NCAM1 (neural cell adhesion molecule 1) - Rat Genome Database

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Gene: NCAM1 (neural cell adhesion molecule 1) Canis lupus familiaris
Analyze
Symbol: NCAM1
Name: neural cell adhesion molecule 1
RGD ID: 12210984
Description: ENCODES a protein that exhibits LRR domain binding (ortholog); phosphatase binding (ortholog); INVOLVED IN animal organ regeneration (ortholog); axonal fasciculation (ortholog); behavioral response to ethanol (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); adenoma (ortholog); alcohol dependence (ortholog); FOUND IN axon (ortholog); cell-cell junction (ortholog); cytoplasm (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adhesion molecule; CD56 140 kDa isoform
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,895,587 - 20,192,334 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,895,613 - 20,191,995 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha519,817,368 - 20,113,554 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0519,916,497 - 20,213,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,916,523 - 20,212,993 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,978,946 - 20,275,227 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,880,186 - 20,176,568 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,928,019 - 20,223,810 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:15979156   PMID:22301074  


Genomics

Comparative Map Data
NCAM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1519,895,587 - 20,192,334 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl519,895,613 - 20,191,995 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha519,817,368 - 20,113,554 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0519,916,497 - 20,213,111 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl519,916,523 - 20,212,993 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,978,946 - 20,275,227 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0519,880,186 - 20,176,568 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0519,928,019 - 20,223,810 (-)NCBIUU_Cfam_GSD_1.0
NCAM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811112,961,420 - 113,278,436 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11112,961,275 - 113,278,436 (+)EnsemblGRCh38hg38GRCh38
GRCh3711112,832,142 - 113,149,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611112,337,205 - 112,654,368 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411112,337,367 - 112,652,530NCBI
Celera11109,984,979 - 110,302,094 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11108,759,657 - 109,076,750 (+)NCBIHuRef
CHM1_111112,714,961 - 113,032,145 (+)NCBICHM1_1
T2T-CHM13v2.011112,971,836 - 113,288,890 (+)NCBIT2T-CHM13v2.0
Ncam1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39949,413,434 - 49,710,909 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl949,413,436 - 49,710,225 (-)EnsemblGRCm39 Ensembl
GRCm38949,502,129 - 49,799,393 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl949,502,136 - 49,798,925 (-)EnsemblGRCm38mm10GRCm38
MGSCv37949,310,243 - 49,607,174 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36949,269,508 - 49,551,120 (-)NCBIMGSCv36mm8
Celera946,800,549 - 47,099,090 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.83NCBI
Ncam1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8858,762,088 - 59,062,131 (-)NCBIGRCr8
mRatBN7.2849,865,629 - 50,165,687 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl849,865,633 - 50,166,014 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx855,369,921 - 55,670,295 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0853,648,800 - 53,949,178 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0851,513,059 - 51,813,448 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0853,836,797 - 54,134,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl853,839,098 - 53,901,358 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0852,456,154 - 52,755,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4852,822,350 - 53,120,572 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1852,841,403 - 53,139,626 (-)NCBI
Celera849,420,106 - 49,716,981 (-)NCBICelera
RH 3.4 Map8537.1RGD
Cytogenetic Map8q23NCBI
Ncam1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541214,630,443 - 14,923,926 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541214,630,109 - 14,923,847 (+)NCBIChiLan1.0ChiLan1.0
