Selp (selectin P) - Rat Genome Database

Name: Selp
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Selp (selectin P) Ictidomys tridecemlineatus

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Symbol:

Selp

Name:

selectin P

RGD ID:

12721430

Description:

ENCODES a protein that exhibits calcium ion binding (inferred); calcium-dependent protein binding (inferred); carbohydrate binding (inferred); INVOLVED IN cell-cell adhesion (ortholog); heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); inflammatory response (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); acute necrotizing pancreatitis (ortholog); allergic disease (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular space (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC101970607; P-selectin; selectin P, transcript variant X1; selectin P, transcript variant X2; selectin P, transcript variant X3; selectin P, transcript variant X4

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SELP (selectin P)	NCBI	Ortholog
Mus musculus (house mouse):	Selp (selectin, platelet)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Selp (selectin P)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Selp (selectin P)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SELP (selectin P)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SELP (selectin P)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SELP (selectin P)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SELP (selectin P)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Selp (selectin P)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	99,229,898 - 99,265,758 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	17,076,536 - 17,107,963 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	17,076,660 - 17,112,501 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

1q24 Deletion Syndrome (ISO)

acute necrotizing pancreatitis (ISO)

allergic disease (ISO)

Alzheimer's disease (ISO)

anti-basement membrane glomerulonephritis (ISO)

atherosclerosis (ISO)

atopic dermatitis (ISO)

brain small vessel disease (ISO)

Bronchial Hyperreactivity (ISO)

chronic obstructive pulmonary disease (ISO)

colitis (ISO)

congestive heart failure (ISO)

coronary artery disease (ISO)

Coronary Disease (ISO)

Cytomegalovirus Infections (ISO)

depressive disorder (ISO)

Diabetic Nephropathies (ISO)

Experimental Liver Cirrhosis (ISO)

gastrointestinal stromal tumor (ISO)

human immunodeficiency virus infectious disease (ISO)

hypertension (ISO)

Hypothermia (ISO)

Immediate Hypersensitivity (ISO)

Inflammation (ISO)

intermediate coronary syndrome (ISO)

ischemia (ISO)

juvenile rheumatoid arthritis (ISO)

Kawasaki disease (ISO)

Lupus Vasculitis, Central Nervous System (ISO)

Metabolic Syndrome (ISO)

myocardial infarction (ISO)

Myocardial Ischemia (ISO)

Myocardial Reperfusion Injury (ISO)

Neointima (ISO)

Neurobehavioral Manifestations (ISO)

obesity (ISO)

parathyroid carcinoma (ISO)

pleurisy (ISO)

Primary Graft Dysfunction (ISO)

Reperfusion Injury (ISO)

Sepsis (ISO)

sickle cell anemia (ISO)

Sjogren's syndrome (ISO)

Stroke (ISO)

thrombosis (ISO)

type 2 diabetes mellitus (ISO)

ulcerative colitis (ISO)

Venous Thromboembolism (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (IEA)

cell adhesion (IEA)

cell-cell adhesion (IEA,ISO)

heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (IEA,ISO)

inflammatory response (IEA,ISO)

leukocyte cell-cell adhesion (IEA,ISO)

leukocyte migration (IEA,ISO)

leukocyte tethering or rolling (IEA,ISO)

positive regulation of cell adhesion (ISO)

positive regulation of leukocyte migration (IEA,ISO)

positive regulation of leukocyte tethering or rolling (IEA)

positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (IEA)

positive regulation of platelet activation (IEA)

regulation of cellular extravasation (ISO)

regulation of integrin activation (IEA)

response to lipopolysaccharide (ISO)

response to organic cyclic compound (ISO)

Cellular Component

external side of plasma membrane (IEA,ISO)

extracellular space (IEA,ISO)

membrane (IEA)

plasma membrane (IEA)

platelet alpha granule membrane (IEA)

Molecular Function

calcium ion binding (IEA)

calcium-dependent protein binding (IEA)

carbohydrate binding (IEA)

fucose binding (IEA)

heparin binding (IEA)

integrin binding (IEA)

lipopolysaccharide binding (IEA)

metal ion binding (IEA)

oligosaccharide binding (IEA)

protein binding (ISO)

sialic acid binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

interleukin-4 signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Selp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	99,229,898 - 99,265,758 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	17,076,536 - 17,107,963 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	17,076,660 - 17,112,501 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SELP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	169,588,849 - 169,630,124 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	169,588,849 - 169,630,193 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	169,558,087 - 169,599,362 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	167,824,711 - 167,866,001 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	166,289,747 - 166,331,065	NCBI
Celera	1	142,667,866 - 142,709,161 (-)	NCBI		Celera
Cytogenetic Map	1	q24.2	NCBI
HuRef	1	140,780,771 - 140,822,069 (-)	NCBI		HuRef
CHM1_1	1	170,980,248 - 171,021,531 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	168,944,736 - 168,986,000 (-)	NCBI		T2T-CHM13v2.0

