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Gene: Nsf (N-ethylmaleimide sensitive factor, vesicle fusing ATPase) Ictidomys tridecemlineatus

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Symbol:

Nsf

Name:

N-ethylmaleimide sensitive factor, vesicle fusing ATPase

RGD ID:

12464217

Description:

ENCODES a protein that exhibits ATP hydrolysis activity (ortholog); ATP-dependent protein binding (ortholog); D1 dopamine receptor binding (ortholog); INVOLVED IN positive regulation of receptor-mediated endocytosis (ortholog); potassium ion transport (ortholog); protein-containing complex disassembly (ortholog); ASSOCIATED WITH autism spectrum disorder (ortholog); developmental and epileptic encephalopathy 96 (ortholog); hereditary breast ovarian cancer syndrome (ortholog); FOUND IN dendritic shaft (ortholog); GABA-ergic synapse (ortholog); Golgi stack (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

N-ethylmaleimide sensitive factor, vesicle fusing ATPase, transcript variant X1; N-ethylmaleimide sensitive factor, vesicle fusing ATPase, transcript variant X2; vesicle-fusing ATPase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	17,057,557 - 17,205,506 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	1,987,326 - 2,137,067 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	1,989,092 - 2,137,006 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autism spectrum disorder (ISO)

developmental and epileptic encephalopathy 96 (ISO)

hereditary breast ovarian cancer syndrome (ISO)

temporal lobe epilepsy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Golgi to plasma membrane protein transport (IEA)

intra-Golgi vesicle-mediated transport (IEA)

intracellular protein transport (IEA)

positive regulation of protein catabolic process (IEA)

positive regulation of receptor recycling (IEA)

positive regulation of receptor-mediated endocytosis (ISO)

potassium ion transport (IEA,ISO)

protein transport (IEA)

protein-containing complex disassembly (ISO)

regulation of exocytosis (ISO)

regulation of receptor internalization (ISO)

SNARE complex disassembly (IEA)

vesicle-mediated transport (IEA,ISO)

Cellular Component

cytoplasm (IEA)

cytosol (IEA)

dendritic shaft (ISO)

GABA-ergic synapse (ISO)

Golgi apparatus (IEA)

Golgi stack (IEA,ISO)

plasma membrane (IEA)

postsynaptic specialization, intracellular component (ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA,ISO)

ATP-dependent protein binding (ISO)

D1 dopamine receptor binding (ISO)

hydrolase activity (IEA)

ionotropic glutamate receptor binding (IEA,ISO)

metal ion binding (IEA)

PDZ domain binding (IEA)

protein binding (ISO)

protein kinase binding (IEA)

protein serine/threonine kinase binding (ISO)

protein-containing complex binding (IEA)

small GTPase binding (ISO)

syntaxin binding (IEA)

syntaxin-1 binding (IEA)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

Nsf
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	17,057,557 - 17,205,506 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936541	1,987,326 - 2,137,067 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936541	1,989,092 - 2,137,006 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NSF
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	17	46,590,669 - 46,757,464 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	17	46,590,669 - 46,757,679 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	17	44,668,035 - 44,834,830 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	17	42,023,354 - 42,190,000 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	17	42,023,397 - 42,189,993	NCBI
Celera	17	41,231,619 - 41,284,321 (+)	NCBI		Celera
Cytogenetic Map	17	q21.31	NCBI
HuRef	17	40,092,157 - 40,095,514 (+)	NCBI		HuRef
HuRef	17	40,144,350 - 40,213,196 (+)	NCBI		HuRef
CHM1_1	17	44,732,424 - 44,898,954 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	17	47,452,259 - 47,618,933 (+)	NCBI		T2T-CHM13v2.0

Nsf
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	103,712,608 - 103,844,882 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	103,712,608 - 103,844,882 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	103,821,782 - 103,954,056 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	103,821,782 - 103,954,056 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	103,683,096 - 103,815,370 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	103,637,872 - 103,770,146 (-)	NCBI		MGSCv36	mm8
Celera	11	115,536,808 - 115,669,815 (-)	NCBI		Celera
Cytogenetic Map	11	E1	NCBI
cM Map	11	67.54	NCBI