NCAM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29113,709,900 - 114,024,850 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111114,804,204 - 115,119,218 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011107,845,507 - 108,160,441 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111111,688,524 - 112,003,435 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11111,925,677 - 112,000,401 (+)Ensemblpanpan1.1panPan2
Ncam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494795,149,341 - 95,443,034 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366121,262,544 - 1,556,016 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366121,262,557 - 1,556,281 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl940,628,631 - 40,960,591 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1940,628,602 - 40,960,605 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2945,463,323 - 45,794,721 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCAM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11104,332,622 - 104,647,258 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604321,358,968 - 21,671,871 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ncam1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247848,339,916 - 8,636,012 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247848,339,582 - 8,635,025 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NCAM1
3708 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001010950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001308483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001308484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619493 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005619506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014113186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014113188 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014113189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014113191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022418010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022418011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022418012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_022418013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664091 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664094 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664095 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664096 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664098 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664099 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038664100 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY860627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY860628 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY860629 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000371 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSCAFT00000022012   ⟹   ENSCAFP00000020441
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl519,898,697 - 20,112,352 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000022014   ⟹   ENSCAFP00000020443
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl519,898,697 - 19,993,776 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000022022   ⟹   ENSCAFP00000020450
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl519,898,697 - 19,959,009 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000069307   ⟹   ENSCAFP00000049342
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl519,895,613 - 20,191,995 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000075454   ⟹   ENSCAFP00000052939
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl519,895,613 - 19,960,688 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001615   ⟹   ENSCAFP00845001279
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl519,916,523 - 20,212,993 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001629   ⟹   ENSCAFP00845001288
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl519,916,523 - 19,982,046 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001669   ⟹   ENSCAFP00845001317
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl519,916,523 - 19,981,717 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001681   ⟹   ENSCAFP00845001327
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl519,917,138 - 20,017,649 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001721   ⟹   ENSCAFP00845001361
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl519,917,138 - 20,014,805 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001770   ⟹   ENSCAFP00845001397
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl519,917,138 - 19,982,046 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001812   ⟹   ENSCAFP00845001427