Selp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	163,942,833 - 163,977,595 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	163,942,833 - 163,977,595 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	164,115,264 - 164,150,026 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	164,115,264 - 164,150,026 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	166,045,509 - 166,079,876 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	165,952,053 - 165,986,420 (+)	NCBI		MGSCv36	mm8
MGSCv36	1	165,306,067 - 165,340,774 (+)	NCBI		MGSCv36	mm8
Celera	1	166,568,384 - 166,587,846 (+)	NCBI		Celera
Cytogenetic Map	1	H2.2	NCBI
cM Map	1	71.42	NCBI

Selp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	79,009,379 - 79,044,994 (+)	NCBI		GRCr8
mRatBN7.2	13	76,476,229 - 76,511,846 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	76,476,295 - 76,511,845 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	79,094,917 - 79,130,437 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	80,398,945 - 80,434,427 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	77,653,541 - 77,689,020 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	82,428,914 - 82,464,629 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	82,429,063 - 82,464,628 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	87,308,435 - 87,344,164 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	79,886,614 - 79,922,180 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	13	79,910,278 - 79,936,368 (+)	NCBI
Celera	13	76,209,805 - 76,244,685 (+)	NCBI		Celera
RH 3.4 Map	13	482.6	RGD
Cytogenetic Map	13	q23	NCBI

Selp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	7,652,437 - 7,693,994 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955462	7,658,371 - 7,692,870 (+)	NCBI	ChiLan1.0	ChiLan1.0

SELP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	80,139,053 - 80,179,968 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	79,807,454 - 79,848,377 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	145,071,094 - 145,112,851 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	148,793,677 - 148,834,701 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	148,793,677 - 148,834,701 (-)	Ensembl	panpan1.1		panPan2

SELP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	28,956,428 - 28,997,266 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	28,958,486 - 28,996,313 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	28,490,155 - 28,527,988 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	28,758,392 - 28,799,283 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	28,760,327 - 28,798,333 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	28,608,516 - 28,646,330 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	28,644,251 - 28,682,064 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	28,881,019 - 28,918,852 (+)	NCBI		UU_Cfam_GSD_1.0

SELP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	81,365,740 - 81,399,955 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	81,376,804 - 81,401,240 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	89,001,468 - 89,025,903 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SELP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	59,420,910 - 59,465,140 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	59,433,333 - 59,462,598 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	61,082,227 - 61,140,767 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Selp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	7,511,646 - 7,537,924 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624826	7,510,039 - 7,544,332 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021722674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021722677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010004404	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000008939 ⟹ ENSSTOP00000008012

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936481	17,076,536 - 17,107,963 (+)	Ensembl

Ensembl Acc Id:

ENSSTOT00000038926 ⟹ ENSSTOP00000030185

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936481	17,076,536 - 17,107,963 (+)	Ensembl

RefSeq Acc Id:

XM_021722674 ⟹ XP_021578349

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	99,229,900 - 99,265,758 (+)	NCBI
SpeTri2.0	NW_004936481	17,076,660 - 17,112,501 (+)	NCBI

Sequence:

