PLN (phospholamban) - Rat Genome Database

Name: PLN
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: PLN (phospholamban) Canis lupus familiaris

Analyze

Symbol:

PLN

Name:

phospholamban

RGD ID:

12247034

Description:

ENCODES a protein that exhibits ATPase inhibitor activity; identical protein binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN negative regulation of ATP-dependent activity; negative regulation of calcium ion import into sarcoplasmic reticulum; negative regulation of calcium ion transmembrane transporter activity; PARTICIPATES IN acebutolol pharmacodynamics pathway; adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway; amiodarone pharmacodynamics pathway; ASSOCIATED WITH atrial fibrillation (ortholog); autistic disorder (ortholog); cardiac arrest (ortholog); FOUND IN endoplasmic reticulum membrane (ortholog); protein-containing complex (ortholog); sarcoplasmic reticulum (ortholog); INTERACTS WITH allopurinol

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cardiac phospholamban; PLB

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PLN (phospholamban)	HGNC	EggNOG, Ensembl, Inparanoid, NCBI, OMA, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pln (phospholamban)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pln (phospholamban)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pln (phospholamban)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PLN (phospholamban)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pln (phospholamban)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PLN (phospholamban)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PLN (phospholamban)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pln (phospholamban)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	58,579,095 - 58,590,541 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	58,579,145 - 58,590,535 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	59,381,980 - 59,393,371 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	58,763,549 - 58,775,010 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	58,763,595 - 58,775,006 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	58,664,392 - 58,675,778 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	58,505,736 - 58,517,122 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	59,137,737 - 59,149,128 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

autistic disorder (ISO)

cardiac arrest (ISO)

cardiomyopathy (ISO)

centronuclear myopathy (ISO)

congenital disorder of glycosylation Iaa (ISO)

congestive heart failure (ISO)

Diabetes Complications (ISO)

Diabetic Cardiomyopathies (ISO)

dilated cardiomyopathy (ISO)

dilated cardiomyopathy 1P (ISO)

Ebstein anomaly (ISO)

epilepsy (ISO)

heart disease (ISO)

hypertrophic cardiomyopathy (ISO)

hypertrophic cardiomyopathy 18 (ISO)

intellectual disability (ISO)

intrinsic cardiomyopathy (ISO)

lissencephaly 10 (ISO)

microcephaly (ISO)

myocardial infarction (ISO)

Myocardial Reperfusion Injury (ISO)

myocardial stunning (ISO)

Prehypertension (ISO)

Sudden Cardiac Death (ISO)

Tremor (ISO)

type 2 diabetes mellitus (ISO)

Ventricular Dysfunction, Left (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

allopurinol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

acrosome assembly (IEA,ISS)

adenylate cyclase-activating adrenergic receptor signaling pathway involved in heart process (IEA,ISO)

calcium ion transport (ISO)

cardiac muscle tissue development (IEA,ISO)

circadian sleep/wake cycle, sleep (IEA,ISS)

intracellular calcium ion homeostasis (IEA,ISO,ISS)

locomotor rhythm (IEA,ISS)

muscle cell cellular homeostasis (IEA,ISO)

negative regulation of ATP-dependent activity (IDA)

negative regulation of ATPase-coupled calcium transmembrane transporter activity (ISO,ISS)

negative regulation of calcium ion import into sarcoplasmic reticulum (IBA,IDA,IEA)

negative regulation of calcium ion transmembrane transporter activity (IDA)

negative regulation of calcium ion transport (IEA)

negative regulation of heart contraction (IEA,ISO)

negative regulation of heart rate (IBA,IEA)

Notch signaling pathway (IEA,ISO)

regulation of ATPase-coupled calcium transmembrane transporter activity (ISO)

regulation of calcium ion import (IEA,ISO)

regulation of calcium ion transport (IEA,ISS)

regulation of cardiac muscle cell contraction (IEA,ISO)

regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion (IEA,ISO)

regulation of heart contraction (IEA,ISO)

regulation of relaxation of muscle (IEA,ISO)

regulation of release of sequestered calcium ion into cytosol by sarcoplasmic reticulum (IEA,ISO)

regulation of ryanodine-sensitive calcium-release channel activity (ISO)

regulation of the force of heart contraction (IEA,ISO)

regulation of the force of heart contraction by cardiac conduction (IEA,ISO)

response to insulin (ISO)

response to testosterone (ISO)

response to zinc ion (ISO)

spermatogenesis (IEA)

visual learning (IEA,ISS)

