Selp (selectin, platelet) - Rat Genome Database

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Gene: Selp (selectin, platelet) Mus musculus
Analyze
Symbol: Selp
Name: selectin, platelet
RGD ID: 734150
MGI Page MGI
Description: Enables calcium-dependent protein binding activity and sialic acid binding activity. Involved in positive regulation of leukocyte tethering or rolling and positive regulation of platelet activation. Acts upstream of or within several processes, including heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; leukocyte tethering or rolling; and positive regulation of leukocyte migration. Located in external side of plasma membrane. Is expressed in blood and liver. Human ortholog(s) of this gene implicated in atopic dermatitis and myocardial infarction. Orthologous to human SELP (selectin P).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: CD62; CD62 antigen-like family member P; CD62P; GMP-140; Gr; granule membrane protein 140; Grmp; LECAM3; leukocyte-endothelial cell adhesion molecule 3; MGC129336; MGC129337; P selectin; P-sel; P-selectin; PADGEM; platelet activation dependent granule-external membrane protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,942,833 - 163,977,595 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1163,942,833 - 163,977,595 (+)EnsemblGRCm39 Ensembl
GRCm381164,115,264 - 164,150,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,115,264 - 164,150,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,045,509 - 166,079,876 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361165,952,053 - 165,986,420 (+)NCBIMGSCv36mm8
MGSCv361165,306,067 - 165,340,774 (+)NCBIMGSCv36mm8
Celera1166,568,384 - 166,587,846 (+)NCBICelera
Cytogenetic Map1H2.2NCBI
cM Map171.42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (ISO)
(R)-linalyl acetate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP)
2-acetyl-1-alkyl-sn-glycero-3-phosphocholine  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3-[3-(tert-butylsulfanyl)-1-(4-chlorobenzyl)-5-(propan-2-yl)-1H-indol-2-yl]-2,2-dimethylpropanoic acid  (ISO)
3-methylcholanthrene  (EXP)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
4-hydroxyphenyl retinamide  (EXP)
6-propyl-2-thiouracil  (ISO)
acetaldehyde  (ISO)
acetamide  (ISO)
acetylsalicylic acid  (ISO)
ADP  (ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
amlodipine  (ISO)
ammonium chloride  (ISO)
anandamide  (ISO)
antirheumatic drug  (ISO)
arachidonic acid  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
biotin  (EXP)
bisphenol A  (EXP,ISO)
bivalirudin  (ISO)
budesonide  (ISO)
Calcimycin  (ISO)
cangrelor  (ISO)
carbon monoxide  (ISO)
carbon nanotube  (EXP)
carrageenan  (ISO)
catechol  (EXP)
CGP 52608  (ISO)
chloramine T  (ISO)
choline  (EXP)
cimetidine  (ISO)
clopidogrel  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
curcumin  (ISO)
D-glucose  (ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
Dibutyl phosphate  (ISO)
dichlorine  (ISO)
diclofenac  (ISO)
dioxygen  (EXP,ISO)
enalapril  (EXP,ISO)
endosulfan  (ISO)
estrone  (ISO)
ethanol  (ISO)
fenvalerate  (ISO)
genistein  (EXP,ISO)
glucose  (ISO)
glyphosate  (ISO)
heparin  (ISO)
hydroquinone  (EXP)
indometacin  (EXP)
L-methionine  (EXP)
lead diacetate  (EXP)
leukotriene C4  (ISO)
leukotriene D4  (ISO)
linalyl acetate  (EXP)
lipopolysaccharide  (EXP,ISO)
lipoxin A4  (ISO)
losartan  (ISO)
manganese(II) chloride  (ISO)
metformin  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
N-acetyl-beta-D-glucosamine  (EXP)
N-acetyl-D-glucosamine  (EXP)
N-formyl-L-methionyl-L-leucyl-L-phenylalanine  (ISO)
nebivolol  (ISO)
nickel atom  (ISO)
nickel sulfate  (EXP)
nitrogen dioxide  (ISO)
obeticholic acid  (EXP)
ozone  (EXP,ISO)
paclitaxel  (ISO)
paracetamol  (EXP)
paraquat  (EXP,ISO)
parthenolide  (ISO)
PCB138  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
pioglitazone  (EXP)
pirinixic acid  (EXP)
poly(styrene)  (ISO)
pravastatin  (ISO)
progesterone  (ISO)