Nsf
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	10	89,227,937 - 89,357,383 (-)	NCBI		GRCr8
mRatBN7.2	10	88,727,912 - 88,857,375 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	10	88,727,912 - 88,857,386 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	10	93,766,004 - 93,896,184 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	10	93,231,131 - 93,359,684 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	10	88,624,517 - 88,754,710 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	10	91,879,608 - 91,986,242 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	10	91,878,633 - 92,008,082 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	10	91,645,985 - 91,751,551 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	10	92,974,385 - 93,082,222 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	10	92,988,754 - 93,118,400 (-)	NCBI
Celera	10	87,428,233 - 87,533,296 (-)	NCBI		Celera
Cytogenetic Map	10	q32.1	NCBI

Nsf
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955478	10,610,619 - 10,732,656 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955478	10,610,715 - 10,732,656 (+)	NCBI	ChiLan1.0	ChiLan1.0

NSF
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	19	18,259,662 - 18,426,098 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	17	20,225,947 - 20,392,295 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	17	10,746,423 - 10,912,784 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	17	10,923,875 - 11,056,565 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	17	10,923,875 - 11,057,426 (-)	Ensembl	panpan1.1		panPan2

NSF
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	9,927,149 - 10,072,656 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	9,927,068 - 10,071,272 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	10,225,793 - 10,371,295 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	11,518,063 - 11,663,166 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	11,517,317 - 11,663,164 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	10,528,956 - 10,674,213 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	16,847,857 - 16,992,907 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	16,795,635 - 16,941,205 (-)	NCBI		UU_Cfam_GSD_1.0

NSF
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	12	17,459,077 - 17,705,351 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	12	17,458,996 - 17,624,335 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	12	17,490,697 - 17,656,813 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

NSF
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	16	60,308,000 - 60,467,596 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	16	60,308,008 - 60,465,731 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666077	31,029,330 - 31,190,857 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Nsf
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624849	2,732,792 - 2,865,569 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624849	2,711,426 - 2,865,569 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005328151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021728362	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000662	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSTOT00000028903 ⟹ ENSSTOP00000017448

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
SpeTri2.0 Ensembl	NW_004936541	1,987,326 - 2,137,067 (-)	Ensembl

RefSeq Acc Id:

XM_005328151 ⟹ XP_005328208

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	17,057,557 - 17,204,162 (+)	NCBI
SpeTri2.0	NW_004936541	1,989,092 - 2,137,006 (-)	NCBI

Sequence:

show sequence

GCGCGCGCCGCGGGGGCGGGTTCTGTCGAGCACCCAGCTGCAGCCGCGGAGCCGGACGTGTCCG
CGAAGATGGCGGGCCGGAGCATGCAAGCTGCAAGATGTCCTACAGATGAATTGTCATTAACCAA
CTGTGCAGTTGTGAATGAGAAGGATTTCCAGTCTGGCCAGCATGTGATTGTGAGGACCTCTCCC
AATCACAGGTACACATTTACACTGAGGACCCATCCATCAGTGGTGCCAGGGAGCATTGCATTCA
GCCTACCTCAGCGAAAATGGGCTGGACTTTCTATTGGGCAAGAAATAGAAGTCTCCTTGTATAC
ATTTGATAAAGCTAAACAGTGTATTGGCACAATGACCATCGAGATTGATTTCCTGCAGAAAAAA
AACATCGACTCCAACCCTTATGATACCGACAAGATGGCAGCAGAATTTATTCAACAGTTCAACA
ACCAGGCCTTCTCAGTGGGGCAGCAGCTTGTGTTTAGCTTCAATGAAAAGCTTTTTGGTTTACT
GGTGAAGGATATTGAAGCCATGGATCCTAGCATCTTGAAGGGAGAGCCTGCAACTGGTAAAAAA
CAGAAGATTGAAGTAGGACTGGTTGTTGGAAATAGTCAAGTTGCATTTGAAAAAGCAGAAAATT
CATCACTCAATCTTATTGGCAAATCTAAAACCAAGGAAAATCGCCAATCTATCATAAATCCTGA
CTGGAACTTTGAGAAAATGGGAATAGGAGGTCTGGACAAAGAATTTTCAGACATTTTTCGACGA
GCATTTGCTTCGCGCGTATTTCCTCCAGAGATTGTGGAGCAGATGGGTTGTAAACATGTTAAAG
GCATTCTGTTATACGGGCCCCCAGGTTGTGGTAAGACTCTCTTGGCTCGACAGATTGGCAAGAT
GTTGAATGCAAGAGAGCCCAAAGTGGTCAATGGGCCAGAAATCCTCAACAAATATGTGGGAGAA
TCAGAGGCTAACATTCGCAAACTTTTTGCTGATGCTGAAGAGGAGCAAAGGAGGCTTGGTGCTA
ACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCAT
GGCTGGTAGCACTGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATTGACGGGGTA
GAACAGCTGAACAATATCCTTGTCATTGGAATGACCAATAGACCAGATCTGATAGATGAGGCTC
TCCTTCGACCTGGAAGACTGGAAGTTAAAATGGAGATAGGCTTGCCAGATGAGAAAGGTCGACT
ACAGATCCTTCACATCCACACAGCAAGAATGAGAGGACATCAGTTACTCTCTGCTGATGTAGAC
ATTAAAGAATTAGCTGTGGAGACCAAGAATTTCAGTGGTGCTGAATTGGAGGGTCTGGTGCGAG
CAGCACAATCCACTGCTATGAACAGACACATAAAGGCAAGTACTAAAGTGGAAGTGGACATGGA
GAAAGCAGAGAGTCTGCAGGTGACAAGAGGAGACTTCCTTGCTTCTTTGGAGAATGATATCAAA
CCAGCATTTGGCACAAATCAAGAGGATTATGCAAGTTATATTATGAATGGAATCATCAAATGGG
GTGACCCAGTTACTCGAGTTCTGGATGATGGGGAGCTGCTGGTCCAGCAGACTAAAAACAGTGA
CCGCACACCACTGGTTAGCGTCCTTTTAGAAGGCCCTCCTCATAGTGGGAAGACTGCATTAGCT
GCAAAGATCGCAGAGGAATCCAACTTCCCCTTCATCAAGATCTGTTCTCCTGATAAGATGATTG
GCTTTTCTGAGACAGCCAAGTGTCAGGCCATGAAGAAGATCTTTGATGATGCATACAAATCCCA
ACTCAGTTGTGTGGTTGTGGATGACATTGAGAGATTGCTAGATTATGTCCCCATTGGCCCCCGA
