Selp (selectin P) - Rat Genome Database

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Gene: Selp (selectin P) Heterocephalus glaber
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Symbol: Selp
Name: selectin P
RGD ID: 18901752
Description: ENCODES a protein that exhibits calcium ion binding (ortholog); calcium-dependent protein binding (ortholog); fucose binding (ortholog); INVOLVED IN calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); cell-cell adhesion (ortholog); heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules (ortholog); PARTICIPATES IN interleukin-4 signaling pathway; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); acute necrotizing pancreatitis (ortholog); allergic disease (ortholog); FOUND IN external side of plasma membrane (ortholog); extracellular space (ortholog); platelet alpha granule membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: P-selectin
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248267,511,646 - 7,537,924 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248267,510,039 - 7,544,332 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Selp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248267,511,646 - 7,537,924 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248267,510,039 - 7,544,332 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SELP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,588,849 - 169,630,124 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,588,849 - 169,630,193 (-)EnsemblGRCh38hg38GRCh38
GRCh371169,558,087 - 169,599,362 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,824,711 - 167,866,001 (-)NCBINCBI36Build 36hg18NCBI36
Build 341166,289,747 - 166,331,065NCBI
Celera1142,667,866 - 142,709,161 (-)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1140,780,771 - 140,822,069 (-)NCBIHuRef
CHM1_11170,980,248 - 171,021,531 (-)NCBICHM1_1
T2T-CHM13v2.01168,944,736 - 168,986,000 (-)NCBIT2T-CHM13v2.0
Selp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,942,833 - 163,977,595 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1163,942,833 - 163,977,595 (+)EnsemblGRCm39 Ensembl
GRCm381164,115,264 - 164,150,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,115,264 - 164,150,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,045,509 - 166,079,876 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361165,952,053 - 165,986,420 (+)NCBIMGSCv36mm8
MGSCv361165,306,067 - 165,340,774 (+)NCBIMGSCv36mm8
Celera1166,568,384 - 166,587,846 (+)NCBICelera
Cytogenetic Map1H2.2NCBI
cM Map171.42NCBI
Selp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81379,009,379 - 79,044,994 (+)NCBIGRCr8
mRatBN7.21376,476,229 - 76,511,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1376,476,295 - 76,511,845 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1379,094,917 - 79,130,437 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01380,398,945 - 80,434,427 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01377,653,541 - 77,689,020 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01382,428,914 - 82,464,629 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1382,429,063 - 82,464,628 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01387,308,435 - 87,344,164 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41379,886,614 - 79,922,180 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11379,910,278 - 79,936,368 (+)NCBI
Celera1376,209,805 - 76,244,685 (+)NCBICelera
RH 3.4 Map13482.6RGD
Cytogenetic Map13q23NCBI
Selp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554627,652,437 - 7,693,994 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554627,658,371 - 7,692,870 (+)NCBIChiLan1.0ChiLan1.0
SELP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2180,139,053 - 80,179,968 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1179,807,454 - 79,848,377 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01145,071,094 - 145,112,851 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,793,677 - 148,834,701 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,793,677 - 148,834,701 (-)Ensemblpanpan1.1panPan2
SELP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1728,956,428 - 28,997,266 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl728,958,486 - 28,996,313 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha728,490,155 - 28,527,988 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0728,758,392 - 28,799,283 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl728,760,327 - 28,798,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1728,608,516 - 28,646,330 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0728,644,251 - 28,682,064 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0728,881,019 - 28,918,852 (+)NCBIUU_Cfam_GSD_1.0
Selp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934499,229,898 - 99,265,758 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648117,076,536 - 17,107,963 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648117,076,660 - 17,112,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl481,365,740 - 81,399,955 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1481,376,804 - 81,401,240 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2489,001,468 - 89,025,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SELP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12559,420,910 - 59,465,140 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2559,433,333 - 59,462,598 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605561,082,227 - 61,140,767 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002541   ⟹   ENSHGLP00000002490
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248267,511,646 - 7,537,924 (-)Ensembl
RefSeq Acc Id: XM_004865229   ⟹   XP_004865286
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248267,510,039 - 7,544,332 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004865286 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002490
RefSeq Acc Id: XP_004865286   ⟸   XM_004865229
- UniProtKB: A0AAX6Q1I0 (UniProtKB/TrEMBL),   G5CB45 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002490   ⟸   ENSHGLT00000002541


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001876 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002541 ENTREZGENE
Gene3D-CATH Complement Module, domain 1 UniProtKB/TrEMBL
  Mannose-Binding Protein A, subunit A UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  C-type_lectin_CS UniProtKB/TrEMBL
  Compl-Cell_Adhes-Reg UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  Selectin_CTLD UniProtKB/TrEMBL
  Selectin_superfamily UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/TrEMBL
NCBI Gene Selp ENTREZGENE
PANTHER COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING UniProtKB/TrEMBL
  E-SELECTIN UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
  Sushi UniProtKB/TrEMBL
PRINTS SELECTIN UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/TrEMBL
  C_TYPE_LECTIN_2 UniProtKB/TrEMBL
  EGF_1 UniProtKB/TrEMBL
  EGF_2 UniProtKB/TrEMBL
  EGF_3 UniProtKB/TrEMBL
  SUSHI UniProtKB/TrEMBL
SMART CCP UniProtKB/TrEMBL
  CLECT UniProtKB/TrEMBL
Superfamily-SCOP C-type lectin-like UniProtKB/TrEMBL
  Complement control module/SCR domain UniProtKB/TrEMBL
UniProt A0AAX6Q1I0 ENTREZGENE, UniProtKB/TrEMBL
  G5CB45 ENTREZGENE, UniProtKB/TrEMBL