show sequence

GGGGATGCGGGTCTGTTCCTGCGTTGCTCAGCCTGGGATGTCCAGGAGTGAGTCACACTTGCCC
CTGCCTCCAGACATCTCCATGGAAGGGGTGACCCCTGCCACTTTGGCGACTGCTAATTTACAAG
CTGCCGCACTGCTCCTGCATTATCATCGTTCTGACTTCATGAGAAAGTCTATGGTAAATTTCTG
GAAATCGAATAGGAAGTTGTATTTCTAAGCAGTCTGACACTGAGGGAAGGCAGCAAGACTATAA
GAAGTGTGGGCTGGACAGGAGGCAGAAAGCCAGCAGAGCCGCAGAGGAGATGGACAGCTGCCTA
AAAGCCATCTGGATCCTGAGATCTCAGAGAGTGGTCTTTGGAGCTGCCCAACTCCTCTGGTTCG
GTGCTTTGATCTCTGAGCTAACAAACCAGAAGGAAGTGACAGCGTGGACCTATAATTACAGTAT
AAAAGCATACCCGTGGAATTACTCCCGGGCATTCTGCCAGAAACACTTCACAGATTTAGTGGCT
ATCCAGAATAAAAATGAAATTGCTCATCTCAATGAAGTCATACCCTACTACAGCTCTTACTACT
GGATTGGGATCAGAAAGATCAATAACAAGTGGACCTGGGTGGGAACCAAGAAGGCTCTCACGGA
GGAGGCCGAGAACTGGGCCGACAACGAGCCCAACAACAAGAGGAACAACCAGGACTGCGTGGAG
ATATATATCAAGAGTCTGTCGGCCCCTGGCAAATGGAATGATGAGCCCTGCGGGAAAAGAAAGC
GGGCCCTGTGCTACACAGCCTCCTGCCACGACATGTCCTGCAGCAAACAGGGAGACTGCATTGA
GACCATCGGGAACTACACCTGCTCCTGCCACCCTGGGTTCCATGGGCCTGAGTGTGAATATGTT
AGAGAGTGTGGAGAATTCGGCCTCCCTCAACACGTGTTCATGAACTGCAGCCACCCTCTGGGAC
ACTTCTCTTTCAACTCACAGTGCACGCTCCACTGTGCTGAAGGGTACGAACTGAATGGACCCAG
CCAGCTGAAGTGTTTGGCTTCTGGAATCTGGACACAGAAGCCCCCACAGTGTGTAGCTGTGCAG
TGTCAGCACCTGGAAGCCCCTGACAACGGAACCATGGACTGCGTGCATCCACTTGCTGCCTTTG
CCTATGGCTCCCGCTGTTCATTTGAGTGCCAACCTGGTTATCGAATAAGGGGCCTGGACACACT
CCACTGCATTGGCCCTGGCCAGTGGACTGCGCCCTTACCAACCTGTGAAGCCCTTGCATGTGAG
CCACTGGAGAGTCCTGACCATGGGAGCATGGAGTGCTCCCCATCCTCAAGAGCCTTTCAGTACA
ACTCCAGATGTAGCTTCCATTGCACGGAGGGTTTCTTGCTGAGAGGAGCTGATGTGGTTTGGTG
TGCTGACTTGGGACAGTGGACAGCACCAGCCCCCATGTGTCAAGCTGTGCAATGCCAAGACCTT
CCAGCTCCCCACAGGGCCCAGGTGAACTGCTCCCACCCCTCCGGCAGCTTCAGATACCAGTCAG
TCTGCAGCTTCACCTGTGAAGAAGGCTCGCTCCTGGTGGGAGAAGGCGAGCTGCGGTGCTTGGC
TACTGGGCACTGGAGTGCTGCTCCCCCAGAATGCCAAGCCGTTACTTGCTCACCTCTGCTGAGC
CCTCAGAATGGAACAATGACCTGTACCCGACCTTTTGGAGAGTCCAGTTATAAAGCCACCTGCC
AGTTCATCTGTGAGGAGGGATTTTCTTTATCTGGACCTGAAAGGTTGGATTGTACTCCATCTGG
ACAGTGGACAGGCTCCCCGCCAAGGTGTGAAGGTATAGCGTCAGTTTCTACCTCCAAGGTTCAA
TGCCCAGCCCTTGTTGCTTCTGGGCAGGGAACAATGACCTGCAGACATACTGGGGAAAACTTTG
GCTTGGACACCACTTGCTACTTTGGATGCAAAGCTGGATTCACACTCACAGGAGACAGCACCCT
CAAGTGCAATCCTTCAGGACAATGGACAGCAGTAACCCCAGCTTGCAGAGCCATCAAATGCCCA
GAACTGCATATCAACAAGCCAACAGTGATGAACTGTTCCAACCCCTGGGGGAATTTCAGCTATG
GGTCAACCTGCACCTTCCATTGTCCAGAGGGTCATTTACTTAATGGCTCTGCCAGAGCAGCATG
CCAAGAGAATGGACACTGGTCAGCTACCACACCAACGTGCCAAGAGGGGCCATTGACTGTCCAG
GAGGCCCTGACTTACTTTGGTGGAGCTGTGGCTTCTACAATAGGTCTGGTCATGGGTGGGACAC
TCTTGGCTCTGCTGAGAAAGCGTCTCAGGAAGAAAGATGACGGGAAATGCCCCCTGAACCCTCA
AAGCCACCTTGGAACATACGGAGTTTTTACAAATGCTGCATTTGACCCGAACCCTTAAGAGGCC
TATCTCCCAACCTCTCAGGATCCTAGTTGGTGAACATGGAGCTTTCTGCTAAACTTGACTTAAA
CTGTAGCACAGTTGTGGCAGTTTTCTGTTACCCCCTGGATAAGGGCATGGACTCTCCTTTAGAC
CAACTCTGGATCAGAGCAGAGGACTGTGCCATGTTCTGACCTCCCCATCACCCCCTTCCTGCTC
CACCTCTGCTCTTCCTCCAACACAAGCTGCTGACGCCAAGAGCAAATGTTTGTGCTGTGGTCTG
TGGACTTGAACATGGCTGTCACTGGAAATACCAGCTAATCAAAGAGACCAGAGTGTTTGACTCA
CCAGGAGACCAGACTGGAGAAATGAAAATACCCCTTTATTTGGGGGTTAAGGAAGGCTTCTCTG
CAGTGTTGGAAGCCAGGCACATCTCTGACTTCAGGAAACCCCAGCATGATCTCCCAGAACTCCA
GTGGTTGCTGTCAATGAGGAGCCTTAGACCTCTGCTGCTGAGGTTTCCAGAGAAACCTGGGATG
GTACCCAAGGCTATAGAAGACCAAGAATCAGAACAGGAAGCTCCATCTCACTATAGATCTTATC
AAAGGACCCAAAGACCAATTAAATGGATTTGCC