Cellular Component

calcium ion-transporting ATPase complex (IEA)

endoplasmic reticulum membrane (IEA,ISO,ISS)

membrane (IBA,IEA)

mitochondrial membrane (IEA)

mitochondrion (IEA)

protein-containing complex (ISO)

sarcoplasmic reticulum (IBA,IEA,ISO)

sarcoplasmic reticulum membrane (IEA,ISS)

vesicle (ISO)

Molecular Function

ATPase inhibitor activity (IBA,IDA,IEA,ISO)

identical protein binding (ISO)

protein binding (ISO)

protein homodimerization activity (IEA,ISS)

Molecular Pathway Annotations Click to see Annotation Detail View

acebutolol pharmacodynamics pathway (ISO)

adrenergic beta receptor agonist and beta-blocker pharmacodynamics pathway (ISO)

amiodarone pharmacodynamics pathway (ISO)

amlodipine pharmacodynamics pathway (ISO)

atenolol pharmacodynamics pathway (ISO)

betaxolol pharmacodynamics pathway (ISO)

bisoprolol pharmacodynamics pathway (ISO)

bupranolol drug pathway (ISO)

bupranolol pharmacodynamics pathway (ISO)

calcium/calmodulin dependent kinase 2 signaling pathway (ISO)

carvedilol pharmacodynamics pathway (ISO)

diltiazem pharmacodynamics pathway (ISO)

disopyramide pharmacodynamics pathway (ISO)

dobutamine pharmacodynamics pathway (ISO)

esmolol pharmacodynamics pathway (ISO)

flecainde pharmacodynamics pathway (ISO)

fosphenytoin pharmacodynamics pathway (ISO)

ibutilide pharmacodynamics pathway (ISO)

isoprenaline pharmacodynamics pathway (ISO)

isradipine pharmacodynamics pathway (ISO)

levobunolol pharmacodynamics pathway (ISO)

lidocaine pharmacodynamics pathway (ISO)

metoprolol pharmacodynamics pathway (ISO)

mexiletine pharmacodynamics pathway (ISO)

nadolol pharmacodynamics pathway (ISO)

nebivolol pharmacodynamics pathway (ISO)

nifedipine pharmacodynamics pathway (ISO)

nimodipine pharmacodynamics pathway (ISO)

nisoldipine pharmacodynamics pathway (ISO)

nitrendipine pharmacodynamics pathway (ISO)

penbutolol pharmacodynamics pathway (ISO)

phenytoin pharmacodynamics pathway (ISO)

pindolol pharmacodynamics pathway (ISO)

procainamide pharmacodynamics pathway (ISO)

propranolol pharmacodynamics pathway (ISO)

quinidine pharmacodynamics pathway (ISO)

sotalol pharmacodynamics pathway (ISO)

timolol pharmacodynamics pathway (ISO)

verapamil pharmacodynamics pathway (ISO)

References

Additional References at PubMed

PMID:2544595	PMID:3628007	PMID:3753485	PMID:3759968	PMID:3793929	PMID:8349590	PMID:15233990	PMID:15644311	PMID:18287099	PMID:19053265	PMID:19948724	PMID:20622261
PMID:21542669	PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PLN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	58,579,095 - 58,590,541 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	58,579,145 - 58,590,535 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	59,381,980 - 59,393,371 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	58,763,549 - 58,775,010 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	58,763,595 - 58,775,006 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	58,664,392 - 58,675,778 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	58,505,736 - 58,517,122 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	59,137,737 - 59,149,128 (+)	NCBI		UU_Cfam_GSD_1.0

PLN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	118,548,296 - 118,561,716 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	118,548,296 - 118,561,716 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	118,869,459 - 118,882,879 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	118,976,165 - 118,988,280 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	118,976,164 - 118,988,279	NCBI
Celera	6	119,612,768 - 119,624,905 (+)	NCBI		Celera
Cytogenetic Map	6	q22.31	NCBI
HuRef	6	116,451,106 - 116,463,257 (+)	NCBI		HuRef
CHM1_1	6	119,133,487 - 119,145,628 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	119,733,450 - 119,746,868 (+)	NCBI		T2T-CHM13v2.0