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl519,917,138 - 19,982,046 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001854   ⟹   ENSCAFP00845001463
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl519,917,138 - 19,982,046 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845001922   ⟹   ENSCAFP00845001510
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl519,929,403 - 19,982,046 (-)Ensembl
RefSeq Acc Id: NM_001010950   ⟹   NP_001010950
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1519,908,451 - 20,192,141 (-)NCBI
Dog10K_Boxer_Tasha519,830,229 - 20,113,554 (-)NCBI
ROS_Cfam_1.0519,929,375 - 20,212,913 (-)NCBI
UMICH_Zoey_3.1519,991,803 - 20,275,227 (-)NCBI
UNSW_CanFamBas_1.0519,893,039 - 20,176,568 (-)NCBI
UU_Cfam_GSD_1.0519,940,884 - 20,223,810 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001308483   ⟹   NP_001295412
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1519,895,591 - 20,192,141 (-)NCBI
Dog10K_Boxer_Tasha519,817,368 - 20,113,554 (-)NCBI
ROS_Cfam_1.0519,916,501 - 20,212,913 (-)NCBI
UMICH_Zoey_3.1519,978,946 - 20,275,227 (-)NCBI
UNSW_CanFamBas_1.0519,880,186 - 20,176,568 (-)NCBI
UU_Cfam_GSD_1.0519,928,019 - 20,223,810 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001308484   ⟹   NP_001295413
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1519,895,591 - 20,192,141 (-)NCBI
Dog10K_Boxer_Tasha519,817,368 - 20,113,554 (-)NCBI
ROS_Cfam_1.0519,916,501 - 20,212,913 (-)NCBI
UMICH_Zoey_3.1519,978,946 - 20,275,227 (-)NCBI
UNSW_CanFamBas_1.0519,880,186 - 20,176,568 (-)NCBI
UU_Cfam_GSD_1.0519,928,019 - 20,223,810 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038664088   ⟹   XP_038520016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,916,497 - 20,213,111 (-)NCBI
RefSeq Acc Id: XM_038664089   ⟹   XP_038520017
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,916,497 - 20,213,109 (-)NCBI
RefSeq Acc Id: XM_038664090   ⟹   XP_038520018
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,916,497 - 20,213,109 (-)NCBI
RefSeq Acc Id: XM_038664091   ⟹   XP_038520019
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,916,497 - 20,213,109 (-)NCBI
RefSeq Acc Id: XM_038664092   ⟹   XP_038520020
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,916,497 - 20,213,108 (-)NCBI
RefSeq Acc Id: XM_038664093   ⟹   XP_038520021
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,916,497 - 20,213,108 (-)NCBI
RefSeq Acc Id: XM_038664094   ⟹   XP_038520022
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,929,371 - 20,213,108 (-)NCBI
RefSeq Acc Id: XM_038664095   ⟹   XP_038520023
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,929,371 - 20,213,108 (-)NCBI
RefSeq Acc Id: XM_038664096   ⟹   XP_038520024
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,929,371 - 20,213,108 (-)NCBI
RefSeq Acc Id: XM_038664097   ⟹   XP_038520025
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,929,371 - 20,213,107 (-)NCBI
RefSeq Acc Id: XM_038664098   ⟹   XP_038520026
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,929,371 - 20,213,107 (-)NCBI
RefSeq Acc Id: XM_038664099   ⟹   XP_038520027
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,929,371 - 20,213,107 (-)NCBI
RefSeq Acc Id: XM_038664100   ⟹   XP_038520028
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0519,929,371 - 20,213,108 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001010950 (Get FASTA)   NCBI Sequence Viewer  
  NP_001295412 (Get FASTA)   NCBI Sequence Viewer  
  NP_001295413 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520016 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520017 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520018 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520019 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520020 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520021 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520022 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520023 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520024 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520025 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520026 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520027 (Get FASTA)   NCBI Sequence Viewer  
  XP_038520028 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAW52763 (Get FASTA)   NCBI Sequence Viewer  
  AAW52764 (Get FASTA)   NCBI Sequence Viewer  
  AAW52765 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCAFP00000020441.5
  ENSCAFP00000020443.4
  ENSCAFP00000020450.5
  ENSCAFP00000049342.2
  ENSCAFP00000052939.2
  ENSCAFP00000068224.1
  ENSCAFP00000070566.1
  ENSCAFP00000072709.1
  ENSCAFP00000075186.1
  ENSCAFP00030017868.1