hide sequence

RefSeq Acc Id:

XM_021722675 ⟹ XP_021578350

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	99,229,900 - 99,265,758 (+)	NCBI
SpeTri2.0	NW_004936481	17,076,660 - 17,112,501 (+)	NCBI

Sequence:

show sequence

GGGGATGCGGGTCTGTTCCTGCGTTGCTCAGCCTGGGATGTCCAGGAGTGAGTCACACTTGCCC
CTGCCTCCAGACATCTCCATGGAAGGGGTGACCCCTGCCACTTTGGCGACTGCTAATTTACAAG
CTGCCGCACTGCTCCTGCATTATCATCGTTCTGACTTCATGAGAAAGTCTATGGTAAATTTCTG
GAAATCGAATAGGAAGTTGTATTTCTAAGCAGTCTGACACTGAGGGAAGGCAGCAAGACTATAA
GAAGTGTGGGCTGGACAGGAGGCAGAAAGCCAGCAGAGCCGCAGAGGAGATGGACAGCTGCCTA
AAAGCCATCTGGATCCTGAGATCTCAGAGAGTGGTCTTTGGAGCTGCCCAACTCCTCTGGTTCG
GTGCTTTGATCTCTGAGCTAACAAACCAGAAGGAAGTGACAGCGTGGACCTATAATTACAGTAT
AAAAGCATACCCGTGGAATTACTCCCGGGCATTCTGCCAGAAACACTTCACAGATTTAGTGGCT
ATCCAGAATAAAAATGAAATTGCTCATCTCAATGAAGTCATACCCTACTACAGCTCTTACTACT
GGATTGGGATCAGAAAGATCAATAACAAGTGGACCTGGGTGGGAACCAAGAAGGCTCTCACGGA
GGAGGCCGAGAACTGGGCCGACAACGAGCCCAACAACAAGAGGAACAACCAGGACTGCGTGGAG
ATATATATCAAGAGTCTGTCGGCCCCTGGCAAATGGAATGATGAGCCCTGCGGGAAAAGAAAGC
GGGCCCTGTGCTACACAGCCTCCTGCCACGACATGTCCTGCAGCAAACAGGGAGACTGCATTGA
GACCATCGGGAACTACACCTGCTCCTGCCACCCTGGGTTCCATGGGCCTGAGTGTGAATATGCT
GTGCAGTGTCAGCACCTGGAAGCCCCTGACAACGGAACCATGGACTGCGTGCATCCACTTGCTG
CCTTTGCCTATGGCTCCCGCTGTTCATTTGAGTGCCAACCTGGTTATCGAATAAGGGGCCTGGA
CACACTCCACTGCATTGGCCCTGGCCAGTGGACTGCGCCCTTACCAACCTGTGAAGCCCTTGCA
TGTGAGCCACTGGAGAGTCCTGACCATGGGAGCATGGAGTGCTCCCCATCCTCAAGAGCCTTTC
AGTACAACTCCAGATGTAGCTTCCATTGCACGGAGGGTTTCTTGCTGAGAGGAGCTGATGTGGT
TTGGTGTGCTGACTTGGGACAGTGGACAGCACCAGCCCCCATGTGTCAAGCTGTGCAATGCCAA
GACCTTCCAGCTCCCCACAGGGCCCAGGTGAACTGCTCCCACCCCTCCGGCAGCTTCAGATACC
AGTCAGTCTGCAGCTTCACCTGTGAAGAAGGCTCGCTCCTGGTGGGAGAAGGCGAGCTGCGGTG