Pln
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	10	53,213,782 - 53,222,095 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	10	53,213,763 - 53,222,083 (+)	Ensembl		GRCm39 Ensembl
GRCm38	10	53,337,686 - 53,345,999 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	10	53,337,667 - 53,345,987 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	10	53,057,492 - 53,065,805 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	10	53,026,122 - 53,034,396 (+)	NCBI		MGSCv36	mm8
Celera	10	54,164,488 - 54,172,801 (+)	NCBI		Celera
Cytogenetic Map	10	B3	NCBI
cM Map	10	27.11	NCBI

Pln
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	20	33,166,512 - 33,182,241 (+)	NCBI		GRCr8
mRatBN7.2	20	32,629,537 - 32,639,559 (+)	NCBI	mRatBN7.2	mRatBN7.2
UTH_Rnor_SHR_Utx	20	33,643,487 - 33,653,241 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	20	33,034,203 - 33,043,957 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	20	33,768,368 - 33,778,120 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	20	34,633,157 - 34,642,904 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	20	34,633,157 - 34,642,904 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	20	36,390,879 - 36,400,626 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	20	32,000,371 - 32,008,559 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	20	32,014,170 - 32,022,359 (+)	NCBI
Celera	20	34,009,102 - 34,018,849 (+)	NCBI		Celera
Cytogenetic Map	20	q11	NCBI

Pln
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955436	1,439,098 - 1,447,070 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955436	1,439,098 - 1,447,070 (+)	NCBI	ChiLan1.0	ChiLan1.0

PLN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	138,552,963 - 138,575,943 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	136,456,523 - 136,469,893 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	116,357,335 - 116,370,382 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	120,498,943 - 120,511,969 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	120,509,510 - 120,509,668 (+)	Ensembl	panpan1.1		panPan2

Pln
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	109,336,904 - 109,346,907 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936658	1,443,795 - 1,453,839 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936658	1,443,626 - 1,453,770 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PLN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	43,449,354 - 43,458,925 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	1	43,449,354 - 43,458,925 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	48,678,936 - 48,688,510 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PLN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	13	55,316,962 - 55,332,502 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	13	55,318,326 - 55,318,481 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	27,627,687 - 27,641,160 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pln
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624798	11,522,269 - 11,528,775 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624798	11,522,245 - 11,528,741 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PLN
61 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001003332	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_014116918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038653439	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF037348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AH013852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY514751	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y00399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000087967 ⟹ ENSCAFP00000055407

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	1	58,579,145 - 58,590,535 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845012486 ⟹ ENSCAFP00845009755

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	58,763,595 - 58,775,006 (+)	Ensembl

Ensembl Acc Id:

ENSCAFT00845012506 ⟹ ENSCAFP00845009770

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	1	58,763,614 - 58,775,004 (+)	Ensembl

RefSeq Acc Id:

NM_001003332 ⟹ NP_001003332

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	1	58,579,145 - 58,590,535 (+)	NCBI
Dog10K_Boxer_Tasha	1	59,381,980 - 59,393,371 (+)	NCBI
ROS_Cfam_1.0	1	58,763,614 - 58,775,004 (+)	NCBI
UMICH_Zoey_3.1	1	58,664,392 - 58,675,778 (+)	NCBI
UNSW_CanFamBas_1.0	1	58,505,736 - 58,517,122 (+)	NCBI
UU_Cfam_GSD_1.0	1	59,137,737 - 59,149,128 (+)	NCBI

Sequence:

show sequence

AGTCAGAAAACTTTCTAACTAAACACCGATAAGACTTCATACAACTCACAATACTTTATATTGT
AATCATCACAAGAGCCAAGGCTACCTAAAAGAAGAGAGTGGTTGAGCTCACATTTGGCCGCCAG
CTTTTTACCTTTCTCTTCACCATTTAAAACTTGAGACTTCCTGCTTTCCTGGGGTCATGGATAA
AGTCCAATACCTCACTCGCTCTGCTATTAGAAGAGCTTCAACCATTGAAATGCCTCAACAAGCA
CGTCAAAATCTTCAGAACCTATTTATAAATTTCTGTCTCATTTTAATATGTCTCTTGTTGATCT
GCATCATTGTGATGCTTCTCTGAAGTTCTGCTGCAATCTCCAGTGATGCAACTTGTCACCATCA
ACTTAATATCTGCCATCCCATGAAGAGGGGAAAATAATACTATATAACAGACCACTTCTAAGTA
GAAGATTTTACTTGTGAAAAGGTCAAGATTCAGAACAAAAGAAATTATTAACAAATGTCTTCAT
CTGTGGGATTTTGTAAACATGAAAAGAGCTTTATTTTCAAAAATTAACTTCAAAATGACTATAG
GTGCGCATAATGTAATTGCTGAATTCCTCAACAAAGCTTGTAAAAGTTTCTATGCCAAATTTTT
TCTGAGGGTAAAGTAGGAGTTTAGTTTTAAAACTGCTCTGCTAACCAGTTCACTTCACATATAA
AGCATTAGCTTCACTATTTGAGCTAAATATTTATATTGTACTGTAAATGCCTATGTAATGTTTA
TTAAGATTTTTCAAGTCTCCGCTAAGTACGAAAATAATCATCCAAATGAAGTCATCATTTGAAA
TAGCCTACTGATTCCTTACATCTGTTATCTTTATAATTATCATTCAGAAGTCTTTCTAGTAATA
GTAACTCTCATAACCTACATTTTGAAATATAAATTGTATTCTTTCTCTGTACAACACTAACATC
TTTTTTTAAGTTTATGAGAATCAAGTAGGAAAAAATAAGACCATACTCTTACATAAATAAAATT
TCTCTTAACTTTTTCAAAGAATTACAGAGTTGTAGTGTATGAAGGCAAACCATAAATCTGCTCT
CTGTAGTACATTATGATCAAGAGACAAAAACAATTGGTTAATTTAACAGCTGAGAGTATGATTA
GCCAATTACTAATACACTAACAGAACAGAGTCTAACATAAGGCACTGTAGTTGATCACCTAAGT
ACATAACTTACCACATTATGTCTTTGAAATCATGAAATCTTAAGACTTTAGAATGATTTTATAG
ATTGTCTTCTATTCTTAACCTCATACTTAATATAGGCAAGGAAAAGAATTTTAAAAATAAAAGG
AGAAATACTCTTTCAAGCATTAAAAAAATAAAATTTGGGGTTCCCCAATATTAATTCCTTGATC
ATATTTTGACATGAACTCTTTGTCCTACTGTTTATAACAAGATATAGCTATTTTCCTTAATCTA
TCAACCAAATGTTCAATACCTATTTGGTAGGCAATCCTACCATGCTAAATTATAAACCCAGTAA
TGTCAATCTACAATTTTTTCCTTAAATACATTTTCAATTTCCCCTCTGATCATTTAAAAATATC
TTCTAACTCATAATAGAAGTAAAAATTGGTATTGGAAAATATATTCACCAAAATTTGGTAATTT
AACTTGATTCTGTTTAAAATTAGGTTTAAAGTGGTTTATACCTATACTGCATAATCCAGTAATT
TTAACTTCAAGACATATTACTAATATAGCAACTACTAAGAGAATAAAGAACATATTATTTACTG
TATTATTTGTGGAAATGTGGCTACTAAAAGAATTTGAAAAGTCAGTACTGATCTTGGTTTATAT
ATATATAGTACAAGTGCTGCTAACAGATTAGTAAAGGAGACACTGCTTTTGGATTTTTTCTGGG
TACCTGACAGGTAATGGGGATGGGCAGGGGAATAATTTTGGTTCACAGATACCTGAGGAACAGA
GGGAAAAGAATCTCATACCAACAGGGAGATTTCTTCAGCAAAGCCTCATCTAATACCAAATAGA
ACACTTATAGATAGTAAGCAATATATTCAACATTACCAGTTATTAGTAATTATTTGTGAAAGAA
GTAACCAAGTTCTATAGCTGCACTGATGTTAATAAGTGGGAAATCTGAAATGCTAAAATTCTAT
TCCTTTCATTTTAATGTTCATTATTACTTATATCAACACCAAACTATAAAATGTGAAGCTATGG
GTTATTTCCCTAAGTAAAATAAAAATAAGTTTTTGTTTTTCATTCTGCCTTCAATAGAAATTAA
AACCTTTTTCTTGAAGATTACGGAATACTAGAACTCAGATTATAATGTAGAACAAAAACCTAAC
CTTTAAACGGAACTTATTTATTCTGTTTTCATGATATGTAAAGAATAAGATATAATAAGACAAT
TTATTTAAAATTTTTAAATACCAATATTCTTTCTACTTGTAGAATAAATTCTACTAATCTTAAT
TTACAGGGTACTAAAATGAACTCATTTTTAAATGTTTAATGTTGCCTTTTATATACTTTAGTTG
GTTCAAAATGTTTATTTAATGCAAATCACCTATATTAAAAAAAGAACCTTCTTG

hide sequence

RefSeq Acc Id:

