGAAGAGTTAATTGGCAGAAATTTGACAATTGATTCCATCATGAACAAAGTGAGAG
ACATTAAAAATAAGATAAATGAAGACCTTACTGATGAGCTAAACTCGATCAAAGTCTGTGTTGA
CCCCACAGAAACTGTTAACCAAATTATGATGGTTGAGAACACACCAGAGAACTGGTTGAATTTC
TTGCTGAAACTAGAGAAAAACAGCCCACCTCTAAACGATGCTCTTTTAAATAAGCTGATTGGTC
GGTATAGTCAAGCCATTGAAGCACTTCCTCCAGATAAATATGGCCAGAATGAGAGCTTTGCTCG
AATACAAGTGAGACTTGCAGAATTAAAGGCTATTCAAGAACCTGACGATGCTCACGACTACTTC
CAAATGGCCCGAGAGAACTGCAAGAAGTTTGCTTTCGTGCATGTCTCTTTCGCACAGTTTGAAC
TGTCTCAAGGCAATCTTAAGAAAAGCGAACAGCTTCTTCATAAAGCTGTAGAGACGGGGGCAGT
GCCGCTGCAGATGCTGGAGACTGCCATCCGTAACCTACACCTCCAGAAAAAGCAGCTGCTCTCA
GAGGAGGACAAAAAGAGTTTATCAGCATCTACAGTACTAACTGCCCAAGAATCATTCTCCAGTT
CACTTGGGAATTTACAGAGTAGGAAGAGCAGCTGCGATCCCAAAGTACAGGCTGCTGCAGCCAG
GATTTTATATGGGGAGAACATGCCTCCAAAAGATGCGGAAGTAAGTCATCGAAATCCCTTAAAG
CAAACTAACAAAACTAAACGGTCATGCCCCTTTGGAAGAGTCCCAGTTAATCTTCTAAATAGCC
CAGATTACTATGTGAAGACAGATGGTTCAGCTGTGCCACAGTTTACAAAAAGAAAAATATCTGG
ATCAGAATACCGAGATTCGATTATGCCTGGATCCAAATCAAGTGGAAATGATTCCTATGAATTG
AGAGGTTTAAAGCCCATTCAAGCTATCCATTTGAAAGACTCTCTGGTGTCCAATGAAAAAAGTT
CTGAACTTATGTCTGATTTAGTAACCTTGAAGAGTAAAACGGATTCAAGTCTAACAAAGTTGGA
AGAACCTAAAGTGCGTCAAGAACCGGAGATTCCAGAAAGAAGGCACAAGCAGTGGCAGTCTGCC
AGAAAGCCAGGCTGTGGGATCCAGAACTCGGCTGCCTTTGCCCCCCAGTGGCACGTTCCAGATG
TAACCCCAAAGGCTGATAAAGAGTCACCACCATTATCAGTTCCTAAATGGATTGATCCAAAGTC
TGTCTGTGAGACACCTAGTAGCAGTTCCTTGGATGATTACATGAAATGTTTTAAGACTTCAGTT
GTAAAGAATGAATTCCCACCTGCCTGTCCATCATCAACACCTTACAGCCAACTTGCCCGCCACC
AGCAGCATCAGCAGCAAGGGCTCAGCACTCCTCTTCAAAACTTACAGATTTCAGGATCCTCATC
AATGAGTGAATGCATTTCAGTTAACGGAAGAATTTATTCCATATTAAAACAGATAGGCAGTGGA
GGTTCAAGTAAGGTGTTTCAGGTATTGAATGAGAAGAAACAGATAAACGCTATCAAATACGTGA
ACCTTGAAGACGCAGATAGCCAAACTATTGACAGCTACCGCAATGAGATAGCTTACTTGAACAA
GTTACAGCAGCACAGTGATAAGATCATCCGCCTCTATGACTATGAAATCACGGATCGGTACATC
TACATGGTGATGGAATGTGGAAACATTGACCTGAACAGTTGGCTTAAAAAGAAGAAATCCATCA
ATCCATGGGAACGCAAGAGCTACTGGAAAAACATGTTGGAGGCCGTACACACGATCCATCAACA
TGGCATTGTTCATAGTGATCTCAAGCCTGCTAACTTTCTAATAGTTGACGGAATGCTAAAGCTA
ATTGATTTTGGGATTGCAAACCAAATGCAGCCAGATACAACAAGCATTGTTAAAGATTCTCAGG
TTGGCACAGTAAACTACATGGCCCCAGAAGCAATCAGAGACATGTCTTCTTCAAGAGAAAATGG
GAAAATCAAGACCAAGATAAGTCCCAGAAGTGATGTGTGGTCCTTGGGGTGCATTTTGTACTAT
ATGACCTACGGGAAAACACCATTTCAGCATATCATTAATCAGGTCTCTAAACTACATGCCATAA
TTGACCCTAGTCATGAAATTGAGTTTCCTGAGATTTCAGAAAAAGATCTTCGAGATGTGCTAAA
GTGCTGCCTAGTACGGAACCCTAAAGAGAGGATATCTATCCCCGAGCTCCTCGCACATCCATAT
GTTCAGATTCAGCCCCATCCAGGCAGCCAAATGGCTAAGGAGACCACTGATGAGATGAAATATA
TGTTGGGTCAACTTGTTTGCCTGAATTCTCCTAACTCCATCCTGAAAGCTGCGAAAACCTTGTA
TGAACGTTATAATTGTGGTGAAAGTCAAGCTCCTTCATCATCCAAGACTTCTGACAAAAAGAGA
GAAAGAGAGTGATGCACAGCTTTGCACAAACCAAAACACTAAACGGATTTGTCTGCTACTCCTG
AATCTGAGGAGATTTACCTGTGGGGAACAACCCAAACTTTAGTAGATTATCCTCAGCTGTAAGT
TAACCACTCATGGCACGTGTATATTAAGTCATAGAGTTGTGCTTTTGTTCTACTTTTCTGTAAC
TCTAATCTGTCTGGTAACATTTCACATTTGAAACAGTGGATGATAGCTGGAATGTTGAAGATCT
CTGTAAATAAAGCTTTACCACAGTTCTAG

hide sequence

RefSeq Acc Id:

XM_006243460 ⟹ XP_006243522

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,342 - 84,792,653 (+)	NCBI
Rnor_6.0	8	91,368,065 - 91,405,995 (+)	NCBI
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI

Sequence:

show sequence

AGGGGGGCTCGGAGAGAGGAGCTCAGTCAGGAAGTCCGGACCAGGAAGGGGGGGGACACCAGAA
TTCTAACAAAGGAAAGCGCGTCTTGGGTTGAAGATGAAGCCAGGGTTCCCTGGAGAGTAGCGGA
AAGTTCAGCGAGGGAGCACCAAAGAAAAAGACCCTGACTCCCGGCCGGACCGTGGCAAGCCAGC
CGGGCGAGCTAAAAGACTAGCCCACTCAGCAGGCGTCGGTAATTCCCAAGGACGCTGGAAGTGG
GTGCGTGTGGCCGGTACGCAGAAGGCGGTGCGGCGCAAGGAGCCAATCAGGACCCGCGCTGCCA
CGTGACGAGCCGTAACCAATGGGAGGTGGCGGTGAGGGCAGCGGGGAAATTCAAACGTGTTTCC
GGAGAGGGGATGCGGTACCGCTGTTTTGTCTGCAGCCTGGATTTCTGAGCGGCTATGGCTGAGT
TACTGCGTTGTGGAGAATCGCAGCCAAGAGTGACAGAAAGACTGCAGAGAGTTGACCAGTAACA
AACACATTCATGCAGATGACCGGAACGAGTTGCAGTTTAGAGATGGAGGCTGAAGAGTTAATTG
GCAGAAATTTGACAATTGATTCCATCATGAACAAAGTGAGAGACATTAAAAATAAGATAAATGA
AGACCTTACTGATGAGCTAAACTCGATCAAAGTCTGTGTTGACCCCACAGAAACTGTTAACCAA
ATTATGATGGTTGAGAACACACCAGAGAACTGGTTGAATTTCTTGCTGAAACTAGAGAAAAACA
GCCCACCTCTAAACGATGCTCTTTTAAATAAGCTGATTGGTCGGTATAGTCAAGCCATTGAAGC
ACTTCCTCCAGATAAATATGGCCAGAATGAGAGCTTTGCTCGAATACAAGTGAGACTTGCAGAA
TTAAAGGCTATTCAAGAACCTGACGATGCTCACGACTACTTCCAAATGGCCCGAGAGAACTGCA
AGAAGTTTGCTTTCGTGCATGTCTCTTTCGCACAGTTTGAACTGTCTCAAGGCAATCTTAAGAA
AAGCGAACAGCTTCTTCATAAAGCTGTAGAGACGGGGGCAGTGCCGCTGCAGATGCTGGAGACT
GCCATCCGTAACCTACACCTCCAGAAAAAGCAGCTGCTCTCAGAGGAGGACAAAAAGAGTTTAT
CAGCATCTACAGTACTAACTGCCCAAGAATCATTCTCCAGTTCACTTGGGAATTTACAGAGTAG
GAAGAGCAGCTGCGATCCCAAAGTACAGGCTGCTGCAGCCAGGATTTTATATGGGGAGAACATG
CCTCCAAAAGATGCGGAAGTAAGTCATCGAAATCCCTTAAAGCAAACTAACAAAACTAAACGGT
CATGCCCCTTTGGAAGAGTCCCAGTTAATCTTCTAAATAGCCCAGATTACTATGTGAAGACAGA
TGGTTCAGCTGTGCCACAGTTTACAAAAAGAAAAATATCTGGATCAGAATACCGAGATTCGATT
ATGCCTGGATCCAAATCAAGTGGAAATGATTCCTATGAATTGAGAGGTTTAAAGCCCATTCAAG
CTATCCATTTGAAAGACTCTCTGGTGTCCAATGAAAAAAGTTCTGAACTTATGTCTGATTTAGT
AACCTTGAAGAGTAAAACGGATTCAAGTCTAACAAAGTTGGAAGTTTCAGAACCTAAAGTGCGT
CAAGAACCGGAGATTCCAGAAAGAAGGCACAAGCAGTGGCAGTCTGCCAGAAAGCCAGGCTGTG
GGATCCAGAACTCGGCTGCCTTTGCCCCCCAGTGGCACGTTCCAGATGTAACCCCAAAGGCTGA
TAAAGAGCAGAAGTGTACCACTGTTGAGCAACTTGCCTTTTCTGTTTCAAAGCAGTCACCACCA
TTATCAGTTCCTAAATGGATTGATCCAAAGTCTGTCTGTGAGACACCTAGTAGCAGTTCCTTGG
ATGATTACATGAAATGTTTTAAGACTTCAGTTGTAAAGAATGAATTCCCACCTGCCTGTCCATC
ATCAACACCTTACAGCCAACTTGCCCGCCACCAGCAGCATCAGCAGCAAGGGCTCAGCACTCCT
CTTCAAAACTTACAGATTTCAGGATCCTCATCAATGAGTGAATGCATTTCAGTTAACGGAAGAA
TTTATTCCATATTAAAACAGATAGGCAGTGGAGGTTCAAGTAAGGTGTTTCAGGTATTGAATGA
GAAGAAACAGATAAACGCTATCAAATACGTGAACCTTGAAGACGCAGATAGCCAAACTATTGAC
AGCTACCGCAATGAGATAGCTTACTTGAACAAGTTACAGCAGCACAGTGATAAGATCATCCGCC
TCTATGACTATGAAATCACGGATCGGTACATCTACATGGTGATGGAATGTGGAAACATTGACCT
GAACAGTTGGCTTAAAAAGAAGAAATCCATCAATCCATGGGAACGCAAGAGCTACTGGAAAAAC
ATGTTGGAGGCCGTACACACGATCCATCAACATGGCATTGTTCATAGTGATCTCAAGCCTGCTA
ACTTTCTAATAGTTGACGGAATGCTAAAGCTAATTGATTTTGGGATTGCAAACCAAATGCAGCC
AGATACAACAAGCATTGTTAAAGATTCTCAGGTTGGCACAGTAAACTACATGGCCCCAGAAGCA
ATCAGAGACATGTCTTCTTCAAGAGAAAATGGGAAAATCAAGACCAAGATAAGTCCCAGAAGTG
ATGTGTGGTCCTTGGGGTGCATTTTGTACTATATGACCTACGGGAAAACACCATTTCAGCATAT
CATTAATCAGGTCTCTAAACTACATGCCATAATTGACCCTAGTCATGAAATTGAGTTTCCTGAG
ATTTCAGAAAAAGATCTTCGAGATGTGCTAAAGTGCTGCCTAGTACGGAACCCTAAAGAGAGGA
TATCTATCCCCGAGCTCCTCGCACATCCATATGTTCAGATTCAGCCCCATCCAGGCAGCCAAAT
GGCTAAGGAGACCACTGATGAGATGAAATATATGTTGGGTCAACTTGTTTGCCTGAATTCTCCT
AACTCCATCCTGAAAGCTGCGAAAACCTTGTATGAACGTTATAATTGTGGTGAAAGTCAAGCTC
CTTCATCATCCAAGACTTCTGACAAAAAGAGAGAAAGAGAGTGATGCACAGCTTTGCACAAACC
AAAACACTAAACGGATTTGTCTGCTACTCCTGAATCTGAGGAGATTTACCTGTGGGGAACAACC
CAAACTTTAGTAGATTATCCTCAGCTGTAAGTTAACCACTCATGGCACGTGTATATTAAGTCAT
AGAGTTGTGCTTTTGTTCTACTTTTCTGTAACTCTAATCTGTCTGGTAACATTTCACATTTGAA
ACAGTGGATGATAGCTGGAATGTTGAAGATCTCTGTAAATAAAGCTTTACCACAGTTCTAGAA