CTTGGCTACTGGGCACTGGAGTGCTGCTCCCCCAGAATGCCAAGCCGTTACTTGCTCACCTCTG
CTGAGCCCTCAGAATGGAACAATGACCTGTACCCGACCTTTTGGAGAGTCCAGTTATAAAGCCA
CCTGCCAGTTCATCTGTGAGGAGGGATTTTCTTTATCTGGACCTGAAAGGTTGGATTGTACTCC
ATCTGGACAGTGGACAGGCTCCCCGCCAAGGTGTGAAGGTATAGCGTCAGTTTCTACCTCCAAG
GTTCAATGCCCAGCCCTTGTTGCTTCTGGGCAGGGAACAATGACCTGCAGACATACTGGGGAAA
ACTTTGGCTTGGACACCACTTGCTACTTTGGATGCAAAGCTGGATTCACACTCACAGGAGACAG
CACCCTCAAGTGCAATCCTTCAGGACAATGGACAGCAGTAACCCCAGCTTGCAGAGCCATCAAA
TGCCCAGAACTGCATATCAACAAGCCAACAGTGATGAACTGTTCCAACCCCTGGGGGAATTTCA
GCTATGGGTCAACCTGCACCTTCCATTGTCCAGAGGGTCATTTACTTAATGGCTCTGCCAGAGC
AGCATGCCAAGAGAATGGACACTGGTCAGCTACCACACCAACGTGCCAAGAGGGGCCATTGACT
GTCCAGGAGGCCCTGACTTACTTTGGTGGAGCTGTGGCTTCTACAATAGGTCTGGTCATGGGTG
GGACACTCTTGGCTCTGCTGAGAAAGCGTCTCAGGAAGAAAGATGACGGGAAATGCCCCCTGAA
CCCTCAAAGCCACCTTGGAACATACGGAGTTTTTACAAATGCTGCATTTGACCCGAACCCTTAA
GAGGCCTATCTCCCAACCTCTCAGGATCCTAGTTGGTGAACATGGAGCTTTCTGCTAAACTTGA
CTTAAACTGTAGCACAGTTGTGGCAGTTTTCTGTTACCCCCTGGATAAGGGCATGGACTCTCCT
TTAGACCAACTCTGGATCAGAGCAGAGGACTGTGCCATGTTCTGACCTCCCCATCACCCCCTTC
CTGCTCCACCTCTGCTCTTCCTCCAACACAAGCTGCTGACGCCAAGAGCAAATGTTTGTGCTGT
GGTCTGTGGACTTGAACATGGCTGTCACTGGAAATACCAGCTAATCAAAGAGACCAGAGTGTTT
GACTCACCAGGAGACCAGACTGGAGAAATGAAAATACCCCTTTATTTGGGGGTTAAGGAAGGCT
TCTCTGCAGTGTTGGAAGCCAGGCACATCTCTGACTTCAGGAAACCCCAGCATGATCTCCCAGA
ACTCCAGTGGTTGCTGTCAATGAGGAGCCTTAGACCTCTGCTGCTGAGGTTTCCAGAGAAACCT
GGGATGGTACCCAAGGCTATAGAAGACCAAGAATCAGAACAGGAAGCTCCATCTCACTATAGAT
CTTATCAAAGGACCCAAAGACCAATTAAATGGATTTGCC

hide sequence

RefSeq Acc Id:

XM_021722677 ⟹ XP_021578352

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024409344	99,229,898 - 99,265,758 (+)	NCBI
SpeTri2.0	NW_004936481	17,076,660 - 17,112,501 (+)	NCBI

Sequence:

show sequence

GGGGATGCGGGTCTGTTCCTGCGTTGCTCAGCCTGGGATGTCCAGGAGTGAGTCACACTTGCCC
CTGCCTCCAGACATCTCCATGGAAGGGGTGACCCCTGCCACTTTGGCGACTGCTAATTTACAAG
CTGCCGCACTGCTCCTGCATTATCATCGTTCTGACTTCATGAGAAAGTCTATGGTAAATTTCTG
GAAATCGAATAGGAAGTTGTATTTCTAAGCAGTCTGACACTGAGGGAAGGCAGCAAGACTATAA
GAAGTGTGGGCTGGACAGGAGGCAGAAAGCCAGCAGAGCCGCAGAGGAGATGGACAGCTGCCTA
AAAGCCATCTGGATCCTGAGATCTCAGAGAGTGGTCTTTGGAGCTGCCCAACTCCTCTGGTTCG
GTGCTTTGATCTCTGAGCTAACAAACCAGAAGGAAGTGACAGCGTGGACCTATAATTACAGTAT
AAAAGCATACCCGTGGAATTACTCCCGGGCATTCTGCCAGAAACACTTCACAGATTTAGTGGCT
ATCCAGAATAAAAATGAAATTGCTCATCTCAATGAAGTCATACCCTACTACAGCTCTTACTACT
GGATTGGGATCAGAAAGATCAATAACAAGTGGACCTGGGTGGGAACCAAGAAGGCTCTCACGGA
GGAGGCCGAGAACTGGGCCGACAACGAGCCCAACAACAAGAGGAACAACCAGGACTGCGTGGAG
ATATATATCAAGAGTCTGTCGGCCCCTGGCAAATGGAATGATGAGCCCTGCGGGAAAAGAAAGC
GGGCCCTGTGCTACACAGCCTCCTGCCACGACATGTCCTGCAGCAAACAGGGAGACTGCATTGA
GACCATCGGGAACTACACCTGCTCCTGCCACCCTGGGTTCCATGGGCCTGAGTGTGAATATGTT
AGAGAGTGTGGAGAATTCGGCCTCCCTCAACACGTGTTCATGAACTGCAGCCACCCTCTGGGAC
ACTTCTCTTTCAACTCACAGTGCACGCTCCACTGTGCTGAAGGGTACGAACTGAATGGACCCAG
CCAGCTGAAGTGTTTGGCTTCTGGAATCTGGACACAGAAGCCCCCACAGTGTGTAGCTGTGCAG
TGTCAGCACCTGGAAGCCCCTGACAACGGAACCATGGACTGCGTGCATCCACTTGCTGCCTTTG
CCTATGGCTCCCGCTGTTCATTTGAGTGCCAACCTGGTTATCGAATAAGGGGCCTGGACACACT
CCACTGCATTGGCCCTGGCCAGTGGACTGCGCCCTTACCAACCTGTGAAGCCCTTGCATGTGAG
CCACTGGAGAGTCCTGACCATGGGAGCATGGAGTGCTCCCCATCCTCAAGAGCCTTTCAGTACA
ACTCCAGATGTAGCTTCCATTGCACGGAGGGTTTCTTGCTGAGAGGAGCTGATGTGGTTTGGTG
TGCTGACTTGGGACAGTGGACAGCACCAGCCCCCATGTGTCAAGCTGTGCAATGCCAAGACCTT
CCAGCTCCCCACAGGGCCCAGGTGAACTGCTCCCACCCCTCCGGCAGCTTCAGATACCAGTCAG
TCTGCAGCTTCACCTGTGAAGAAGGCTCGCTCCTGGTGGGAGAAGGCGAGCTGCGGTGCTTGGC
TACTGGGCACTGGAGTGCTGCTCCCCCAGAATGCCAAGCCGTTACTTGCTCACCTCTGCTGAGC
CCTCAGAATGGAACAATGACCTGTACCCGACCTTTTGGAGAGTCCAGTTATAAAGCCACCTGCC
AGTTCATCTGTGAGGAGGGATTTTCTTTATCTGGACCTGAAAGGTTGGATTGTACTCCATCTGG
ACAGTGGACAGGCTCCCCGCCAAGGTGTGAAGCCATCAAATGCCCAGAACTGCATATCAACAAG
CCAACAGTGATGAACTGTTCCAACCCCTGGGGGAATTTCAGCTATGGGTCAACCTGCACCTTCC
ATTGTCCAGAGGGTCATTTACTTAATGGCTCTGCCAGAGCAGCATGCCAAGAGAATGGACACTG
GTCAGCTACCACACCAACGTGCCAAGAGGGGCCATTGACTGTCCAGGAGGCCCTGACTTACTTT
GGTGGAGCTGTGGCTTCTACAATAGGTCTGGTCATGGGTGGGACACTCTTGGCTCTGCTGAGAA
AGCGTCTCAGGAAGAAAGATGACGGGAAATGCCCCCTGAACCCTCAAAGCCACCTTGGAACATA
CGGAGTTTTTACAAATGCTGCATTTGACCCGAACCCTTAAGAGGCCTATCTCCCAACCTCTCAG
GATCCTAGTTGGTGAACATGGAGCTTTCTGCTAAACTTGACTTAAACTGTAGCACAGTTGTGGC
AGTTTTCTGTTACCCCCTGGATAAGGGCATGGACTCTCCTTTAGACCAACTCTGGATCAGAGCA
GAGGACTGTGCCATGTTCTGACCTCCCCATCACCCCCTTCCTGCTCCACCTCTGCTCTTCCTCC
AACACAAGCTGCTGACGCCAAGAGCAAATGTTTGTGCTGTGGTCTGTGGACTTGAACATGGCTG
TCACTGGAAATACCAGCTAATCAAAGAGACCAGAGTGTTTGACTCACCAGGAGACCAGACTGGA
GAAATGAAAATACCCCTTTATTTGGGGGTTAAGGAAGGCTTCTCTGCAGTGTTGGAAGCCAGGC
ACATCTCTGACTTCAGGAAACCCCAGCATGATCTCCCAGAACTCCAGTGGTTGCTGTCAATGAG
GAGCCTTAGACCTCTGCTGCTGAGGTTTCCAGAGAAACCTGGGATGGTACCCAAGGCTATAGAA
GACCAAGAATCAGAACAGGAAGCTCCATCTCACTATAGATCTTATCAAAGGACCCAAAGACCAA
TTAAATGGATTTGCC