TTTTCTAATCTGGTATTACAGGCTCTTCTTGTGTTACTGAAAAAGGCACCTCCTCAGGGCCGAA
AGCTTCTTATCATTGGGACCACTAGCCGCAAAGATGTCCTTCTGGAAATGGAAATGCTTAATGC
CTTCAGCACCACCATCCACGTGCCCAACATTGCTACTGGAGAGCAGCTACTGGAAGCTTTGGAG
CTTTTGGGCAATTTTAAAGATAAGGAACGCACCACAATTGCACAACAAGTCAAAGGGAAGAAAG
TCTGGATAGGAATCAAGAAGCTACTGATGTTGATCGAGATGTCCTTGCAGATGGATCCTGAATA
CCGCGTGAGAAAATTCTTGGCCCTCTTGAGAGAAGAAGGAGCTAGCCCTCTTGACTTTGATTGA
AAATGGACTCTTTGCAACACACGGTGACCAAGGGACATGACCAAGGTGAAGATGGCCTGGGATC
TTCACTCATCTTGCTGGAGATACTGGACTAAGTGAAACATTCTCTACCTTCAACCTGCACTCAC
TGCATGATTAGTGCAAAAACACTCCCCTCTTCATGCTTATTGAGATATTCTGGTGTTTTTGTGG
AAAGTGTAAATCTGCTTAAGATGCTGTGCTTACCTTCCCCCAGCTGAGGTGGTTCCTTCTTACT
CAGAGTCTGTGTGGGAGCCATACTGTATTTGTGCACACTACACATTTGAAGCTCCGTACCACCT
GAAAACTATTAGTAAAGGTAACAAATGTTGCAGGACAACACTTGACCTTGTTAGAAGGTCGACT
TTCTGCATGCAAAACAAGAGCAGTGAGCAGAGGCGTGGGTTCTCTGGGACTCTATACAACTCCC
CTACGCTTACACTAACGGTAATTGGTATTTGGTTAAAGGTATTCCCATGGAACTGGTTATTATT
GCCTGAAGAAACAGGGCTTTGAATATCTAAGATGCTGTTCTTAATCATTTTCAGGGATATTTTC
AAGTTGCAATCAGGAGATCTTTCTTATTAGAAAGTCCAATTGTCACTGTGGTGGCTGTGACATC
CCCTTGATATAATTAATTTGCTCTGTGGTAAGATATATGCTAATTATTACCACTCAGAAGATGT
TGTTAAAAACTTATGAAAGATATGTATGGAAAAATGTACACCCCTAAACAGAAAGGAATTATTA
AAATAAAGTAATTTACAAACCTCTCAGCACTAATTAGTGTCCAACTCTAAGTGGGTCAATTCCT
TAGGATAATATAAAAGGCTTATTAGTATCACCACTTTTCTCTTTTCCTTAGCCTAATGACTTAC
TTAGAATTTGTCCTTCCTTTATTTTAAATTATCTTTACTATCTAGCATGCAAATAAAACACTAT
TATCCAGAGAAATAAGCCACGTCCTCACCCTCTCCCTTCAGCCCTTGAACACCCGTCTGATCCT
TTCCCTCATCCTCTACACGCTTCTTCCAAAGGGAAGGAGAACTCGTTGAGTCCTTTTGAGGGTG
ACTTGTCTTATCACTGAGTTGGAAGGAATTTAATTAGGTTATCACATATGGTGATGAGACATAT
GGAGCACGACTCTCCCACTGCTGCTTAAAACACGAGGACAGGTGGTCAGAAGCCACCACTTCTG
ACCAGTTTGTTGCCACAGTGGCACTTGGGTGTGGCAAGTAGAAGGCCAATCATCTCCAAATCTT
GTTCTCTGTATACTATTGTTTTGAGTCTTCATCCCTGGCTCATTTTGTGGCTTTTATGACAGTG
GATTTATTGTGGAATTTTGTGATCCCTGGTGGCCCATGTCCTGAATCCCCAACCTGTTTGCCAT
CTTGCCTCTTCCCTCCTCCCGAGAAGCAGCACACATTGTATTAACTTATGTCTCTTGTTAAATA
AGGATAATGTCTTTGTGTTCTGTCCAAAACTATATTGAAAAAGATAAATATTATATTGTTTAAT
GCAAATGAAGGAATGCAATAAAGAGTAAATATACTTGAAAA