quercetin  (EXP,ISO)
resolvin D1  (EXP)
resveratrol  (ISO)
rosuvastatin calcium  (ISO)
sertraline  (ISO)
silicon dioxide  (EXP)
simvastatin  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (ISO)
streptozocin  (ISO)
sulforaphane  (EXP)
testosterone  (ISO)
tetrachloromethane  (ISO)
theaflavin  (EXP)
Theaflavin 3,3'-digallate  (ISO)
thioacetamide  (ISO)
titanium dioxide  (EXP,ISO)
tofacitinib  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP,ISO)
triphenyl phosphate  (ISO)
U-73122  (ISO)
valproic acid  (ISO)
XL147  (EXP)
zileuton  (EXP,ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal blood coagulation  (IAGP)
abnormal blood homeostasis  (IAGP)
abnormal cellular extravasation  (IAGP)
abnormal cervical lymph node morphology  (IAGP)
abnormal chemokine secretion  (IAGP)
abnormal common myeloid progenitor cell morphology  (IAGP)
abnormal cytokine level  (IAGP)
abnormal cytokine secretion  (IAGP)
abnormal definitive hematopoiesis  (IAGP)
abnormal erythropoiesis  (IAGP)
abnormal glomerular capillary endothelium morphology  (IAGP)
abnormal granulocyte differentiation  (IAGP)
abnormal leukocyte adhesion  (IAGP)
abnormal leukocyte cell number  (IAGP)
abnormal leukocyte migration  (IAGP)
abnormal leukocyte tethering or rolling  (IAGP)
abnormal liver physiology  (IAGP)
abnormal lung morphology  (IAGP)
abnormal lung vasculature morphology  (IAGP)
abnormal lymph node germinal center morphology  (IAGP)
abnormal lymph node secondary follicle morphology  (IAGP)
abnormal myelopoiesis  (IAGP)
abnormal neutrophil physiology  (IAGP)
abnormal pilomotor reflex  (IAGP)
abnormal renal glomerular capsule morphology  (IAGP)
abnormal renal glomerulus morphology  (IAGP)
abnormal spleen B cell follicle morphology  (IAGP)
abnormal spleen B cell follicle shape  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal T cell physiology  (IAGP)
abnormal vascular endothelial cell morphology  (IAGP)
decreased acute inflammation  (IAGP)
decreased circulating alanine transaminase level  (IAGP)
decreased locomotor activity  (IAGP)
decreased mast cell number  (IAGP)
decreased spleen B cell follicle number  (IAGP)
decreased susceptibility to type IV hypersensitivity reaction  (IAGP)
dermatitis  (IAGP)
edema  (IAGP)
enlarged lymph nodes  (IAGP)
expanded mesangial matrix  (IAGP)
extramedullary hematopoiesis  (IAGP)
eye inflammation  (IAGP)
fused podocyte foot processes  (IAGP)
glomerular crescent  (IAGP)
glomerulonephritis  (IAGP)
head tilt  (IAGP)
hemorrhage  (IAGP)
hepatic necrosis  (IAGP)
impaired eosinophil recruitment  (IAGP)
impaired hematopoiesis  (IAGP)
impaired leukocyte tethering or rolling  (IAGP)
impaired macrophage chemotaxis  (IAGP)
impaired neutrophil chemotaxis  (IAGP)
impaired neutrophil recruitment  (IAGP)
increased bleeding time  (IAGP)
increased circulating interleukin-3 level  (IAGP)
increased eosinophil cell number  (IAGP)
increased erythroid progenitor cell number  (IAGP)
increased IgG level  (IAGP)
increased leukocyte cell number  (IAGP)
increased lymphocyte cell number  (IAGP)
increased mesangial cell number  (IAGP)
increased monocyte cell number  (IAGP)
increased neutrophil cell number  (IAGP)
increased spleen red pulp amount  (IAGP)
increased spleen weight  (IAGP)
increased susceptibility to bacterial infection  (IAGP)
increased susceptibility to induced arthritis  (IAGP)
kidney failure  (IAGP)
lung inflammation  (IAGP)
podocyte foot process effacement  (IAGP)
premature death  (IAGP)
renal glomerular synechia  (IAGP)
renal glomerulus fibrosis  (IAGP)
renal necrosis  (IAGP)
renal tubule atrophy  (IAGP)
skin edema  (IAGP)
skin hemorrhage  (IAGP)
spinning  (IAGP)
spleen hyperplasia  (IAGP)
spontaneous skin ulceration  (IAGP)
tremors  (IAGP)
vascular inflammation  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Association between P-selectin gene polymorphisms and soluble P-selectin levels and their relation to coronary artery disease. Barbaux SC, etal., Arterioscler Thromb Vasc Biol. 2001 Oct;21(10):1668-73.