hide sequence

Protein Sequences


Protein RefSeqs	XP_021578349	(Get FASTA)	NCBI Sequence Viewer
	XP_021578350	(Get FASTA)	NCBI Sequence Viewer
	XP_021578352	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000008012.3
	ENSSTOP00000030185.1
GenBank Protein	KAG3258777	(Get FASTA)	NCBI Sequence Viewer
	KAG3258778	(Get FASTA)	NCBI Sequence Viewer
	KAG3258779	(Get FASTA)	NCBI Sequence Viewer
	KAG3258780	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_021578349 ⟸ XM_021722674
- Peptide Label:	isoform X1
- UniProtKB:	I3MCL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSCLKAIWILRSQRVVFGAAQLLWFGALISELTNQKEVTAWTYNYSIKAYPWNYSRAFCQKHF TDLVAIQNKNEIAHLNEVIPYYSSYYWIGIRKINNKWTWVGTKKALTEEAENWADNEPNNKRNN QDCVEIYIKSLSAPGKWNDEPCGKRKRALCYTASCHDMSCSKQGDCIETIGNYTCSCHPGFHGP ECEYVRECGEFGLPQHVFMNCSHPLGHFSFNSQCTLHCAEGYELNGPSQLKCLASGIWTQKPPQ CVAVQCQHLEAPDNGTMDCVHPLAAFAYGSRCSFECQPGYRIRGLDTLHCIGPGQWTAPLPTCE ALACEPLESPDHGSMECSPSSRAFQYNSRCSFHCTEGFLLRGADVVWCADLGQWTAPAPMCQAV QCQDLPAPHRAQVNCSHPSGSFRYQSVCSFTCEEGSLLVGEGELRCLATGHWSAAPPECQAVTC SPLLSPQNGTMTCTRPFGESSYKATCQFICEEGFSLSGPERLDCTPSGQWTGSPPRCEGIASVS TSKVQCPALVASGQGTMTCRHTGENFGLDTTCYFGCKAGFTLTGDSTLKCNPSGQWTAVTPACR AIKCPELHINKPTVMNCSNPWGNFSYGSTCTFHCPEGHLLNGSARAACQENGHWSATTPTCQEG PLTVQEALTYFGGAVASTIGLVMGGTLLALLRKRLRKKDDGKCPLNPQSHLGTYGVFTNAAFDP NP hide sequence

RefSeq Acc Id:	XP_021578352 ⟸ XM_021722677
- Peptide Label:	isoform X3
- UniProtKB:	I3MCL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSCLKAIWILRSQRVVFGAAQLLWFGALISELTNQKEVTAWTYNYSIKAYPWNYSRAFCQKHF TDLVAIQNKNEIAHLNEVIPYYSSYYWIGIRKINNKWTWVGTKKALTEEAENWADNEPNNKRNN QDCVEIYIKSLSAPGKWNDEPCGKRKRALCYTASCHDMSCSKQGDCIETIGNYTCSCHPGFHGP ECEYVRECGEFGLPQHVFMNCSHPLGHFSFNSQCTLHCAEGYELNGPSQLKCLASGIWTQKPPQ CVAVQCQHLEAPDNGTMDCVHPLAAFAYGSRCSFECQPGYRIRGLDTLHCIGPGQWTAPLPTCE ALACEPLESPDHGSMECSPSSRAFQYNSRCSFHCTEGFLLRGADVVWCADLGQWTAPAPMCQAV QCQDLPAPHRAQVNCSHPSGSFRYQSVCSFTCEEGSLLVGEGELRCLATGHWSAAPPECQAVTC SPLLSPQNGTMTCTRPFGESSYKATCQFICEEGFSLSGPERLDCTPSGQWTGSPPRCEAIKCPE LHINKPTVMNCSNPWGNFSYGSTCTFHCPEGHLLNGSARAACQENGHWSATTPTCQEGPLTVQE ALTYFGGAVASTIGLVMGGTLLALLRKRLRKKDDGKCPLNPQSHLGTYGVFTNAAFDPNP hide sequence