XM_038653439 ⟹ XP_038509367

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	1	58,763,549 - 58,775,010 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001003332	(Get FASTA)	NCBI Sequence Viewer
	XP_038509367	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAT44582	(Get FASTA)	NCBI Sequence Viewer
	AAT48602	(Get FASTA)	NCBI Sequence Viewer
	CAA68461	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000055407.1
	ENSCAFP00000073568.1
	ENSCAFP00030020549.1
	ENSCAFP00040006659.1
	ENSCAFP00805017406
	ENSCAFP00805017416
	ENSCAFP00845009755
	ENSCAFP00845009755.1
	ENSCAFP00845009770
	ENSCAFP00845009770.1
GenBank Protein	P61012	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001003332 ⟸ NM_001003332
- UniProtKB:	Q56UH4 (UniProtKB/Swiss-Prot), P07473 (UniProtKB/Swiss-Prot), P61012 (UniProtKB/Swiss-Prot), A0A8C0LDT9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDKVQYLTRSAIRRASTIEMPQQARQNLQNLFINFCLILICLLLICIIVMLL hide sequence

Ensembl Acc Id:

ENSCAFP00000055407 ⟸ ENSCAFT00000087967

RefSeq Acc Id:	XP_038509367 ⟸ XM_038653439
- Peptide Label:	isoform X1
- UniProtKB:	P61012 (UniProtKB/Swiss-Prot), Q56UH4 (UniProtKB/Swiss-Prot), P07473 (UniProtKB/Swiss-Prot), A0A8C0LDT9 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845009770 ⟸ ENSCAFT00845012506

Ensembl Acc Id:

ENSCAFP00845009755 ⟸ ENSCAFT00845012486

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000049711	Ensembl, UniProtKB/Swiss-Prot
	ENSCAFG00030012743	UniProtKB/Swiss-Prot
	ENSCAFG00040003994	UniProtKB/Swiss-Prot
	ENSCAFG00805012025	UniProtKB/Swiss-Prot
	ENSCAFG00845007035	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSCAFT00000087967.2	UniProtKB/Swiss-Prot
	ENSCAFT00000094839.1	UniProtKB/Swiss-Prot
	ENSCAFT00030023576.1	UniProtKB/Swiss-Prot
	ENSCAFT00040007630.1	UniProtKB/Swiss-Prot
	ENSCAFT00805022087	UniProtKB/Swiss-Prot
	ENSCAFT00805022098	UniProtKB/Swiss-Prot
	ENSCAFT00845012486	ENTREZGENE
	ENSCAFT00845012486.1	UniProtKB/Swiss-Prot
	ENSCAFT00845012506	ENTREZGENE
	ENSCAFT00845012506.1	UniProtKB/Swiss-Prot
Gene3D-CATH	Phospholamban	UniProtKB/Swiss-Prot
InterPro	PLB	UniProtKB/Swiss-Prot
KEGG Report	cfa:414755	UniProtKB/Swiss-Prot
NCBI Gene	PLN	ENTREZGENE
PANTHER	CARDIAC PHOSPHOLAMBAN	UniProtKB/Swiss-Prot
	PTHR21194	UniProtKB/Swiss-Prot
Pfam	Phospholamban	UniProtKB/Swiss-Prot
PIRSF	PLB	UniProtKB/Swiss-Prot
UniProt	A0A8C0LDT9	ENTREZGENE
	P07473	ENTREZGENE
	P61012	ENTREZGENE, UniProtKB/Swiss-Prot
	Q56UH4	ENTREZGENE
UniProt Secondary	P07473	UniProtKB/Swiss-Prot
	Q56UH4	UniProtKB/Swiss-Prot
VGNC ID	VGNC:44700	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Annotations - SMPDB

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Imported Disease Annotations - OMIM

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Imported Annotations - SMPDB