2. Novel case-control test in a founder population identifies P-selectin as an atopy-susceptibility locus. Bourgain C, etal., Am J Hum Genet. 2003 Sep;73(3):612-26. Epub 2003 Aug 15.
3. Dysregulated selectin expression and monocyte recruitment during ischemia-related vascular remodeling in diabetes mellitus. Carr CL, etal., Arterioscler Thromb Vasc Biol. 2011 Nov;31(11):2526-33.
4. Reduced plasma levels of P-selectin and L-selectin in a pilot study from Alzheimer disease: relationship with neuro-degeneration. Corsi MM, etal., Biogerontology. 2011 Oct;12(5):451-4. Epub 2011 Apr 12.
5. P-selectin inhibition reduces severity of acute experimental pancreatitis. Hackert T, etal., Pancreatology. 2009;9(4):369-74. Epub 2009 May 19.
6. Hypothermia-induced activation of the splenic platelet pool as a risk factor for thrombotic disease in a mouse model. Horioka K, etal., J Thromb Haemost. 2019 Oct;17(10):1762-1771. doi: 10.1111/jth.14555. Epub 2019 Jul 17.
7. Intestinal ischemia-reperfusion injury leads to inflammatory changes in the brain. Hsieh YH, etal., Shock. 2011 Oct;36(4):424-30.
8. Effect of apocynin, a NADPH oxidase inhibitor, on acute lung inflammation. Impellizzeri D, etal., Biochem Pharmacol. 2011 Mar 1;81(5):636-48. Epub 2010 Dec 11.
9. Reduced blood brain barrier breakdown in P-selectin deficient mice following transient ischemic stroke: a future therapeutic target for treatment of stroke. Jin AY, etal., BMC Neurosci. 2010 Feb 2;11:12.
10. Molecular imaging of the initial inflammatory response in atherosclerosis: implications for early detection of disease. Kaufmann BA, etal., Arterioscler Thromb Vasc Biol. 2010 Jan;30(1):54-9. Epub 2009 Oct 15.
11. Urine Peptidomic and Targeted Plasma Protein Analyses in the Diagnosis and Monitoring of Systemic Juvenile Idiopathic Arthritis. Ling XB, etal., Clin Proteomics. 2010 Dec;6(4):175-193. Epub 2010 Sep 30.
12. Levels of soluble adhesion molecules in patients with various clinical presentations of coronary atherosclerosis. Lu HH, etal., Chin Med J (Engl). 2010 Nov;123(21):3123-6.
13. Intrathecal cytokine and chemokine profiling in neuropsychiatric lupus or lupus complicated with central nervous system infection. Lu XY, etal., Lupus. 2010 May;19(6):689-95. Epub 2010 Feb 23.
14. Increased platelet and microparticle activation in HIV infection: upregulation of P-selectin and tissue factor expression. Mayne E, etal., J Acquir Immune Defic Syndr. 2011 Dec 9.
15. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
16. MGDs mouse GO annotations MGD data from the GO Consortium
17. MGD IEA MGD IEA
18. Markers of endothelial dysfunction, coagulation and tissue fibrosis independently predict venous thromboembolism in HIV. Musselwhite LW, etal., AIDS. 2011 Mar 27;25(6):787-95.
19. Investigation of Thr715Pro P-selectin gene polymorphism and soluble P-selectin levels in type 2 diabetes mellitus. Nagy B Jr, etal., Thromb Haemost. 2007 Jul;98(1):186-91.
20. Activation of platelets and cellular coagulation in cerebral small-vessel disease. Oberheiden T, etal., Blood Coagul Fibrinolysis. 2010 Dec;21(8):729-35.
21. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
22. [Integrin-associated proteins in blood plasma of patients with acute exacerbation of chronic obstructive pulmonary disease]. Pan L, etal., Zhonghua Jie He He Hu Xi Za Zhi. 2010 Apr;33(4):265-7.
23. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
24. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
25. P-selectin-mediated platelet-neutrophil aggregate formation activates neutrophils in mouse and human sickle cell disease. Polanowska-Grabowska R, etal., Arterioscler Thromb Vasc Biol. 2010 Dec;30(12):2392-9. Epub 2010 Nov 11.