hide sequence

RefSeq Acc Id:

XM_006243461 ⟹ XP_006243523

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,344 - 84,792,653 (+)	NCBI
Rnor_6.0	8	91,368,095 - 91,405,995 (+)	NCBI
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI

Sequence:

show sequence

GAAGTCCGGACCAGGAAGGGGGGGGACACCAGAATTCTAACAAAGGAAAGCGCGTCTTGGGTTG
AAGATGAAGCCAGGGTTCCCTGGAGAGTAGCGGAAAGTTCAGCGAGGGAGCACCAAAGAAAAAG
ACCCTGACTCCCGGCCGGACCGTGGCAAGCCAGCCGGGCGAGCTAAAAGACTAGCCCACTCAGC
AGGCGTCGGTAATTCCCAAGGACGCTGGAAGTGGGTGCGTGTGGCCGGTACGCAGAAGGCGGTG
CGGCGCAAGGAGCCAATCAGGACCCGCGCTGCCACGTGACGAGCCGTAACCAATGGGAGGTGGC
GGTGAGGGCAGCGGGGAAATTCAAACGTGTTTCCGGAGAGGGGATGCGGTACCGCTGTTTTGTC
TGCAGCCTGGATTTCTGAGCGGCTATGGCTGAGTTACTGCGTTGTGGAGAATCGCAGCCAAGAG
TGACAGAAAGACTGCAGAGAGTTGACCAGTAACAAACACATTCATGCAGATGACCGGAACGAGT
TGCAGTTTAGAGATGGAGGCTGAAGAGTTAATTGGCAGAAATTTGACAATTGATTCCATCATGA
ACAAAGTGAGAGACATTAAAAATAAGATAAATGAAGACCTTACTGATGAGCTAAACTCGATCAA
AGTCTGTGTTGACCCCACAGAAACTGTTAACCAAATTATGATGGTTGAGAACACACCAGAGAAC
TGGTTGAATTTCTTGCTGAAACTAGAGAAAAACAGCCCACCTCTAAACGATGCTCTTTTAAATA
AGCTGATTGGTCGGTATAGTCAAGCCATTGAAGCACTTCCTCCAGATAAATATGGCCAGAATGA
GAGCTTTGCTCGAATACAAGTGAGACTTGCAGAATTAAAGGCTATTCAAGAACCTGACGATGCT
CACGACTACTTCCAAATGGCCCGAGAGAACTGCAAGAAGTTTGCTTTCGTGCATGTCTCTTTCG
CACAGTTTGAACTGTCTCAAGGCAATCTTAAGAAAAGCGAACAGCTTCTTCATAAAGCTGTAGA
GACGGGGGCAGTGCCGCTGCAGATGCTGGAGACTGCCATCCGTAACCTACACCTCCAGAAAAAG
CAGCTGCTCTCAGAGGAGGACAAAAAGAGTTTATCAGCATCTACAGTACTAACTGCCCAAGAAT
CATTCTCCAGTTCACTTGGGAATTTACAGAGTAGGAAGAGCAGCTGCGATCCCAAAGTACAGGC
TGCTGCAGCCAGGATTTTATATGGGGAGAACATGCCTCCAAAAGATGCGGAAGTAAGTCATCGA
AATCCCTTAAAGCAAACTAACAAAACTAAACGGTCATGCCCCTTTGGAAGAGTCCCAGTTAATC
TTCTAAATAGCCCAGATTACTATGTGAAGACAGATGGTTCAGCTGTGCCACAGTTTACAAAAAG
AAAAATATCTGGATCAGAATACCGAGATTCGATTATGCCTGGATCCAAATCAAGTGGAAATGAT
TCCTATGAATTGAGAGGTTTAAAGCCCATTCAAGCTATCCATTTGAAAGACTCTCTGGTGTCCA
ATGAAAAAAGTTCTGAACTTATGTCTGATTTAGTAACCTTGAAGAGTAAAACGGATTCAAGTCT
AACAAAGTTGGAAGTTTCAGAACCTAAAGTGCGTCAAGAACCGGAGATTCCAGAAAGAAGGCAC
AAGCAGTGGCAGTCTGCCAGAAAGCCAGGCTGTGGGATCCAGAACTCGGCTGCCTTTGCCCCCC
AGTGGCACGTTCCAGATGTAACCCCAAAGGCTGATAAAGAGAAGTGTACCACTGTTGAGCAACT
TGCCTTTTCTGTTTCAAAGCAGTCACCACCATTATCAGTTCCTAAATGGATTGATCCAAAGTCT
GTCTGTGAGACACCTAGTAGCAGTTCCTTGGATGATTACATGAAATGTTTTAAGACTTCAGTTG
TAAAGAATGAATTCCCACCTGCCTGTCCATCATCAACACCTTACAGCCAACTTGCCCGCCACCA
GCAGCATCAGCAGCAAGGGCTCAGCACTCCTCTTCAAAACTTACAGATTTCAGGATCCTCATCA
ATGAGTGAATGCATTTCAGTTAACGGAAGAATTTATTCCATATTAAAACAGATAGGCAGTGGAG
GTTCAAGTAAGGTGTTTCAGGTATTGAATGAGAAGAAACAGATAAACGCTATCAAATACGTGAA
CCTTGAAGACGCAGATAGCCAAACTATTGACAGCTACCGCAATGAGATAGCTTACTTGAACAAG
TTACAGCAGCACAGTGATAAGATCATCCGCCTCTATGACTATGAAATCACGGATCGGTACATCT
ACATGGTGATGGAATGTGGAAACATTGACCTGAACAGTTGGCTTAAAAAGAAGAAATCCATCAA
TCCATGGGAACGCAAGAGCTACTGGAAAAACATGTTGGAGGCCGTACACACGATCCATCAACAT
GGCATTGTTCATAGTGATCTCAAGCCTGCTAACTTTCTAATAGTTGACGGAATGCTAAAGCTAA
TTGATTTTGGGATTGCAAACCAAATGCAGCCAGATACAACAAGCATTGTTAAAGATTCTCAGGT
TGGCACAGTAAACTACATGGCCCCAGAAGCAATCAGAGACATGTCTTCTTCAAGAGAAAATGGG
AAAATCAAGACCAAGATAAGTCCCAGAAGTGATGTGTGGTCCTTGGGGTGCATTTTGTACTATA
TGACCTACGGGAAAACACCATTTCAGCATATCATTAATCAGGTCTCTAAACTACATGCCATAAT
TGACCCTAGTCATGAAATTGAGTTTCCTGAGATTTCAGAAAAAGATCTTCGAGATGTGCTAAAG
TGCTGCCTAGTACGGAACCCTAAAGAGAGGATATCTATCCCCGAGCTCCTCGCACATCCATATG
TTCAGATTCAGCCCCATCCAGGCAGCCAAATGGCTAAGGAGACCACTGATGAGATGAAATATAT
GTTGGGTCAACTTGTTTGCCTGAATTCTCCTAACTCCATCCTGAAAGCTGCGAAAACCTTGTAT
GAACGTTATAATTGTGGTGAAAGTCAAGCTCCTTCATCATCCAAGACTTCTGACAAAAAGAGAG
AAAGAGAGTGATGCACAGCTTTGCACAAACCAAAACACTAAACGGATTTGTCTGCTACTCCTGA
ATCTGAGGAGATTTACCTGTGGGGAACAACCCAAACTTTAGTAGATTATCCTCAGCTGTAAGTT
AACCACTCATGGCACGTGTATATTAAGTCATAGAGTTGTGCTTTTGTTCTACTTTTCTGTAACT
CTAATCTGTCTGGTAACATTTCACATTTGAAACAGTGGATGATAGCTGGAATGTTGAAGATCTC
TGTAAATAAAGCTTTACCACAGTTCTAGAA

hide sequence

RefSeq Acc Id:

XM_006243462 ⟹ XP_006243524

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,343 - 84,792,653 (+)	NCBI
Rnor_6.0	8	91,368,066 - 91,405,995 (+)	NCBI
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI

Sequence:

show sequence

GGGGGGCTCGGAGAGAGGAGCTCAGTCAGGAAGTCCGGACCAGGAAGGGGGGGGACACCAGAAT
TCTAACAAAGGAAAGCGCGTCTTGGGTTGAAGATGAAGCCAGGGTTCCCTGGAGAGTAGCGGAA
AGTTCAGCGAGGGAGCACCAAAGAAAAAGACCCTGACTCCCGGCCGGACCGTGGCAAGCCAGCC
GGGCGAGCTAAAAGACTAGCCCACTCAGCAGGCGTCGGTAATTCCCAAGGACGCTGGAAGTGGG
TGCGTGTGGCCGGTACGCAGAAGGCGGTGCGGCGCAAGGAGCCAATCAGGACCCGCGCTGCCAC
GTGACGAGCCGTAACCAATGGGAGGTGGCGGTGAGGGCAGCGGGGAAATTCAAACGTGTTTCCG
GAGAGGGGATGCGGTACCGCTGTTTTGTCTGCAGCCTGGATTTCTGAGACGAGTTGCAGTTTAG
AGATGGAGGCTGAAGAGTTAATTGGCAGAAATTTGACAATTGATTCCATCATGAACAAAGTGAG
AGACATTAAAAATAAGATAAATGAAGACCTTACTGATGAGCTAAACTCGATCAAAGTCTGTGTT
GACCCCACAGAAACTGTTAACCAAATTATGATGGTTGAGAACACACCAGAGAACTGGTTGAATT
TCTTGCTGAAACTAGAGAAAAACAGCCCACCTCTAAACGATGCTCTTTTAAATAAGCTGATTGG
TCGGTATAGTCAAGCCATTGAAGCACTTCCTCCAGATAAATATGGCCAGAATGAGAGCTTTGCT
CGAATACAAGTGAGACTTGCAGAATTAAAGGCTATTCAAGAACCTGACGATGCTCACGACTACT
TCCAAATGGCCCGAGAGAACTGCAAGAAGTTTGCTTTCGTGCATGTCTCTTTCGCACAGTTTGA
ACTGTCTCAAGGCAATCTTAAGAAAAGCGAACAGCTTCTTCATAAAGCTGTAGAGACGGGGGCA
GTGCCGCTGCAGATGCTGGAGACTGCCATCCGTAACCTACACCTCCAGAAAAAGCAGCTGCTCT
CAGAGGAGGACAAAAAGAGTTTATCAGCATCTACAGTACTAACTGCCCAAGAATCATTCTCCAG
TTCACTTGGGAATTTACAGAGTAGGAAGAGCAGCTGCGATCCCAAAGTACAGGCTGCTGCAGCC
AGGATTTTATATGGGGAGAACATGCCTCCAAAAGATGCGGAAGTAAGTCATCGAAATCCCTTAA
AGCAAACTAACAAAACTAAACGGTCATGCCCCTTTGGAAGAGTCCCAGTTAATCTTCTAAATAG
CCCAGATTACTATGTGAAGACAGATGGTTCAGCTGTGCCACAGTTTACAAAAAGAAAAATATCT
GGATCAGAATACCGAGATTCGATTATGCCTGGATCCAAATCAAGTGGAAATGATTCCTATGAAT
TGAGAGGTTTAAAGCCCATTCAAGCTATCCATTTGAAAGACTCTCTGGTGTCCAATGAAAAAAG
TTCTGAACTTATGTCTGATTTAGTAACCTTGAAGAGTAAAACGGATTCAAGTCTAACAAAGTTG
GAAGTTTCAGAACCTAAAGTGCGTCAAGAACCGGAGATTCCAGAAAGAAGGCACAAGCAGTGGC
AGTCTGCCAGAAAGCCAGGCTGTGGGATCCAGAACTCGGCTGCCTTTGCCCCCCAGTGGCACGT
TCCAGATGTAACCCCAAAGGCTGATAAAGAGCAGAAGTGTACCACTGTTGAGCAACTTGCCTTT
TCTGTTTCAAAGCAGTCACCACCATTATCAGTTCCTAAATGGATTGATCCAAAGTCTGTCTGTG
AGACACCTAGTAGCAGTTCCTTGGATGATTACATGAAATGTTTTAAGACTTCAGTTGTAAAGAA
TGAATTCCCACCTGCCTGTCCATCATCAACACCTTACAGCCAACTTGCCCGCCACCAGCAGCAT
CAGCAGCAAGGGCTCAGCACTCCTCTTCAAAACTTACAGATTTCAGGATCCTCATCAATGAGTG
AATGCATTTCAGTTAACGGAAGAATTTATTCCATATTAAAACAGATAGGCAGTGGAGGTTCAAG
TAAGGTGTTTCAGGTATTGAATGAGAAGAAACAGATAAACGCTATCAAATACGTGAACCTTGAA
GACGCAGATAGCCAAACTATTGACAGCTACCGCAATGAGATAGCTTACTTGAACAAGTTACAGC
AGCACAGTGATAAGATCATCCGCCTCTATGACTATGAAATCACGGATCGGTACATCTACATGGT
GATGGAATGTGGAAACATTGACCTGAACAGTTGGCTTAAAAAGAAGAAATCCATCAATCCATGG
GAACGCAAGAGCTACTGGAAAAACATGTTGGAGGCCGTACACACGATCCATCAACATGGCATTG
TTCATAGTGATCTCAAGCCTGCTAACTTTCTAATAGTTGACGGAATGCTAAAGCTAATTGATTT
TGGGATTGCAAACCAAATGCAGCCAGATACAACAAGCATTGTTAAAGATTCTCAGGTTGGCACA
GTAAACTACATGGCCCCAGAAGCAATCAGAGACATGTCTTCTTCAAGAGAAAATGGGAAAATCA
AGACCAAGATAAGTCCCAGAAGTGATGTGTGGTCCTTGGGGTGCATTTTGTACTATATGACCTA
CGGGAAAACACCATTTCAGCATATCATTAATCAGGTCTCTAAACTACATGCCATAATTGACCCT
AGTCATGAAATTGAGTTTCCTGAGATTTCAGAAAAAGATCTTCGAGATGTGCTAAAGTGCTGCC
TAGTACGGAACCCTAAAGAGAGGATATCTATCCCCGAGCTCCTCGCACATCCATATGTTCAGAT
TCAGCCCCATCCAGGCAGCCAAATGGCTAAGGAGACCACTGATGAGATGAAATATATGTTGGGT
CAACTTGTTTGCCTGAATTCTCCTAACTCCATCCTGAAAGCTGCGAAAACCTTGTATGAACGTT
ATAATTGTGGTGAAAGTCAAGCTCCTTCATCATCCAAGACTTCTGACAAAAAGAGAGAAAGAGA
GTGATGCACAGCTTTGCACAAACCAAAACACTAAACGGATTTGTCTGCTACTCCTGAATCTGAG
GAGATTTACCTGTGGGGAACAACCCAAACTTTAGTAGATTATCCTCAGCTGTAAGTTAACCACT
CATGGCACGTGTATATTAAGTCATAGAGTTGTGCTTTTGTTCTACTTTTCTGTAACTCTAATCT
GTCTGGTAACATTTCACATTTGAAACAGTGGATGATAGCTGGAATGTTGAAGATCTCTGTAAAT
AAAGCTTTACCACAGTTCTAGAA

hide sequence

RefSeq Acc Id:

XM_006243463 ⟹ XP_006243525

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,343 - 84,792,653 (+)	NCBI
Rnor_6.0	8	91,368,066 - 91,405,995 (+)	NCBI
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI

Sequence:

show sequence

GGGGGGCTCGGAGAGAGGAGCTCAGTCAGGAAGTCCGGACCAGGAAGGGGGGGGACACCAGAAT
TCTAACAAAGGAAAGCGCGTCTTGGGTTGAAGATGAAGCCAGGGTTCCCTGGAGAGTAGCGGAA
AGTTCAGCGAGGGAGCACCAAAGAAAAAGACCCTGACTCCCGGCCGGACCGTGGCAAGCCAGCC
GGGCGAGCTAAAAGACTAGCCCACTCAGCAGGCGTCGGTAATTCCCAAGGACGCTGGAAGTGGG
TGCGTGTGGCCGGTACGCAGAAGGCGGTGCGGCGCAAGGAGCCAATCAGGACCCGCGCTGCCAC
GTGACGAGCCGTAACCAATGGGAGGTGGCGGTGAGGGCAGCGGGGAAATTCAAACGTGTTTCCG
GAGAGGGGATGCGGTACCGCTGTTTTGTCTGCAGCCTGGATTTCTGAGATAGGTTTACAAAACT
GACGGTCTGTCTTCCTCATTCTGAAGACGAGTTGCAGTTTAGAGATGGAGGCTGAAGAGTTAAT
TGGCAGAAATTTGACAATTGATTCCATCATGAACAAAGTGAGAGACATTAAAAATAAGATAAAT
GAAGACCTTACTGATGAGCTAAACTCGATCAAAGTCTGTGTTGACCCCACAGAAACTGTTAACC
AAATTATGATGGTTGAGAACACACCAGAGAACTGGTTGAATTTCTTGCTGAAACTAGAGAAAAA
CAGCCCACCTCTAAACGATGCTCTTTTAAATAAGCTGATTGGTCGGTATAGTCAAGCCATTGAA
GCACTTCCTCCAGATAAATATGGCCAGAATGAGAGCTTTGCTCGAATACAAGTGAGACTTGCAG
AATTAAAGGCTATTCAAGAACCTGACGATGCTCACGACTACTTCCAAATGGCCCGAGAGAACTG
CAAGAAGTTTGCTTTCGTGCATGTCTCTTTCGCACAGTTTGAACTGTCTCAAGGCAATCTTAAG
AAAAGCGAACAGCTTCTTCATAAAGCTGTAGAGACGGGGGCAGTGCCGCTGCAGATGCTGGAGA
CTGCCATCCGTAACCTACACCTCCAGAAAAAGCAGCTGCTCTCAGAGGAGGACAAAAAGAGTTT
ATCAGCATCTACAGTACTAACTGCCCAAGAATCATTCTCCAGTTCACTTGGGAATTTACAGAGT
AGGAAGAGCAGCTGCGATCCCAAAGTACAGGCTGCTGCAGCCAGGATTTTATATGGGGAGAACA
TGCCTCCAAAAGATGCGGAAGTAAGTCATCGAAATCCCTTAAAGCAAACTAACAAAACTAAACG
GTCATGCCCCTTTGGAAGAGTCCCAGTTAATCTTCTAAATAGCCCAGATTACTATGTGAAGACA
GATGGTTCAGCTGTGCCACAGTTTACAAAAAGAAAAATATCTGGATCAGAATACCGAGATTCGA
TTATGCCTGGATCCAAATCAAGTGGAAATGATTCCTATGAATTGAGAGGTTTAAAGCCCATTCA
AGCTATCCATTTGAAAGACTCTCTGGTGTCCAATGAAAAAAGTTCTGAACTTATGTCTGATTTA
GTAACCTTGAAGAGTAAAACGGATTCAAGTCTAACAAAGTTGGAAGTTTCAGAACCTAAAGTGC
GTCAAGAACCGGAGATTCCAGAAAGAAGGCACAAGCAGTGGCAGTCTGCCAGAAAGCCAGGCTG
TGGGATCCAGAACTCGGCTGCCTTTGCCCCCCAGTGGCACGTTCCAGATGTAACCCCAAAGGCT
GATAAAGAGCAGAAGTGTACCACTGTTGAGCAACTTGCCTTTTCTGTTTCAAAGCAGTCACCAC
CATTATCAGTTCCTAAATGGATTGATCCAAAGTCTGTCTGTGAGACACCTAGTAGCAGTTCCTT
GGATGATTACATGAAATGTTTTAAGACTTCAGTTGTAAAGAATGAATTCCCACCTGCCTGTCCA
TCATCAACACCTTACAGCCAACTTGCCCGCCACCAGCAGCATCAGCAGCAAGGGCTCAGCACTC
CTCTTCAAAACTTACAGATTTCAGGATCCTCATCAATGAGTGAATGCATTTCAGTTAACGGAAG
AATTTATTCCATATTAAAACAGATAGGCAGTGGAGGTTCAAGTAAGGTGTTTCAGGTATTGAAT
GAGAAGAAACAGATAAACGCTATCAAATACGTGAACCTTGAAGACGCAGATAGCCAAACTATTG
ACAGCTACCGCAATGAGATAGCTTACTTGAACAAGTTACAGCAGCACAGTGATAAGATCATCCG
CCTCTATGACTATGAAATCACGGATCGGTACATCTACATGGTGATGGAATGTGGAAACATTGAC
CTGAACAGTTGGCTTAAAAAGAAGAAATCCATCAATCCATGGGAACGCAAGAGCTACTGGAAAA
ACATGTTGGAGGCCGTACACACGATCCATCAACATGGCATTGTTCATAGTGATCTCAAGCCTGC
TAACTTTCTAATAGTTGACGGAATGCTAAAGCTAATTGATTTTGGGATTGCAAACCAAATGCAG
CCAGATACAACAAGCATTGTTAAAGATTCTCAGGTTGGCACAGTAAACTACATGGCCCCAGAAG
CAATCAGAGACATGTCTTCTTCAAGAGAAAATGGGAAAATCAAGACCAAGATAAGTCCCAGAAG
TGATGTGTGGTCCTTGGGGTGCATTTTGTACTATATGACCTACGGGAAAACACCATTTCAGCAT
ATCATTAATCAGGTCTCTAAACTACATGCCATAATTGACCCTAGTCATGAAATTGAGTTTCCTG
AGATTTCAGAAAAAGATCTTCGAGATGTGCTAAAGTGCTGCCTAGTACGGAACCCTAAAGAGAG
GATATCTATCCCCGAGCTCCTCGCACATCCATATGTTCAGATTCAGCCCCATCCAGGCAGCCAA
ATGGCTAAGGAGACCACTGATGAGATGAAATATATGTTGGGTCAACTTGTTTGCCTGAATTCTC
CTAACTCCATCCTGAAAGCTGCGAAAACCTTGTATGAACGTTATAATTGTGGTGAAAGTCAAGC
TCCTTCATCATCCAAGACTTCTGACAAAAAGAGAGAAAGAGAGTGATGCACAGCTTTGCACAAA
CCAAAACACTAAACGGATTTGTCTGCTACTCCTGAATCTGAGGAGATTTACCTGTGGGGAACAA
CCCAAACTTTAGTAGATTATCCTCAGCTGTAAGTTAACCACTCATGGCACGTGTATATTAAGTC
ATAGAGTTGTGCTTTTGTTCTACTTTTCTGTAACTCTAATCTGTCTGGTAACATTTCACATTTG
AAACAGTGGATGATAGCTGGAATGTTGAAGATCTCTGTAAATAAAGCTTTACCACAGTTCTAGA
A

hide sequence

RefSeq Acc Id:

XM_006243464 ⟹ XP_006243526

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,976 - 84,792,653 (+)	NCBI
Rnor_6.0	8	91,368,066 - 91,405,995 (+)	NCBI
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI

Sequence:

show sequence

GGGGGGCTCGGAGAGAGGAGCTCAGTCAGGAAGTCCGGACCAGGAAGGGGGGGGACACCAGAAT
TCTAACAAAGGAAAGCGCGTCTTGGGTTGAAGATGAAGCCAGGGTTCCCTGGAGAGTAGCGGAA
AGTTCAGCGAGGGAGCACCAAAGAAAAAGACCCTGACTCCCGGCCGGACCGTGGCAAGCCAGCC
GGGCGAGCTAAAAGACTAGCCCACTCAGCAGGCGTCGGTAATTCCCAAGGACGCTGGAAGTGGG
TGCGTGTGGCCGGTACGCAGAAGGCGGTGCGGCGCAAGGAGCCAATCAGGACCCGCGCTGCCAC
GTGACGAGCCGTAACCAATGGGAGGTGGCGGTGAGGGCAGCGGGGAAATTCAAACGTGTTTCCG
GAGAGGGGATGCGGTACCGCTGTTTTGTCTGCAGCCTGGATTTCTGAGCGGCTATGGCTGAGTT
ACTGCGTTGTGGAGAATCGCAGCCAAGAGTGACAGAAAGACTGCAGAGAGTTGACCAGTAACAA
ACACATTCATGCAGATGACCGGAATAGGTTTACAAAACTGACGGTCTGTCTTCCTCATTCTGAA
GACGAGTTGCAGTTTAGAGATGGAGGCTGAAGAGTTAATTGGCAGAAATTTGACAATTGATTCC
ATCATGAACAAAGTGAGAGACATTAAAAATAAGATAAATGAAGACCTTACTGATGAGCTAAACT
CGATCAAAGTCTGTGTTGACCCCACAGAAACTGTTAACCAAATTATGATGGTTGAGAACACACC
AGAGAACTGGTTGAATTTCTTGCTGAAACTAGAGAAAAACAGCCCACCTCTAAACGATGCTCTT
TTAAATAAGCTGATTGGTCGGTATAGTCAAGCCATTGAAGCACTTCCTCCAGATAAATATGGCC
AGAATGAGAGCTTTGCTCGAATACAAGTGAGACTTGCAGAATTAAAGGCTATTCAAGAACCTGA
CGATGCTCACGACTACTTCCAAATGGCCCGAGAGAACTGCAAGAAGTTTGCTTTCGTGCATGTC
TCTTTCGCACAGTTTGAACTGTCTCAAGGCAATCTTAAGAAAAGCGAACAGCTTCTTCATAAAG
CTGTAGAGACGGGGGCAGTGCCGCTGCAGATGCTGGAGACTGCCATCCGTAACCTACACCTCCA
GAAAAAGCAGCTGCTCTCAGAGGAGGACAAAAAGAGTTTATCAGCATCTACAGTACTAACTGCC
CAAGAATCATTCTCCAGTTCACTTGGGAATTTACAGAGTAGGAAGAGCAGCTGCGATCCCAAAG
TACAGGCTGCTGCAGCCAGGATTTTATATGGGGAGAACATGCCTCCAAAAGATGCGGAAGTAAG
TCATCGAAATCCCTTAAAGCAAACTAACAAAACTAAACGGTCATGCCCCTTTGGAAGAGTCCCA
GTTAATCTTCTAAATAGCCCAGATTACTATGTGAAGACAGATGGTTCAGCTGTGCCACAGTTTA
CAAAAAGAAAAATATCTGGATCAGAATACCGAGATTCGATTATGCCTGGATCCAAATCAAGTGG
AAATGATTCCTATGAATTGAGAGGTTTAAAGCCCATTCAAGCTATCCATTTGAAAGACTCTCTG
GTGTCCAATGAAAAAAGTTCTGAACTTATGTCTGATTTAGTAACCTTGAAGAGTAAAACGGATT
CAAGTCTAACAAAGTTGGAAGTTTCAGAACCTAAAGTGCGTCAAGAACCGGAGATTCCAGAAAG
AAGGCACAAGCAGTGGCAGTCTGCCAGAAAGCCAGGCTGTGGGATCCAGAACTCGGCTGCCTTT
GCCCCCCAGTGGCACGTTCCAGATGTAACCCCAAAGGCTGATAAAGAGCAGAAGTGTACCACTG
TTGAGCAACTTGCCTTTTCTGTTTCAAAGCAGTCACCACCATTATCAGTTCCTAAATGGATTGA
TCCAAAGTCTGTCTGTGAGACACCTAGTAGCAGTTCCTTGGATGATTACATGAAATGTTTTAAG
ACTTCAGTTGTAAAGAATGAATTCCCACCTGCCTGTCCATCATCAACACCTTACAGCCAACTTG
CCCGCCACCAGCAGCATCAGCAGCAAGGGCTCAGCACTCCTCTTCAAAACTTACAGATTTCAGG
ATCCTCATCAATGAGTGAATGCATTTCAGTTAACGGAAGAATTTATTCCATATTAAAACAGATA
GGCAGTGGAGGTTCAAGTAAGGTGTTTCAGGTATTGAATGAGAAGAAACAGATAAACGCTATCA
AATACGTGAACCTTGAAGACGCAGATAGCCAAACTATTGACAGCTACCGCAATGAGATAGCTTA
CTTGAACAAGTTACAGCAGCACAGTGATAAGATCATCCGCCTCTATGACTATGAAATCACGGAT
CGGTACATCTACATGGTGATGGAATGTGGAAACATTGACCTGAACAGTTGGCTTAAAAAGAAGA
AATCCATCAATCCATGGGAACGCAAGAGCTACTGGAAAAACATGTTGGAGGCCGTACACACGAT
CCATCAACATGGCATTGTTCATAGTGATCTCAAGCCTGCTAACTTTCTAATAGTTGACGGAATG
CTAAAGCTAATTGATTTTGGGATTGCAAACCAAATGCAGCCAGATACAACAAGCATTGTTAAAG
ATTCTCAGGTTGGCACAGTAAACTACATGGCCCCAGAAGCAATCAGAGACATGTCTTCTTCAAG
AGAAAATGGGAAAATCAAGACCAAGATAAGTCCCAGAAGTGATGTGTGGTCCTTGGGGTGCATT
TTGTACTATATGACCTACGGGAAAACACCATTTCAGCATATCATTAATCAGGTCTCTAAACTAC
ATGCCATAATTGACCCTAGTCATGAAATTGAGTTTCCTGAGATTTCAGAAAAAGATCTTCGAGA
TGTGCTAAAGTGCTGCCTAGTACGGAACCCTAAAGAGAGGATATCTATCCCCGAGCTCCTCGCA
CATCCATATGTTCAGATTCAGCCCCATCCAGGCAGCCAAATGGCTAAGGAGACCACTGATGAGA
TGAAATATATGTTGGGTCAACTTGTTTGCCTGAATTCTCCTAACTCCATCCTGAAAGCTGCGAA
AACCTTGTATGAACGTTATAATTGTGGTGAAAGTCAAGCTCCTTCATCATCCAAGACTTCTGAC
AAAAAGAGAGAAAGAGAGTGATGCACAGCTTTGCACAAACCAAAACACTAAACGGATTTGTCTG
CTACTCCTGAATCTGAGGAGATTTACCTGTGGGGAACAACCCAAACTTTAGTAGATTATCCTCA
GCTGTAAGTTAACCACTCATGGCACGTGTATATTAAGTCATAGAGTTGTGCTTTTGTTCTACTT
TTCTGTAACTCTAATCTGTCTGGTAACATTTCACATTTGAAACAGTGGATGATAGCTGGAATGT
TGAAGATCTCTGTAAATAAAGCTTTACCACAGTTCTAGAA

hide sequence

RefSeq Acc Id:

XM_006243465 ⟹ XP_006243527

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,343 - 84,792,653 (+)	NCBI
Rnor_6.0	8	91,368,066 - 91,405,995 (+)	NCBI
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI

Sequence:

show sequence

GGGGGGCTCGGAGAGAGGAGCTCAGTCAGGAAGTCCGGACCAGGAAGGGGGGGGACACCAGAAT
TCTAACAAAGGAAAGCGCGTCTTGGGTTGAAGATGAAGCCAGGGTTCCCTGGAGAGTAGCGGAA
AGTTCAGCGAGGGAGCACCAAAGAAAAAGACCCTGACTCCCGGCCGGACCGTGGCAAGCCAGCC
GGGCGAGCTAAAAGACTAGCCCACTCAGCAGGCGTCGGTAATTCCCAAGGACGCTGGAAGTGGG
TGCGTGTGGCCGGTACGCAGAAGGCGGTGCGGCGCAAGGAGCCAATCAGGACCCGCGCTGCCAC
GTGACGAGCCGTAACCAATGGGAGGTGGCGGTGAGGGCAGCGGGGAAATTCAAACGTGTTTCCG
GAGAGGGGATGCGGTACCGCTGTTTTGTCTGCAGCCTGGATTTCTGAGGTTTACAAAACTGACG
GTCTGTCTTCCTCATTCTGAAGACGAGTTGCAGTTTAGAGATGGAGGCTGAAGAGTTAATTGGC
AGAAATTTGACAATTGATTCCATCATGAACAAAGTGAGAGACATTAAAAATAAGATAAATGAAG
ACCTTACTGATGAGCTAAACTCGATCAAAGTCTGTGTTGACCCCACAGAAACTGTTAACCAAAT
TATGATGGTTGAGAACACACCAGAGAACTGGTTGAATTTCTTGCTGAAACTAGAGAAAAACAGC
CCACCTCTAAACGATGCTCTTTTAAATAAGCTGATTGGTCGGTATAGTCAAGCCATTGAAGCAC
TTCCTCCAGATAAATATGGCCAGAATGAGAGCTTTGCTCGAATACAAGTGAGACTTGCAGAATT
AAAGGCTATTCAAGAACCTGACGATGCTCACGACTACTTCCAAATGGCCCGAGAGAACTGCAAG
AAGTTTGCTTTCGTGCATGTCTCTTTCGCACAGTTTGAACTGTCTCAAGGCAATCTTAAGAAAA
GCGAACAGCTTCTTCATAAAGCTGTAGAGACGGGGGCAGTGCCGCTGCAGATGCTGGAGACTGC
CATCCGTAACCTACACCTCCAGAAAAAGCAGCTGCTCTCAGAGGAGGACAAAAAGAGTTTATCA
GCATCTACAGTACTAACTGCCCAAGAATCATTCTCCAGTTCACTTGGGAATTTACAGAGTAGGA
AGAGCAGCTGCGATCCCAAAGTACAGGCTGCTGCAGCCAGGATTTTATATGGGGAGAACATGCC
TCCAAAAGATGCGGAAGTAAGTCATCGAAATCCCTTAAAGCAAACTAACAAAACTAAACGGTCA
TGCCCCTTTGGAAGAGTCCCAGTTAATCTTCTAAATAGCCCAGATTACTATGTGAAGACAGATG
GTTCAGCTGTGCCACAGTTTACAAAAAGAAAAATATCTGGATCAGAATACCGAGATTCGATTAT
GCCTGGATCCAAATCAAGTGGAAATGATTCCTATGAATTGAGAGGTTTAAAGCCCATTCAAGCT
ATCCATTTGAAAGACTCTCTGGTGTCCAATGAAAAAAGTTCTGAACTTATGTCTGATTTAGTAA
CCTTGAAGAGTAAAACGGATTCAAGTCTAACAAAGTTGGAAGTTTCAGAACCTAAAGTGCGTCA
AGAACCGGAGATTCCAGAAAGAAGGCACAAGCAGTGGCAGTCTGCCAGAAAGCCAGGCTGTGGG
ATCCAGAACTCGGCTGCCTTTGCCCCCCAGTGGCACGTTCCAGATGTAACCCCAAAGGCTGATA
AAGAGCAGAAGTGTACCACTGTTGAGCAACTTGCCTTTTCTGTTTCAAAGCAGTCACCACCATT
ATCAGTTCCTAAATGGATTGATCCAAAGTCTGTCTGTGAGACACCTAGTAGCAGTTCCTTGGAT
GATTACATGAAATGTTTTAAGACTTCAGTTGTAAAGAATGAATTCCCACCTGCCTGTCCATCAT
CAACACCTTACAGCCAACTTGCCCGCCACCAGCAGCATCAGCAGCAAGGGCTCAGCACTCCTCT
TCAAAACTTACAGATTTCAGGATCCTCATCAATGAGTGAATGCATTTCAGTTAACGGAAGAATT
TATTCCATATTAAAACAGATAGGCAGTGGAGGTTCAAGTAAGGTGTTTCAGGTATTGAATGAGA
AGAAACAGATAAACGCTATCAAATACGTGAACCTTGAAGACGCAGATAGCCAAACTATTGACAG
CTACCGCAATGAGATAGCTTACTTGAACAAGTTACAGCAGCACAGTGATAAGATCATCCGCCTC
TATGACTATGAAATCACGGATCGGTACATCTACATGGTGATGGAATGTGGAAACATTGACCTGA
ACAGTTGGCTTAAAAAGAAGAAATCCATCAATCCATGGGAACGCAAGAGCTACTGGAAAAACAT
GTTGGAGGCCGTACACACGATCCATCAACATGGCATTGTTCATAGTGATCTCAAGCCTGCTAAC
TTTCTAATAGTTGACGGAATGCTAAAGCTAATTGATTTTGGGATTGCAAACCAAATGCAGCCAG
ATACAACAAGCATTGTTAAAGATTCTCAGGTTGGCACAGTAAACTACATGGCCCCAGAAGCAAT
CAGAGACATGTCTTCTTCAAGAGAAAATGGGAAAATCAAGACCAAGATAAGTCCCAGAAGTGAT
GTGTGGTCCTTGGGGTGCATTTTGTACTATATGACCTACGGGAAAACACCATTTCAGCATATCA
TTAATCAGGTCTCTAAACTACATGCCATAATTGACCCTAGTCATGAAATTGAGTTTCCTGAGAT
TTCAGAAAAAGATCTTCGAGATGTGCTAAAGTGCTGCCTAGTACGGAACCCTAAAGAGAGGATA
TCTATCCCCGAGCTCCTCGCACATCCATATGTTCAGATTCAGCCCCATCCAGGCAGCCAAATGG
CTAAGGAGACCACTGATGAGATGAAATATATGTTGGGTCAACTTGTTTGCCTGAATTCTCCTAA
CTCCATCCTGAAAGCTGCGAAAACCTTGTATGAACGTTATAATTGTGGTGAAAGTCAAGCTCCT
TCATCATCCAAGACTTCTGACAAAAAGAGAGAAAGAGAGTGATGCACAGCTTTGCACAAACCAA
AACACTAAACGGATTTGTCTGCTACTCCTGAATCTGAGGAGATTTACCTGTGGGGAACAACCCA
AACTTTAGTAGATTATCCTCAGCTGTAAGTTAACCACTCATGGCACGTGTATATTAAGTCATAG
AGTTGTGCTTTTGTTCTACTTTTCTGTAACTCTAATCTGTCTGGTAACATTTCACATTTGAAAC
AGTGGATGATAGCTGGAATGTTGAAGATCTCTGTAAATAAAGCTTTACCACAGTTCTAGAA