hide sequence

RefSeq Acc Id:

XM_021728362 ⟹ XP_021584037

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405602	17,057,557 - 17,205,506 (+)	NCBI
SpeTri2.0	NW_004936541	1,990,620 - 2,137,006 (-)	NCBI

Sequence:

show sequence

GCGCGCGCCGCGGGGGCGGGTTCTGTCGAGCACCCAGCTGCAGCCGCGGAGCCGGACGTGTCCG
CGAAGATGGCGGGCCGGAGCATGCAAGCTGCAAGATGTCCTACAGATGAATTGTCATTAACCAA
CTGTGCAGTTGTGAATGAGAAGGATTTCCAGTCTGGCCAGCATGTGATTGTGAGGACCTCTCCC
AATCACAGGTACACATTTACACTGAGGACCCATCCATCAGTGGTGCCAGGGAGCATTGCATTCA
GCCTACCTCAGCGAAAATGGGCTGGACTTTCTATTGGGCAAGAAATAGAAGTCTCCTTGTATAC
ATTTGATAAAGCTAAACAGTGTATTGGCACAATGACCATCGAGATTGATTTCCTGCAGAAAAAA
AACATCGACTCCAACCCTTATGATACCGACAAGATGGCAGCAGAATTTATTCAACAGTTCAACA
ACCAGGCCTTCTCAGTGGGGCAGCAGCTTGTGTTTAGCTTCAATGAAAAGCTTTTTGGTTTACT
GGTGAAGGATATTGAAGCCATGGATCCTAGCATCTTGAAGGGAGAGCCTGCAACTGGTAAAAAA
CAGAAGATTGAAGTAGGACTGGTTGTTGGAAATAGTCAAGTTGCATTTGAAAAAGCAGAAAATT
CATCACTCAATCTTATTGGCAAATCTAAAACCAAGGAAAATCGCCAATCTATCATAAATCCTGA
CTGGAACTTTGAGAAAATGGGAATAGGAGGTCTGGACAAAGAATTTTCAGACATTTTTCGACGA
GCATTTGCTTCGCGCGTATTTCCTCCAGAGATTGTGGAGCAGATGGGTTGTAAACATGTTAAAG
GCATTCTGTTATACGGGCCCCCAGGTTGTGGTAAGACTCTCTTGGCTCGACAGATTGGCAAGAT
GTTGAATGCAAGAGAGCCCAAAGTGGTCAATGGGCCAGAAATCCTCAACAAATATGTGGGAGAA
TCAGAGGCTAACATTCGCAAACTTTTTGCTGATGCTGAAGAGGAGCAAAGGAGGCTTGGTGCTA
ACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGGAGCAT
GGCTGGTAGCACTGGAGTTCATGACACTGTCGTCAACCAGTTGCTGTCCAAAATTGACGGGGTA
GAACAGCTGAACAATATCCTTGTCATTGGAATGACCAATAGACCAGATCTGATAGATGAGGCTC
TCCTTCGACCTGGAAGACTGGAAGTTAAAATGGAGATAGGCTTGCCAGATGAGAAAGGTCGACT
ACAGATCCTTCACATCCACACAGCAAGAATGAGAGGACATCAGTTACTCTCTGCTGATGTAGAC
ATTAAAGAATTAGCTGTGGAGACCAAGAATTTCAGTGGTGCTGAATTGGAGGGTCTGGTGCGAG
CAGCACAATCCACTGCTATGAACAGACACATAAAGGCAAGTACTAAAGTGGAAGTGGACATGGA
GAAAGCAGAGAGTCTGCAGGTGACAAGAGGAGACTTCCTTGCTTCTTTGGAGAATGATATCAAA
CCAGCATTTGGCACAAATCAAGAGGATTATGCAAGTTATATTATGAATGGAATCATCAAATGGG
GTGACCCAGTTACTCGAGTTCTGGATGATGGGGAGCTGCTGGTCCAGCAGACTAAAAACAGTGA
CCGCACACCACTGGTTAGCGTCCTTTTAGAAGGCCCTCCTCATAGTGGGAAGACTGCATTAGCT
GCAAAGATCGCAGAGGAATCCAACTTCCCCTTCATCAAGATCTGTTCTCCTGATAAGATGATTG
GCTTTTCTGAGACAGCCAAGTGTCAGGCCATGAAGAAGATCTTTGATGATGCATACAAATCCCA
ACTCAGTTGTGTGGTTGTGGATGACATTGAGAGATTGCTAGATTATGTCCCCATTGGCCCCCGA
TTTTCTAATCTGGTATTACAGGCTCTTCTTGTGTTACTGAAAAAGGCACCTCCTCAGGGCCGAA
AGCTTCTTATCATTGGGACCACTAGCCGCAAAGATGTCCTTCTGGAAATGGAAATGCTTAATGC
CTTCAGCACCACCATCCACGTGCCCAACATTGCTACTGGAGAGCAGCTACTGGAAGCTTTGGAG
CTTTTGGGCAATTTTAAAGATAAGGAACGCACCACAATTGCACAACAAGTCAAAGGGAAGAAAG
TCTGGATAGGAATCAAGAAGCTACTGATGTTGATCGAGATGTCCTTGCAGATGGATCCTGAATA
CCGCGTGAGAAAATTCTTGGCCCTCTTGAGAGAAGAAGGAGCGTATGAGAGACCAAGCAAGGAG
GTTGGTTGTTCTGTTGGTTTGCTCTCCCTGTCCTGCTTCGCAAAACTACCTTGTCACAATGCAG
GGAAAAACTTGATGTAGCCCTCTTGACTTTGATTGAAAATGGACTCTTTGCAACACACGGTGAC
CAAGGGACATGACCAAGGTGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_005328208	(Get FASTA)	NCBI Sequence Viewer
	XP_021584037	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSTOP00000017448.2
GenBank Protein	KAG3268737	(Get FASTA)	NCBI Sequence Viewer
	KAG3268738	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	XP_005328208 ⟸ XM_005328151
- Peptide Label:	isoform X2
- UniProtKB:	I3MZA2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTFTLRTHPSVVPGSIAFSL PQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNNQ AFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATGKKQKIEVGLVVGNSQVAFEKAENSS LNLIGKSKTKENRQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGI LLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANS GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALL RPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAA QSTAMNRHIKASTKVEVDMEKAESLQVTRGDFLASLENDIKPAFGTNQEDYASYIMNGIIKWGD PVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGF SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL LIIGTTSRKDVLLEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVW IGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGASPLDFD hide sequence