26. Assessment of the influence of the inflammatory process on the activation of blood platelets and morphological parameters in patients with ulcerative colitis (colitis ulcerosa). Polinska B, etal., Folia Histochem Cytobiol. 2011;49(1):119-24.
27. Mouse MP Annotation Import Pipeline RGD automated import pipeline
28. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
29. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
30. Spleen tyrosine kinase promotes acute neutrophil-mediated glomerular injury via activation of JNK and p38 MAPK in rat nephrotoxic serum nephritis. Ryan J, etal., Lab Invest. 2011 Dec;91(12):1727-38. doi: 10.1038/labinvest.2011.137. Epub 2011 Sep 5.
31. Inhibition of platelet activation in rats with severe congestive heart failure by a novel endothelial nitric oxide synthase transcription enhancer. Schafer A, etal., Eur J Heart Fail. 2009 Apr;11(4):336-41. Epub 2009 Feb 3.
32. Association between increased platelet P-selectin expression and obesity in patients with type 2 diabetes: a BARI 2D (Bypass Angioplasty Revascularization Investigation 2 Diabetes) substudy. Schneider DJ, etal., Diabetes Care. 2009 May;32(5):944-9. Epub 2009 Feb 19.
33. Lactobacillus reuteri prevents colitis by reducing P-selectin-associated leukocyte- and platelet-endothelial cell interactions. Schreiber O, etal., Am J Physiol Gastrointest Liver Physiol. 2009 Mar;296(3):G534-42. Epub 2009 Jan 15.
34. Increased levels of circulating microparticles in primary Sjogren's syndrome, systemic lupus erythematosus and rheumatoid arthritis and relation with disease activity. Sellam J, etal., Arthritis Res Ther. 2009;11(5):R156. Epub 2009 Oct 15.
35. P-selectin mediates the microvascular dysfunction associated with persistent cytomegalovirus infection in normocholesterolemic and hypercholesterolemic mice. Senchenkov E, etal., Microcirculation. 2011 Aug;18(6):452-62. doi: 10.1111/j.1549-8719.2011.00106.x.
36. Oxidative stress and defective platelet apoptosis in naive patients with Kawasaki disease. Straface E, etal., Biochem Biophys Res Commun. 2010 Feb 12;392(3):426-30. Epub 2010 Jan 15.
37. [Volatile oil of Magnolia biondii inhibits expressions of P-selectin protein in serum and renal tissue of rats with diabetic nephropathy] Sun XP, etal., Zhong Xi Yi Jie He Xue Bao. 2008 May;6(5):524-9.
38. Specific haplotypes of the P-selectin gene are associated with myocardial infarction. Tregouet DA, etal., Hum Mol Genet. 2002 Aug 15;11(17):2015-23.
39. Curcumin modulates leukocyte and platelet adhesion in murine sepsis. Vachharajani V, etal., Microcirculation. 2010 Aug;17(6):407-16.
40. Platelet reactivity and response to aspirin in subjects with the metabolic syndrome. Vaduganathan M, etal., Am Heart J. 2008 Nov;156(5):1002.e1-1002.e7.
41. Prognostic value of plasma soluble P-selectin and von Willebrand factor as indices of platelet activation and endothelial damage/dysfunction in high-risk patients with hypertension: a sub-study of the Anglo-Scandinavian Cardiac Outcomes Trial. Varughese GI, etal., J Intern Med. 2007 Apr;261(4):384-91.
42. Aberrant expression of soluble co-stimulatory molecules and adhesion molecules in type 2 diabetic patients with nephropathy. Wong CK, etal., J Clin Immunol. 2008 Jan;28(1):36-43. Epub 2007 Nov 17.
43. Protective effect of glutathione against liver warm ischemia-reperfusion injury in rats is associated with regulation of P-selectin and neutrophil infiltration. Xue F, etal., Anat Rec (Hoboken). 2008 Aug;291(8):1016-22.
44. Dynamic expression of the main related indicators of thrombosis, inflammatory reaction and tissue damage in a rat model of myocardial infarction. Xue M, etal., Mol Med Report. 2011 Jul-Aug;4(4):693-6. doi: 10.3892/mmr.2011.485. Epub 2011 May 5.
45. Inhibition of semicarbazide-sensitive amine oxidase attenuates myocardial ischemia-reperfusion injury in an in vivo rat model. Yang W, etal., Life Sci. 2011 Feb 14;88(7-8):302-6. Epub 2010 Dec 10.