hide sequence

RefSeq Acc Id:

XM_006243466 ⟹ XP_006243528

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,755,098 - 84,792,653 (+)	NCBI
Rnor_6.0	8	91,368,893 - 91,405,995 (+)	NCBI
Rnor_5.0	8	90,886,724 - 90,924,327 (+)	NCBI

Sequence:

show sequence

GCGCAAGTACTGTGACAGTACCTAGAACCTTGCATTAGAATGTTAAAAGCACAAATAATGGTTT
TCGTCGGGGACAAACTGCTGAAAGTCAGTTATCAATAGAAGGATGCAGAATGCTCTCAATGTCA
GTATTTACTCTGACAGAGTAGGCGACCAAAGGGACAACTTATTCTCATTACCAAACGGATTCTA
TATGTCTTCTCAATCACTACCAGAATCCAAGAAAACAGGGCTCTCCTCTCCTTTTTCTTTTTAA
ATGATGAAATCTACTGACTGCCCAGAGGAAAAAAAAATTCTAGAAAAAAAGTGAAAGGAAGACA
TTCAGTGAGAAGTCGTGTTTTAAAAGGCATCAGCTGGACGTAGTGGTATATATATGTACACCTA
GTGCTTGGACAATGAAACATGACCAGCTGCAGATATAGAGAGATCAAGGCCATCCTAGGCTTCT
TAACACCTTTAAAAACACAAAAATGGACAACAGATTTTCATGTGGGCAGTTATCTCCCAGGTTC
ACACAGTGTAACCTCAATGTTACTTTATACTGGGAAGGATAGATGTGTTTTGGTTCCTTGAAAC
TATTCTGACGAGTTGCAGTTTAGAGATGGAGGCTGAAGAGTTAATTGGCAGAAATTTGACAATT
GATTCCATCATGAACAAAGTGAGAGACATTAAAAATAAGATAAATGAAGACCTTACTGATGAGC
TAAACTCGATCAAAGTCTGTGTTGACCCCACAGAAACTGTTAACCAAATTATGATGGTTGAGAA
CACACCAGAGAACTGGTTGAATTTCTTGCTGAAACTAGAGAAAAACAGCCCACCTCTAAACGAT
GCTCTTTTAAATAAGCTGATTGGTCGGTATAGTCAAGCCATTGAAGCACTTCCTCCAGATAAAT
ATGGCCAGAATGAGAGCTTTGCTCGAATACAAGTGAGACTTGCAGAATTAAAGGCTATTCAAGA
ACCTGACGATGCTCACGACTACTTCCAAATGGCCCGAGAGAACTGCAAGAAGTTTGCTTTCGTG
CATGTCTCTTTCGCACAGTTTGAACTGTCTCAAGGCAATCTTAAGAAAAGCGAACAGCTTCTTC
ATAAAGCTGTAGAGACGGGGGCAGTGCCGCTGCAGATGCTGGAGACTGCCATCCGTAACCTACA
CCTCCAGAAAAAGCAGCTGCTCTCAGAGGAGGACAAAAAGAGTTTATCAGCATCTACAGTACTA
ACTGCCCAAGAATCATTCTCCAGTTCACTTGGGAATTTACAGAGTAGGAAGAGCAGCTGCGATC
CCAAAGTACAGGCTGCTGCAGCCAGGATTTTATATGGGGAGAACATGCCTCCAAAAGATGCGGA
AGTAAGTCATCGAAATCCCTTAAAGCAAACTAACAAAACTAAACGGTCATGCCCCTTTGGAAGA
GTCCCAGTTAATCTTCTAAATAGCCCAGATTACTATGTGAAGACAGATGGTTCAGCTGTGCCAC
AGTTTACAAAAAGAAAAATATCTGGATCAGAATACCGAGATTCGATTATGCCTGGATCCAAATC
AAGTGGAAATGATTCCTATGAATTGAGAGGTTTAAAGCCCATTCAAGCTATCCATTTGAAAGAC
TCTCTGGTGTCCAATGAAAAAAGTTCTGAACTTATGTCTGATTTAGTAACCTTGAAGAGTAAAA
CGGATTCAAGTCTAACAAAGTTGGAAGTTTCAGAACCTAAAGTGCGTCAAGAACCGGAGATTCC
AGAAAGAAGGCACAAGCAGTGGCAGTCTGCCAGAAAGCCAGGCTGTGGGATCCAGAACTCGGCT
GCCTTTGCCCCCCAGTGGCACGTTCCAGATGTAACCCCAAAGGCTGATAAAGAGCAGAAGTGTA
CCACTGTTGAGCAACTTGCCTTTTCTGTTTCAAAGCAGTCACCACCATTATCAGTTCCTAAATG
GATTGATCCAAAGTCTGTCTGTGAGACACCTAGTAGCAGTTCCTTGGATGATTACATGAAATGT
TTTAAGACTTCAGTTGTAAAGAATGAATTCCCACCTGCCTGTCCATCATCAACACCTTACAGCC
AACTTGCCCGCCACCAGCAGCATCAGCAGCAAGGGCTCAGCACTCCTCTTCAAAACTTACAGAT
TTCAGGATCCTCATCAATGAGTGAATGCATTTCAGTTAACGGAAGAATTTATTCCATATTAAAA
CAGATAGGCAGTGGAGGTTCAAGTAAGGTGTTTCAGGTATTGAATGAGAAGAAACAGATAAACG
CTATCAAATACGTGAACCTTGAAGACGCAGATAGCCAAACTATTGACAGCTACCGCAATGAGAT
AGCTTACTTGAACAAGTTACAGCAGCACAGTGATAAGATCATCCGCCTCTATGACTATGAAATC
ACGGATCGGTACATCTACATGGTGATGGAATGTGGAAACATTGACCTGAACAGTTGGCTTAAAA
AGAAGAAATCCATCAATCCATGGGAACGCAAGAGCTACTGGAAAAACATGTTGGAGGCCGTACA
CACGATCCATCAACATGGCATTGTTCATAGTGATCTCAAGCCTGCTAACTTTCTAATAGTTGAC
GGAATGCTAAAGCTAATTGATTTTGGGATTGCAAACCAAATGCAGCCAGATACAACAAGCATTG
TTAAAGATTCTCAGGTTGGCACAGTAAACTACATGGCCCCAGAAGCAATCAGAGACATGTCTTC
TTCAAGAGAAAATGGGAAAATCAAGACCAAGATAAGTCCCAGAAGTGATGTGTGGTCCTTGGGG
TGCATTTTGTACTATATGACCTACGGGAAAACACCATTTCAGCATATCATTAATCAGGTCTCTA
AACTACATGCCATAATTGACCCTAGTCATGAAATTGAGTTTCCTGAGATTTCAGAAAAAGATCT
TCGAGATGTGCTAAAGTGCTGCCTAGTACGGAACCCTAAAGAGAGGATATCTATCCCCGAGCTC
CTCGCACATCCATATGTTCAGATTCAGCCCCATCCAGGCAGCCAAATGGCTAAGGAGACCACTG
ATGAGATGAAATATATGTTGGGTCAACTTGTTTGCCTGAATTCTCCTAACTCCATCCTGAAAGC
TGCGAAAACCTTGTATGAACGTTATAATTGTGGTGAAAGTCAAGCTCCTTCATCATCCAAGACT
TCTGACAAAAAGAGAGAAAGAGAGTGATGCACAGCTTTGCACAAACCAAAACACTAAACGGATT
TGTCTGCTACTCCTGAATCTGAGGAGATTTACCTGTGGGGAACAACCCAAACTTTAGTAGATTA
TCCTCAGCTGTAAGTTAACCACTCATGGCACGTGTATATTAAGTCATAGAGTTGTGCTTTTGTT
CTACTTTTCTGTAACTCTAATCTGTCTGGTAACATTTCACATTTGAAACAGTGGATGATAGCTG
GAATGTTGAAGATCTCTGTAAATAAAGCTTTACCACAGTTCTAGAA

hide sequence

RefSeq Acc Id:

XM_039081525 ⟹ XP_038937453

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,345 - 84,792,653 (+)	NCBI

RefSeq Acc Id:

XM_039081526 ⟹ XP_038937454

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,344 - 84,792,653 (+)	NCBI

RefSeq Acc Id:

XM_039081527 ⟹ XP_038937455

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,342 - 84,792,653 (+)	NCBI

RefSeq Acc Id:

XM_039081528 ⟹ XP_038937456

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,342 - 84,792,653 (+)	NCBI

RefSeq Acc Id:

XR_005487829

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,329 - 84,783,636 (+)	NCBI

RefSeq Acc Id:

XR_005487830

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	8	84,754,330 - 84,783,636 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001101642	(Get FASTA)	NCBI Sequence Viewer
	XP_006243522	(Get FASTA)	NCBI Sequence Viewer
	XP_006243523	(Get FASTA)	NCBI Sequence Viewer
	XP_006243524	(Get FASTA)	NCBI Sequence Viewer
	XP_006243525	(Get FASTA)	NCBI Sequence Viewer
	XP_006243526	(Get FASTA)	NCBI Sequence Viewer
	XP_006243527	(Get FASTA)	NCBI Sequence Viewer
	XP_006243528	(Get FASTA)	NCBI Sequence Viewer
	XP_038937453	(Get FASTA)	NCBI Sequence Viewer
	XP_038937454	(Get FASTA)	NCBI Sequence Viewer
	XP_038937455	(Get FASTA)	NCBI Sequence Viewer
	XP_038937456	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL77653	(Get FASTA)	NCBI Sequence Viewer
	EDL77654	(Get FASTA)	NCBI Sequence Viewer
	EDL77655	(Get FASTA)	NCBI Sequence Viewer
	EDL77656	(Get FASTA)	NCBI Sequence Viewer
	EDL77657	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001101642 ⟸ NM_001108172

- UniProtKB:

D4A4S7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEAEELIGRNLTIDSIMNKVRDIKNKINEDLTDELNSIKVCVDPTETVNQIMMVENTPENWLNF
LLKLEKNSPPLNDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRLAELKAIQEPDDAHDYF
QMARENCKKFAFVHVSFAQFELSQGNLKKSEQLLHKAVETGAVPLQMLETAIRNLHLQKKQLLS
EEDKKSLSASTVLTAQESFSSSLGNLQSRKSSCDPKVQAAAARILYGENMPPKDAEVSHRNPLK
QTNKTKRSCPFGRVPVNLLNSPDYYVKTDGSAVPQFTKRKISGSEYRDSIMPGSKSSGNDSYEL
RGLKPIQAIHLKDSLVSNEKSSELMSDLVTLKSKTDSSLTKLEEPKVRQEPEIPERRHKQWQSA
RKPGCGIQNSAAFAPQWHVPDVTPKADKESPPLSVPKWIDPKSVCETPSSSSLDDYMKCFKTSV
VKNEFPPACPSSTPYSQLARHQQHQQQGLSTPLQNLQISGSSSMSECISVNGRIYSILKQIGSG
GSSKVFQVLNEKKQINAIKYVNLEDADSQTIDSYRNEIAYLNKLQQHSDKIIRLYDYEITDRYI
YMVMECGNIDLNSWLKKKKSINPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIVDGMLKL
IDFGIANQMQPDTTSIVKDSQVGTVNYMAPEAIRDMSSSRENGKIKTKISPRSDVWSLGCILYY
MTYGKTPFQHIINQVSKLHAIIDPSHEIEFPEISEKDLRDVLKCCLVRNPKERISIPELLAHPY
VQIQPHPGSQMAKETTDEMKYMLGQLVCLNSPNSILKAAKTLYERYNCGESQAPSSSKTSDKKR
ERE

hide sequence

RefSeq Acc Id:

XP_006243526 ⟸ XM_006243464

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEAEELIGRNLTIDSIMNKVRDIKNKINEDLTDELNSIKVCVDPTETVNQIMMVENTPENWLNF
LLKLEKNSPPLNDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRLAELKAIQEPDDAHDYF
QMARENCKKFAFVHVSFAQFELSQGNLKKSEQLLHKAVETGAVPLQMLETAIRNLHLQKKQLLS
EEDKKSLSASTVLTAQESFSSSLGNLQSRKSSCDPKVQAAAARILYGENMPPKDAEVSHRNPLK
QTNKTKRSCPFGRVPVNLLNSPDYYVKTDGSAVPQFTKRKISGSEYRDSIMPGSKSSGNDSYEL
RGLKPIQAIHLKDSLVSNEKSSELMSDLVTLKSKTDSSLTKLEVSEPKVRQEPEIPERRHKQWQ
SARKPGCGIQNSAAFAPQWHVPDVTPKADKEQKCTTVEQLAFSVSKQSPPLSVPKWIDPKSVCE
TPSSSSLDDYMKCFKTSVVKNEFPPACPSSTPYSQLARHQQHQQQGLSTPLQNLQISGSSSMSE
CISVNGRIYSILKQIGSGGSSKVFQVLNEKKQINAIKYVNLEDADSQTIDSYRNEIAYLNKLQQ
HSDKIIRLYDYEITDRYIYMVMECGNIDLNSWLKKKKSINPWERKSYWKNMLEAVHTIHQHGIV
HSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSIVKDSQVGTVNYMAPEAIRDMSSSRENGKIK
TKISPRSDVWSLGCILYYMTYGKTPFQHIINQVSKLHAIIDPSHEIEFPEISEKDLRDVLKCCL
VRNPKERISIPELLAHPYVQIQPHPGSQMAKETTDEMKYMLGQLVCLNSPNSILKAAKTLYERY
NCGESQAPSSSKTSDKKRERE

hide sequence

RefSeq Acc Id:

XP_006243522 ⟸ XM_006243460

- Peptide Label:

isoform X1

- Sequence:

show sequence

MQMTGTSCSLEMEAEELIGRNLTIDSIMNKVRDIKNKINEDLTDELNSIKVCVDPTETVNQIMM
VENTPENWLNFLLKLEKNSPPLNDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRLAELKA
IQEPDDAHDYFQMARENCKKFAFVHVSFAQFELSQGNLKKSEQLLHKAVETGAVPLQMLETAIR
NLHLQKKQLLSEEDKKSLSASTVLTAQESFSSSLGNLQSRKSSCDPKVQAAAARILYGENMPPK
DAEVSHRNPLKQTNKTKRSCPFGRVPVNLLNSPDYYVKTDGSAVPQFTKRKISGSEYRDSIMPG
SKSSGNDSYELRGLKPIQAIHLKDSLVSNEKSSELMSDLVTLKSKTDSSLTKLEVSEPKVRQEP
EIPERRHKQWQSARKPGCGIQNSAAFAPQWHVPDVTPKADKEQKCTTVEQLAFSVSKQSPPLSV
PKWIDPKSVCETPSSSSLDDYMKCFKTSVVKNEFPPACPSSTPYSQLARHQQHQQQGLSTPLQN
LQISGSSSMSECISVNGRIYSILKQIGSGGSSKVFQVLNEKKQINAIKYVNLEDADSQTIDSYR
NEIAYLNKLQQHSDKIIRLYDYEITDRYIYMVMECGNIDLNSWLKKKKSINPWERKSYWKNMLE
AVHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSIVKDSQVGTVNYMAPEAIRD
MSSSRENGKIKTKISPRSDVWSLGCILYYMTYGKTPFQHIINQVSKLHAIIDPSHEIEFPEISE
KDLRDVLKCCLVRNPKERISIPELLAHPYVQIQPHPGSQMAKETTDEMKYMLGQLVCLNSPNSI
LKAAKTLYERYNCGESQAPSSSKTSDKKRERE

hide sequence

RefSeq Acc Id:

XP_006243525 ⟸ XM_006243463

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEAEELIGRNLTIDSIMNKVRDIKNKINEDLTDELNSIKVCVDPTETVNQIMMVENTPENWLNF
LLKLEKNSPPLNDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRLAELKAIQEPDDAHDYF
QMARENCKKFAFVHVSFAQFELSQGNLKKSEQLLHKAVETGAVPLQMLETAIRNLHLQKKQLLS
EEDKKSLSASTVLTAQESFSSSLGNLQSRKSSCDPKVQAAAARILYGENMPPKDAEVSHRNPLK
QTNKTKRSCPFGRVPVNLLNSPDYYVKTDGSAVPQFTKRKISGSEYRDSIMPGSKSSGNDSYEL
RGLKPIQAIHLKDSLVSNEKSSELMSDLVTLKSKTDSSLTKLEVSEPKVRQEPEIPERRHKQWQ
SARKPGCGIQNSAAFAPQWHVPDVTPKADKEQKCTTVEQLAFSVSKQSPPLSVPKWIDPKSVCE
TPSSSSLDDYMKCFKTSVVKNEFPPACPSSTPYSQLARHQQHQQQGLSTPLQNLQISGSSSMSE
CISVNGRIYSILKQIGSGGSSKVFQVLNEKKQINAIKYVNLEDADSQTIDSYRNEIAYLNKLQQ
HSDKIIRLYDYEITDRYIYMVMECGNIDLNSWLKKKKSINPWERKSYWKNMLEAVHTIHQHGIV
HSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSIVKDSQVGTVNYMAPEAIRDMSSSRENGKIK
TKISPRSDVWSLGCILYYMTYGKTPFQHIINQVSKLHAIIDPSHEIEFPEISEKDLRDVLKCCL
VRNPKERISIPELLAHPYVQIQPHPGSQMAKETTDEMKYMLGQLVCLNSPNSILKAAKTLYERY
NCGESQAPSSSKTSDKKRERE

hide sequence

RefSeq Acc Id:

XP_006243527 ⟸ XM_006243465

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEAEELIGRNLTIDSIMNKVRDIKNKINEDLTDELNSIKVCVDPTETVNQIMMVENTPENWLNF
LLKLEKNSPPLNDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRLAELKAIQEPDDAHDYF
QMARENCKKFAFVHVSFAQFELSQGNLKKSEQLLHKAVETGAVPLQMLETAIRNLHLQKKQLLS
EEDKKSLSASTVLTAQESFSSSLGNLQSRKSSCDPKVQAAAARILYGENMPPKDAEVSHRNPLK
QTNKTKRSCPFGRVPVNLLNSPDYYVKTDGSAVPQFTKRKISGSEYRDSIMPGSKSSGNDSYEL
RGLKPIQAIHLKDSLVSNEKSSELMSDLVTLKSKTDSSLTKLEVSEPKVRQEPEIPERRHKQWQ
SARKPGCGIQNSAAFAPQWHVPDVTPKADKEQKCTTVEQLAFSVSKQSPPLSVPKWIDPKSVCE
TPSSSSLDDYMKCFKTSVVKNEFPPACPSSTPYSQLARHQQHQQQGLSTPLQNLQISGSSSMSE
CISVNGRIYSILKQIGSGGSSKVFQVLNEKKQINAIKYVNLEDADSQTIDSYRNEIAYLNKLQQ
HSDKIIRLYDYEITDRYIYMVMECGNIDLNSWLKKKKSINPWERKSYWKNMLEAVHTIHQHGIV
HSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSIVKDSQVGTVNYMAPEAIRDMSSSRENGKIK
TKISPRSDVWSLGCILYYMTYGKTPFQHIINQVSKLHAIIDPSHEIEFPEISEKDLRDVLKCCL
VRNPKERISIPELLAHPYVQIQPHPGSQMAKETTDEMKYMLGQLVCLNSPNSILKAAKTLYERY
NCGESQAPSSSKTSDKKRERE

hide sequence

RefSeq Acc Id:

XP_006243524 ⟸ XM_006243462

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEAEELIGRNLTIDSIMNKVRDIKNKINEDLTDELNSIKVCVDPTETVNQIMMVENTPENWLNF
LLKLEKNSPPLNDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRLAELKAIQEPDDAHDYF
QMARENCKKFAFVHVSFAQFELSQGNLKKSEQLLHKAVETGAVPLQMLETAIRNLHLQKKQLLS
EEDKKSLSASTVLTAQESFSSSLGNLQSRKSSCDPKVQAAAARILYGENMPPKDAEVSHRNPLK
QTNKTKRSCPFGRVPVNLLNSPDYYVKTDGSAVPQFTKRKISGSEYRDSIMPGSKSSGNDSYEL
RGLKPIQAIHLKDSLVSNEKSSELMSDLVTLKSKTDSSLTKLEVSEPKVRQEPEIPERRHKQWQ
SARKPGCGIQNSAAFAPQWHVPDVTPKADKEQKCTTVEQLAFSVSKQSPPLSVPKWIDPKSVCE
TPSSSSLDDYMKCFKTSVVKNEFPPACPSSTPYSQLARHQQHQQQGLSTPLQNLQISGSSSMSE
CISVNGRIYSILKQIGSGGSSKVFQVLNEKKQINAIKYVNLEDADSQTIDSYRNEIAYLNKLQQ
HSDKIIRLYDYEITDRYIYMVMECGNIDLNSWLKKKKSINPWERKSYWKNMLEAVHTIHQHGIV
HSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSIVKDSQVGTVNYMAPEAIRDMSSSRENGKIK
TKISPRSDVWSLGCILYYMTYGKTPFQHIINQVSKLHAIIDPSHEIEFPEISEKDLRDVLKCCL
VRNPKERISIPELLAHPYVQIQPHPGSQMAKETTDEMKYMLGQLVCLNSPNSILKAAKTLYERY
NCGESQAPSSSKTSDKKRERE

hide sequence

RefSeq Acc Id:	XP_006243523 ⟸ XM_006243461
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K2S5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQMTGTSCSLEMEAEELIGRNLTIDSIMNKVRDIKNKINEDLTDELNSIKVCVDPTETVNQIMM VENTPENWLNFLLKLEKNSPPLNDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRLAELKA IQEPDDAHDYFQMARENCKKFAFVHVSFAQFELSQGNLKKSEQLLHKAVETGAVPLQMLETAIR NLHLQKKQLLSEEDKKSLSASTVLTAQESFSSSLGNLQSRKSSCDPKVQAAAARILYGENMPPK DAEVSHRNPLKQTNKTKRSCPFGRVPVNLLNSPDYYVKTDGSAVPQFTKRKISGSEYRDSIMPG SKSSGNDSYELRGLKPIQAIHLKDSLVSNEKSSELMSDLVTLKSKTDSSLTKLEVSEPKVRQEP EIPERRHKQWQSARKPGCGIQNSAAFAPQWHVPDVTPKADKEKCTTVEQLAFSVSKQSPPLSVP KWIDPKSVCETPSSSSLDDYMKCFKTSVVKNEFPPACPSSTPYSQLARHQQHQQQGLSTPLQNL QISGSSSMSECISVNGRIYSILKQIGSGGSSKVFQVLNEKKQINAIKYVNLEDADSQTIDSYRN EIAYLNKLQQHSDKIIRLYDYEITDRYIYMVMECGNIDLNSWLKKKKSINPWERKSYWKNMLEA VHTIHQHGIVHSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSIVKDSQVGTVNYMAPEAIRDM SSSRENGKIKTKISPRSDVWSLGCILYYMTYGKTPFQHIINQVSKLHAIIDPSHEIEFPEISEK DLRDVLKCCLVRNPKERISIPELLAHPYVQIQPHPGSQMAKETTDEMKYMLGQLVCLNSPNSIL KAAKTLYERYNCGESQAPSSSKTSDKKRERE hide sequence

RefSeq Acc Id:

XP_006243528 ⟸ XM_006243466

- Peptide Label:

isoform X3

- Sequence:

show sequence

MEAEELIGRNLTIDSIMNKVRDIKNKINEDLTDELNSIKVCVDPTETVNQIMMVENTPENWLNF
LLKLEKNSPPLNDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRLAELKAIQEPDDAHDYF
QMARENCKKFAFVHVSFAQFELSQGNLKKSEQLLHKAVETGAVPLQMLETAIRNLHLQKKQLLS
EEDKKSLSASTVLTAQESFSSSLGNLQSRKSSCDPKVQAAAARILYGENMPPKDAEVSHRNPLK
QTNKTKRSCPFGRVPVNLLNSPDYYVKTDGSAVPQFTKRKISGSEYRDSIMPGSKSSGNDSYEL
RGLKPIQAIHLKDSLVSNEKSSELMSDLVTLKSKTDSSLTKLEVSEPKVRQEPEIPERRHKQWQ
SARKPGCGIQNSAAFAPQWHVPDVTPKADKEQKCTTVEQLAFSVSKQSPPLSVPKWIDPKSVCE
TPSSSSLDDYMKCFKTSVVKNEFPPACPSSTPYSQLARHQQHQQQGLSTPLQNLQISGSSSMSE
CISVNGRIYSILKQIGSGGSSKVFQVLNEKKQINAIKYVNLEDADSQTIDSYRNEIAYLNKLQQ
HSDKIIRLYDYEITDRYIYMVMECGNIDLNSWLKKKKSINPWERKSYWKNMLEAVHTIHQHGIV
HSDLKPANFLIVDGMLKLIDFGIANQMQPDTTSIVKDSQVGTVNYMAPEAIRDMSSSRENGKIK
TKISPRSDVWSLGCILYYMTYGKTPFQHIINQVSKLHAIIDPSHEIEFPEISEKDLRDVLKCCL
VRNPKERISIPELLAHPYVQIQPHPGSQMAKETTDEMKYMLGQLVCLNSPNSILKAAKTLYERY
NCGESQAPSSSKTSDKKRERE

hide sequence

RefSeq Acc Id:

ENSRNOP00000042156 ⟸ ENSRNOT00000051612

RefSeq Acc Id:

ENSRNOP00000072355 ⟸ ENSRNOT00000083151

RefSeq Acc Id:	XP_038937455 ⟸ XM_039081527
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038937456 ⟸ XM_039081528
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038937454 ⟸ XM_039081526
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038937453 ⟸ XM_039081525
- Peptide Label:	isoform X4

RefSeq Acc Id:

ENSRNOP00000079704 ⟸ ENSRNOT00000114297

Protein Domains

Protein kinase

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696154

Promoter ID:

EPDNEW_R6679

Type:

multiple initiation site

Name:

Ttk_1

Description:

Ttk protein kinase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	91,368,437 - 91,368,497	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (2019)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/EurMcwi (MCW)

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CSV

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

ACI/N (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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CSV

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN-Lx/CubMcwi (2019)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2019)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/NHsdMcwi (2020)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (2020)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BN/SsN (MCW)

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CSV

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BUF/N (2020)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH2/CubMcwi (2020)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

BXH3/CubMcwi (2020)

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CSV

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

Buf/N (MCW)

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CSV

TAB

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

DA/OlaHsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/DuCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

F344/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FXLE16/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

FXLE18/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/FarMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

HXB10/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB2/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB20/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB31/IpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

HXB4/IpcvMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEXF10A/StmMcwi (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF11/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1A/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF1C/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF2B/Stm (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF3/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LEXF4/Stm (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrcAek (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Kwitek
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

M520/NRrrcMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MWF/Hsd (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

PVG/Seac (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Japan
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/OlalpcvMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/A3NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Envigo
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	MCW
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/RijCrl (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (2019)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	Charles River
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (2020)

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Sequenced By:	MCW
Platform:	GSPMC-Illumina-NovaSeq6000
Secondary Analysis:	BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder:	NIH
Description:	Dr. Mindy Dwinell - Hybrid rat diversity program

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305558	AgrOrtholog
Ensembl Genes	ENSRNOG00000029055	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000042156	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000072355	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000051612	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000083151	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	Dual_sp_prot_kinse_Ttk	UniProtKB/TrEMBL
	Kinase-like_dom	UniProtKB/TrEMBL
	Prot_kinase_cat_dom	UniProtKB/TrEMBL
	Ser/Thr_prot_kinase_AS	UniProtKB/TrEMBL
	TPR-like_helical	UniProtKB/TrEMBL
KEGG Report	rno:315852	UniProtKB/TrEMBL
NCBI Gene	315852	ENTREZGENE
PANTHER	PTHR22974:SF21	UniProtKB/TrEMBL
Pfam	Pkinase	UniProtKB/TrEMBL
PhenoGen	Ttk	PhenoGen
PROSITE	PROTEIN_KINASE_DOM	UniProtKB/TrEMBL
	PROTEIN_KINASE_ST	UniProtKB/TrEMBL
SMART	S_TKc	UniProtKB/TrEMBL
Superfamily-SCOP	Kinase_like	UniProtKB/TrEMBL
UniProt	A0A0G2K2S5	ENTREZGENE, UniProtKB/TrEMBL
	D4A4S7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Ttk	Ttk protein kinase	Ttk_predicted	Ttk protein kinase (predicted)	'predicted' is removed	2292626	APPROVED
2005-01-12	Ttk_predicted	Ttk protein kinase (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)