RefSeq Acc Id:

XP_021584037 ⟸ XM_021728362

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAGRSMQAARCPTDELSLTNCAVVNEKDFQSGQHVIVRTSPNHRYTFTLRTHPSVVPGSIAFSL
PQRKWAGLSIGQEIEVSLYTFDKAKQCIGTMTIEIDFLQKKNIDSNPYDTDKMAAEFIQQFNNQ
AFSVGQQLVFSFNEKLFGLLVKDIEAMDPSILKGEPATGKKQKIEVGLVVGNSQVAFEKAENSS
LNLIGKSKTKENRQSIINPDWNFEKMGIGGLDKEFSDIFRRAFASRVFPPEIVEQMGCKHVKGI
LLYGPPGCGKTLLARQIGKMLNAREPKVVNGPEILNKYVGESEANIRKLFADAEEEQRRLGANS
GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKIDGVEQLNNILVIGMTNRPDLIDEALL
RPGRLEVKMEIGLPDEKGRLQILHIHTARMRGHQLLSADVDIKELAVETKNFSGAELEGLVRAA
QSTAMNRHIKASTKVEVDMEKAESLQVTRGDFLASLENDIKPAFGTNQEDYASYIMNGIIKWGD
PVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGF
SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKL
LIIGTTSRKDVLLEMEMLNAFSTTIHVPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVW
IGIKKLLMLIEMSLQMDPEYRVRKFLALLREEGAYERPSKEVGCSVGLLSLSCFAKLPCHNAGK
NLM

hide sequence

Ensembl Acc Id:

ENSSTOP00000017448 ⟸ ENSSTOT00000028903

Protein Domains

AAA+ ATPase CDC48 CDC48 N-terminal subdomain

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSTOG00000020250	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSSTOT00000028903.2	UniProtKB/TrEMBL
Gene3D-CATH	1.10.8.60	UniProtKB/TrEMBL
	2.40.40.20	UniProtKB/TrEMBL
	3.10.330.10	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	AAA+_ATPase	UniProtKB/TrEMBL
	AAA_lid_3	UniProtKB/TrEMBL
	Asp_de-COase-like_dom_sf	UniProtKB/TrEMBL
	ATPase_AAA_core	UniProtKB/TrEMBL
	ATPase_AAA_CS	UniProtKB/TrEMBL
	Cdc48_dom2	UniProtKB/TrEMBL
	CDC48_domain_2-like_sf	UniProtKB/TrEMBL
	CDC4_N-term_subdom	UniProtKB/TrEMBL
	NSF_ATPase_lid	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Vesicle-fus_ATPase	UniProtKB/TrEMBL
NCBI Gene	Nsf	ENTREZGENE
PANTHER	PTHR23078	UniProtKB/TrEMBL
	VESICLE-FUSING ATPASE	UniProtKB/TrEMBL
Pfam	AAA	UniProtKB/TrEMBL
	AAA_lid_3	UniProtKB/TrEMBL
	CDC48_2	UniProtKB/TrEMBL
	CDC48_N	UniProtKB/TrEMBL
	NSF_ATPase_lid	UniProtKB/TrEMBL
PRINTS	ENDOLAPTASE	UniProtKB/TrEMBL
PROSITE	AAA	UniProtKB/TrEMBL
SMART	AAA	UniProtKB/TrEMBL
	CDC48_2	UniProtKB/TrEMBL
	CDC48_N	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50692	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
	SSF54585	UniProtKB/TrEMBL
UniProt	I3MZA2	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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