46. Alterations of Bone Marrow Sinusoidal Endothelium in Rat and Patients with Liver Cirrhosis. Zhao S, etal., Dig Dis Sci. 2009 Apr 1.
47. L-Selectin and P-Selectin Are Novel Biomarkers of Cervicovaginal Inflammation for Preclinical Mucosal Safety Assessment of Anti-HIV-1 Microbicide. Zhong M, etal., Antimicrob Agents Chemother. 2012 Mar 5.
48. Fibrinogen and P-selectin expression in atherosclerosis model of Sprague Dawley rat. Zhou BR, etal., Chin Med J (Engl). 2011 Nov;124(22):3768-72.
49. Administration of recombinant P-selectin glycoprotein ligand Fc fusion protein suppresses inflammation and neointimal formation in Zucker diabetic rat model. Zhou Z, etal., Arterioscler Thromb Vasc Biol 2002 Oct 1;22(10):1598-603.
Additional References at PubMed
PMID:1378846   PMID:1379089   PMID:1694218   PMID:1717161   PMID:7524641   PMID:7535798   PMID:7539046   PMID:7542213   PMID:7542495   PMID:7579454   PMID:7587631   PMID:7688665  
PMID:7898049   PMID:8104338   PMID:8551244   PMID:8557754   PMID:8562500   PMID:8598043   PMID:8608210   PMID:8642341   PMID:8647940   PMID:8661716   PMID:8731099   PMID:8851663  
PMID:8867669   PMID:8874194   PMID:8906840   PMID:9045883   PMID:9048906   PMID:9219035   PMID:9252509   PMID:9285631   PMID:9293869   PMID:9329976   PMID:9362259   PMID:9376320  
PMID:9416901   PMID:9440702   PMID:9476909   PMID:9486531   PMID:9500515   PMID:9531595   PMID:9545353   PMID:9545354   PMID:9564894   PMID:9612391   PMID:9637528   PMID:9712820  
PMID:9746442   PMID:9746773   PMID:9789257   PMID:9815095   PMID:9817767   PMID:9881978   PMID:9927670   PMID:10048443   PMID:10074481   PMID:10075976   PMID:10081641   PMID:10213866  
PMID:10228023   PMID:10349636   PMID:10352295   PMID:10364560   PMID:10410991   PMID:10444525   PMID:10447722   PMID:10453030   PMID:10477616   PMID:10500197   PMID:10501973   PMID:10512519  
PMID:10605723   PMID:10605793   PMID:10620617   PMID:10627279   PMID:10666212   PMID:10670575   PMID:10679084   PMID:10749569   PMID:10816450   PMID:10836378   PMID:10841555   PMID:10894166  
PMID:10898496   PMID:10922068   PMID:10926756   PMID:10940927   PMID:11042159   PMID:11045953   PMID:11050049   PMID:11053286   PMID:11071623   PMID:11071658   PMID:11076861   PMID:11095738  
PMID:11120753   PMID:11123218   PMID:11157679   PMID:11158961   PMID:11159184   PMID:11181476   PMID:11197687   PMID:11217851   PMID:11247755   PMID:11283159   PMID:11301191   PMID:11468173  
PMID:11489951   PMID:11588037   PMID:11689459   PMID:11854515   PMID:11929781   PMID:11934816   PMID:11971023   PMID:12091345   PMID:12093896   PMID:12096034   PMID:12097407   PMID:12101263  
PMID:12149416   PMID:12161020   PMID:12165530   PMID:12165540   PMID:12193727   PMID:12202863   PMID:12223512   PMID:12234959   PMID:12370362   PMID:12370396   PMID:12374771   PMID:12391189  
PMID:12393631   PMID:12421976   PMID:12462561   PMID:12466851   PMID:12477932   PMID:12480714   PMID:12483207   PMID:12483549   PMID:12496439   PMID:12505044   PMID:12525563   PMID:12591228  
PMID:12615684   PMID:12654808   PMID:12707029   PMID:12781685   PMID:12782720   PMID:12829442   PMID:12858167   PMID:12871376   PMID:12881311   PMID:12885868   PMID:12920054   PMID:12960307  
PMID:12975470   PMID:14507656   PMID:14568948   PMID:14573677   PMID:14599851   PMID:14662752   PMID:14670846   PMID:14704223   PMID:14718670   PMID:14982832   PMID:14999686   PMID:15001561  
PMID:15050128   PMID:15059609   PMID:15072990   PMID:15086468   PMID:15117973   PMID:15213099   PMID:15271798   PMID:15280076   PMID:15304396   PMID:15331369   PMID:15367439   PMID:15466618  
PMID:15466915   PMID:15484189   PMID:15528309   PMID:15550557   PMID:15557205   PMID:15633604   PMID:15676218   PMID:15705798   PMID:15743805   PMID:15752767   PMID:15769890   PMID:15780986  
PMID:15880112   PMID:15921521   PMID:15947246   PMID:15956287   PMID:16002685   PMID:16141072   PMID:16141073   PMID:16155571   PMID:16199480   PMID:16207337   PMID:16314466   PMID:16314477  
PMID:16452210   PMID:16514062   PMID:16579979   PMID:16585587   PMID:16639002   PMID:16641139   PMID:16670333   PMID:16683915   PMID:16709860   PMID:16779968   PMID:16793654   PMID:16815892  