RefSeq Acc Id:	XP_021578350 ⟸ XM_021722675
- Peptide Label:	isoform X2
- UniProtKB:	I3MCL8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDSCLKAIWILRSQRVVFGAAQLLWFGALISELTNQKEVTAWTYNYSIKAYPWNYSRAFCQKHF TDLVAIQNKNEIAHLNEVIPYYSSYYWIGIRKINNKWTWVGTKKALTEEAENWADNEPNNKRNN QDCVEIYIKSLSAPGKWNDEPCGKRKRALCYTASCHDMSCSKQGDCIETIGNYTCSCHPGFHGP ECEYAVQCQHLEAPDNGTMDCVHPLAAFAYGSRCSFECQPGYRIRGLDTLHCIGPGQWTAPLPT CEALACEPLESPDHGSMECSPSSRAFQYNSRCSFHCTEGFLLRGADVVWCADLGQWTAPAPMCQ AVQCQDLPAPHRAQVNCSHPSGSFRYQSVCSFTCEEGSLLVGEGELRCLATGHWSAAPPECQAV TCSPLLSPQNGTMTCTRPFGESSYKATCQFICEEGFSLSGPERLDCTPSGQWTGSPPRCEGIAS VSTSKVQCPALVASGQGTMTCRHTGENFGLDTTCYFGCKAGFTLTGDSTLKCNPSGQWTAVTPA CRAIKCPELHINKPTVMNCSNPWGNFSYGSTCTFHCPEGHLLNGSARAACQENGHWSATTPTCQ EGPLTVQEALTYFGGAVASTIGLVMGGTLLALLRKRLRKKDDGKCPLNPQSHLGTYGVFTNAAF DPNP hide sequence

Ensembl Acc Id:

ENSSTOP00000030185 ⟸ ENSSTOT00000038926

Ensembl Acc Id:

ENSSTOP00000008012 ⟸ ENSSTOT00000008939

Protein Domains

C-type lectin EGF-like Sushi

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000008931	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000008939.3	UniProtKB/TrEMBL
	ENSSTOT00000038926.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.100.10	UniProtKB/TrEMBL
	Complement Module, domain 1	UniProtKB/TrEMBL
	Laminin	UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/TrEMBL
	C-type_lectin_CS	UniProtKB/TrEMBL
	Compl-Cell_Adhes-Reg	UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/TrEMBL
	EGF-like_dom	UniProtKB/TrEMBL
	Selectin_CTLD	UniProtKB/TrEMBL
	Selectin_superfamily	UniProtKB/TrEMBL
	Sushi/SCR/CCP_sf	UniProtKB/TrEMBL
	Sushi_SCR_CCP_dom	UniProtKB/TrEMBL
NCBI Gene	Selp	ENTREZGENE
PANTHER	COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING	UniProtKB/TrEMBL
	P-SELECTIN	UniProtKB/TrEMBL
Pfam	Lectin_C	UniProtKB/TrEMBL
	Sushi	UniProtKB/TrEMBL
PRINTS	SELECTIN	UniProtKB/TrEMBL
PROSITE	C_TYPE_LECTIN_1	UniProtKB/TrEMBL
	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
	EGF_1	UniProtKB/TrEMBL
	EGF_2	UniProtKB/TrEMBL
	EGF_3	UniProtKB/TrEMBL
	SUSHI	UniProtKB/TrEMBL
SMART	CCP	UniProtKB/TrEMBL
	CLECT	UniProtKB/TrEMBL
	EGF	UniProtKB/TrEMBL
Superfamily-SCOP	EGF/Laminin	UniProtKB/TrEMBL
	SSF56436	UniProtKB/TrEMBL
	SSF57535	UniProtKB/TrEMBL
UniProt	A0A287D9F3_ICTTR	UniProtKB/TrEMBL
	I3MCL8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-08-09	Selp	selectin P	LOC101970607	selectin P	Symbol and/or name change	5135510	APPROVED
2021-03-26	LOC101970607	selectin P	Selp	selectin P	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Annotations - PID (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - PID (archival)