PMID:16936251   PMID:16951687   PMID:16980348   PMID:17056577   PMID:17065490   PMID:17082645   PMID:17095622   PMID:17114481   PMID:17114491   PMID:17142777   PMID:17143330   PMID:17151351  
PMID:17182955   PMID:17190826   PMID:17255363   PMID:17258081   PMID:17328072   PMID:17401367   PMID:17456770   PMID:17488661   PMID:17543554   PMID:17588134   PMID:17632516   PMID:17656447  
PMID:17675580   PMID:17763210   PMID:17938805   PMID:17996853   PMID:18032734   PMID:18056394   PMID:18086862   PMID:18256319   PMID:18256599   PMID:18381812   PMID:18504038   PMID:18505433  
PMID:18644365   PMID:18755847   PMID:18802014   PMID:18805956   PMID:18818407   PMID:19105599   PMID:19177138   PMID:19258505   PMID:19289576   PMID:19305412   PMID:19332769   PMID:19349303  
PMID:19349621   PMID:19389931   PMID:19414810   PMID:19593769   PMID:19666063   PMID:19667060   PMID:19730132   PMID:20008131   PMID:20010946   PMID:20056837   PMID:20208538   PMID:20223839  
PMID:20345490   PMID:20368416   PMID:20435690   PMID:20439727   PMID:20507363   PMID:20622117   PMID:20624949   PMID:20699442   PMID:20716766   PMID:20730909   PMID:21149548   PMID:21169400  
PMID:21232252   PMID:21257828   PMID:21267068   PMID:21350195   PMID:21356362   PMID:21457936   PMID:21633705   PMID:21677750   PMID:21705500   PMID:21803846   PMID:21873635   PMID:21889879  
PMID:21937690   PMID:22039451   PMID:22194593   PMID:22268115   PMID:22366582   PMID:22387552   PMID:22681228   PMID:22836751   PMID:22863835   PMID:23039181   PMID:23174624   PMID:23219751  
PMID:23235150   PMID:23382219   PMID:23402318   PMID:23485468   PMID:23499761   PMID:23555611   PMID:23583643   PMID:23593361   PMID:23706740   PMID:23922938   PMID:24043765   PMID:24177139  
PMID:24576991   PMID:24606340   PMID:24632801   PMID:24740164   PMID:24755410   PMID:24846287   PMID:24903095   PMID:24925970   PMID:25105362   PMID:25161653   PMID:25274531   PMID:25326535  
PMID:25477463   PMID:25675995   PMID:25681855   PMID:25747934   PMID:25762641   PMID:25773400   PMID:25775402   PMID:25865803   PMID:25892224   PMID:25948279   PMID:25964372   PMID:25979951  
PMID:25999791   PMID:26169941   PMID:26204458   PMID:26318439   PMID:26374999   PMID:26397744   PMID:26439305   PMID:26631722   PMID:26821950   PMID:26976330   PMID:27102967   PMID:27609642  
PMID:27744579   PMID:27779216   PMID:27877081   PMID:27943541   PMID:28150814   PMID:28432199   PMID:28515093   PMID:28954929   PMID:29351408   PMID:29419408   PMID:29437579   PMID:29560109  
PMID:29670076   PMID:29739756   PMID:29903733   PMID:30171023   PMID:30282719   PMID:30379850   PMID:30709741   PMID:30768917   PMID:30809798   PMID:30936549   PMID:31263109   PMID:31393790  
PMID:31968076   PMID:32195350   PMID:33232787   PMID:33619560   PMID:34433625   PMID:36172864   PMID:36932441   PMID:37188941   PMID:37322469   PMID:37629059   PMID:38355315  


Genomics

Comparative Map Data
Selp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391163,942,833 - 163,977,595 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1163,942,833 - 163,977,595 (+)EnsemblGRCm39 Ensembl
GRCm381164,115,264 - 164,150,026 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1164,115,264 - 164,150,026 (+)EnsemblGRCm38mm10GRCm38
MGSCv371166,045,509 - 166,079,876 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361165,952,053 - 165,986,420 (+)NCBIMGSCv36mm8
MGSCv361165,306,067 - 165,340,774 (+)NCBIMGSCv36mm8
Celera1166,568,384 - 166,587,846 (+)NCBICelera
Cytogenetic Map1H2.2NCBI
cM Map171.42NCBI
SELP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381169,588,849 - 169,630,124 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1169,588,849 - 169,630,193 (-)EnsemblGRCh38hg38GRCh38
GRCh371169,558,087 - 169,599,362 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361167,824,711 - 167,866,001 (-)NCBINCBI36Build 36hg18NCBI36
Build 341166,289,747 - 166,331,065NCBI
Celera1142,667,866 - 142,709,161 (-)NCBICelera
Cytogenetic Map1q24.2NCBI
HuRef1140,780,771 - 140,822,069 (-)NCBIHuRef
CHM1_11170,980,248 - 171,021,531 (-)NCBICHM1_1
T2T-CHM13v2.01168,944,736 - 168,986,000 (-)NCBIT2T-CHM13v2.0
Selp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81379,009,379 - 79,044,994 (+)NCBIGRCr8
mRatBN7.21376,476,229 - 76,511,846 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1376,476,295 - 76,511,845 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1379,094,917 - 79,130,437 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01380,398,945 - 80,434,427 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01377,653,541 - 77,689,020 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01382,428,914 - 82,464,629 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1382,429,063 - 82,464,628 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01387,308,435 - 87,344,164 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41379,886,614 - 79,922,180 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11379,910,278 - 79,936,368 (+)NCBI
Celera1376,209,805 - 76,244,685 (+)NCBICelera
RH 3.4 Map13482.6RGD
Cytogenetic Map13q23NCBI
Selp
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554627,652,437 - 7,693,994 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554627,658,371 - 7,692,870 (+)NCBIChiLan1.0ChiLan1.0
SELP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2180,139,053 - 80,179,968 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1179,807,454 - 79,848,377 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01145,071,094 - 145,112,851 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11148,793,677 - 148,834,701 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1148,793,677 - 148,834,701 (-)Ensemblpanpan1.1panPan2
SELP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1728,956,428 - 28,997,266 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl728,958,486 - 28,996,313 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha728,490,155 - 28,527,988 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0728,758,392 - 28,799,283 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl728,760,327 - 28,798,333 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1728,608,516 - 28,646,330 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0728,644,251 - 28,682,064 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0728,881,019 - 28,918,852 (+)NCBIUU_Cfam_GSD_1.0
Selp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934499,229,898 - 99,265,758 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648117,076,536 - 17,107,963 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648117,076,660 - 17,112,501 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SELP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl481,365,740 - 81,399,955 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1481,376,804 - 81,401,240 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2489,001,468 - 89,025,903 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SELP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12559,420,910 - 59,465,140 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2559,433,333 - 59,462,598 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605561,082,227 - 61,140,767 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Selp
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248267,511,646 - 7,537,924 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248267,510,039 - 7,544,332 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Selp
922 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1113
Count of miRNA genes:581
Interacting mature miRNAs:696
Transcripts:ENSMUST00000160000, ENSMUST00000161020, ENSMUST00000161152, ENSMUST00000162102, ENSMUST00000162746
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
27226767Tibl10_mtibia length 10, 10 week (mouse)1121727729164827569Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
27226799Feml5_mfemur length 5, 5 week (mouse)1122027729164827569Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
1302128Ity3_mimmunity to S. typhimurium 3 (mouse)Not determined11131156308165139464Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
13452397Leusq4_mleucocytosis susceptibility QTL 4 (mouse)1156602037170803640Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
13452394Leusq1_mleucocytosis susceptibility QTL 1 (mouse)1156602037168186402Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301232Hcs7_mhepatocarcinogenesis susceptibility 7 (mouse)Not determined1156602037168186402Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse

Markers in Region
M87861  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map1H2.2UniSTS
Whitehead/MRC_RH12085.98UniSTS


Sequence


Ensembl Acc Id: ENSMUST00000160000
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1163,968,887 - 163,970,361 (+)Ensembl
GRCm38.p6 Ensembl1164,141,318 - 164,142,792 (+)Ensembl
Ensembl Acc Id: ENSMUST00000161020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1163,972,271 - 163,977,580 (+)Ensembl
GRCm38.p6 Ensembl1164,144,702 - 164,150,011 (+)Ensembl
Ensembl Acc Id: ENSMUST00000161152   ⟹   ENSMUSP00000124231
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1163,969,446 - 163,976,710 (+)Ensembl
GRCm38.p6 Ensembl1164,141,877 - 164,149,141 (+)Ensembl
Ensembl Acc Id: ENSMUST00000162102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1163,974,332 - 163,976,723 (+)Ensembl
GRCm38.p6 Ensembl1164,146,763 - 164,149,154 (+)Ensembl
Ensembl Acc Id: ENSMUST00000162746   ⟹   ENSMUSP00000123924
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1163,942,833 - 163,977,595 (+)Ensembl
GRCm38.p6 Ensembl1164,115,264 - 164,150,026 (+)Ensembl
RefSeq Acc Id: NM_011347   ⟹   NP_035477
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391163,942,833 - 163,977,595 (+)NCBI
GRCm381164,115,264 - 164,150,026 (+)ENTREZGENE
MGSCv371166,045,509 - 166,079,876 (+)RGD
Celera1166,558,504 - 166,588,127 (+)ENTREZGENE
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_035477   ⟸   NM_011347
- Peptide Label: precursor
- UniProtKB: Q32MF1 (UniProtKB/Swiss-Prot),   Q01102 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000123924   ⟸   ENSMUST00000162746
Ensembl Acc Id: ENSMUSP00000124231   ⟸   ENSMUST00000161152
Protein Domains
C-type lectin   EGF-like   Sushi

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q01102-F1-model_v2 AlphaFold Q01102 1-768 view protein structure

Promoters
RGD ID:6875504
Promoter ID:EPDNEW_M1203
Type:multiple initiation site
Name:Selp_1
Description:Mus musculus selectin, platelet , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381164,115,362 - 164,115,422EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98280 AgrOrtholog
Ensembl Genes ENSMUSG00000026580 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000161152.8 UniProtKB/TrEMBL
  ENSMUST00000162746 ENTREZGENE
  ENSMUST00000162746.2 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.100.10 UniProtKB/Swiss-Prot
  Complement Module, domain 1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Laminin UniProtKB/Swiss-Prot
InterPro C-type_lectin-like UniProtKB/Swiss-Prot
  C-type_lectin-like/link_sf UniProtKB/Swiss-Prot
  C-type_lectin_CS UniProtKB/Swiss-Prot
  Compl-Cell_Adhes-Reg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTDL_fold UniProtKB/Swiss-Prot
  EGF-like_Ca-bd_dom UniProtKB/Swiss-Prot
  EGF-like_dom UniProtKB/Swiss-Prot
  Selectin_CTLD UniProtKB/Swiss-Prot
  Selectin_superfamily UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi/SCR/CCP_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sushi_SCR_CCP_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20344 UniProtKB/Swiss-Prot
MGD MGI:98280 ENTREZGENE
NCBI Gene 20344 ENTREZGENE
PANTHER COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  P-SELECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam EGF UniProtKB/Swiss-Prot
  Lectin_C UniProtKB/Swiss-Prot
  Sushi UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Selp PhenoGen
PRINTS SELECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE C_TYPE_LECTIN_1 UniProtKB/Swiss-Prot
  C_TYPE_LECTIN_2 UniProtKB/Swiss-Prot
  EGF_1 UniProtKB/Swiss-Prot
  EGF_2 UniProtKB/Swiss-Prot
  EGF_3 UniProtKB/Swiss-Prot
  SUSHI UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART CCP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CLECT UniProtKB/Swiss-Prot
  EGF UniProtKB/Swiss-Prot
  EGF_CA UniProtKB/Swiss-Prot
Superfamily-SCOP EGF/Laminin UniProtKB/Swiss-Prot
  SSF56436 UniProtKB/Swiss-Prot
  SSF57535 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F6TL88_MOUSE UniProtKB/TrEMBL
  LYAM3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q32MF1 ENTREZGENE
  Q3UWM1_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q32MF1 UniProtKB/Swiss-Prot