  ENSCAFP00030017990.1
  ENSCAFP00030018147.1
  ENSCAFP00030018306.1
  ENSCAFP00030018682.1
  ENSCAFP00030018874.1
  ENSCAFP00030018978.1
  ENSCAFP00030019135.1
  ENSCAFP00040008013.1
  ENSCAFP00040008114.1
  ENSCAFP00040008185.1
  ENSCAFP00040008443.1
  ENSCAFP00040008523.1
  ENSCAFP00040008596.1
  ENSCAFP00040008653.1
  ENSCAFP00040008891.1
  ENSCAFP00845001279
  ENSCAFP00845001279.1
  ENSCAFP00845001288
  ENSCAFP00845001288.1
  ENSCAFP00845001317
  ENSCAFP00845001317.1
  ENSCAFP00845001327.1
  ENSCAFP00845001361.1
  ENSCAFP00845001397.1
  ENSCAFP00845001427.1
  ENSCAFP00845001463
  ENSCAFP00845001463.1
  ENSCAFP00845001510
  ENSCAFP00845001510.1
RefSeq Acc Id: NP_001295413   ⟸   NM_001308484
- Peptide Label: isoform 2 precursor
- UniProtKB: Q5I2D7 (UniProtKB/TrEMBL),   A0A8I3MCQ4 (UniProtKB/TrEMBL),   A0A8P0T269 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001295412   ⟸   NM_001308483
- Peptide Label: isoform 1 precursor
- UniProtKB: Q5I2D6 (UniProtKB/TrEMBL),   A0A8I3MCQ4 (UniProtKB/TrEMBL),   A0A8P0T269 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001010950   ⟸   NM_001010950
- Peptide Label: isoform 3 precursor
- UniProtKB: Q5I2D5 (UniProtKB/TrEMBL),   A0A8C0QHH5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000049342   ⟸   ENSCAFT00000069307
Ensembl Acc Id: ENSCAFP00000052939   ⟸   ENSCAFT00000075454
Ensembl Acc Id: ENSCAFP00000020441   ⟸   ENSCAFT00000022012
Ensembl Acc Id: ENSCAFP00000020443   ⟸   ENSCAFT00000022014
Ensembl Acc Id: ENSCAFP00000020450   ⟸   ENSCAFT00000022022
RefSeq Acc Id: XP_038520016   ⟸   XM_038664088
- Peptide Label: isoform X1
- UniProtKB: A0A8C0JZJ7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520019   ⟸   XM_038664091
- Peptide Label: isoform X4
- UniProtKB: A0A8I3MCQ4 (UniProtKB/TrEMBL),   A0A8P0T269 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520018   ⟸   XM_038664090
- Peptide Label: isoform X3
- UniProtKB: A0A8C0N109 (UniProtKB/TrEMBL),   A0A8I3MMR5 (UniProtKB/TrEMBL),   A0A8I3MCQ4 (UniProtKB/TrEMBL),   A0A8P0T269 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520017   ⟸   XM_038664089
- Peptide Label: isoform X2
- UniProtKB: A0A8C0N419 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520021   ⟸   XM_038664093
- Peptide Label: isoform X6
- UniProtKB: A0A8I3MCQ4 (UniProtKB/TrEMBL),   A0A8P0T269 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520020   ⟸   XM_038664092
- Peptide Label: isoform X5
- UniProtKB: A0A8I3MCQ4 (UniProtKB/TrEMBL),   A0A8P0T269 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520028   ⟸   XM_038664100
- Peptide Label: isoform X13
- UniProtKB: A0A8C0QHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520024   ⟸   XM_038664096
- Peptide Label: isoform X9
- UniProtKB: A0A8C0QHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520023   ⟸   XM_038664095
- Peptide Label: isoform X8
- UniProtKB: A0A8C0QHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520022   ⟸   XM_038664094
- Peptide Label: isoform X7
- UniProtKB: A0A8C0QHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520027   ⟸   XM_038664099
- Peptide Label: isoform X12
- UniProtKB: A0A8C0QHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520026   ⟸   XM_038664098
- Peptide Label: isoform X11
- UniProtKB: A0A8C0QHH5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038520025   ⟸   XM_038664097
- Peptide Label: isoform X10
- UniProtKB: A0A8C0QHH5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845001327   ⟸   ENSCAFT00845001681
Ensembl Acc Id: ENSCAFP00845001288   ⟸   ENSCAFT00845001629
Ensembl Acc Id: ENSCAFP00845001427   ⟸   ENSCAFT00845001812
Ensembl Acc Id: ENSCAFP00845001317   ⟸   ENSCAFT00845001669
Ensembl Acc Id: ENSCAFP00845001510   ⟸   ENSCAFT00845001922
Ensembl Acc Id: ENSCAFP00845001361   ⟸   ENSCAFT00845001721
Ensembl Acc Id: ENSCAFP00845001397   ⟸   ENSCAFT00845001770
Ensembl Acc Id: ENSCAFP00845001279   ⟸   ENSCAFT00845001615
Ensembl Acc Id: ENSCAFP00845001463   ⟸   ENSCAFT00845001854
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000013844 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030010451 UniProtKB/TrEMBL
  ENSCAFG00040004550 UniProtKB/TrEMBL
  ENSCAFG00845000915 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000022012.6 UniProtKB/TrEMBL
  ENSCAFT00000022014.6 UniProtKB/TrEMBL
  ENSCAFT00000022022.5 UniProtKB/TrEMBL
  ENSCAFT00000069307.2 UniProtKB/TrEMBL
  ENSCAFT00000075454.2 UniProtKB/TrEMBL
  ENSCAFT00000094169.1 UniProtKB/TrEMBL
  ENSCAFT00000095964.1 UniProtKB/TrEMBL
  ENSCAFT00000098687.1 UniProtKB/TrEMBL
  ENSCAFT00000100339.1 UniProtKB/TrEMBL
  ENSCAFT00030020469.1 UniProtKB/TrEMBL
  ENSCAFT00030020631.1 UniProtKB/TrEMBL
  ENSCAFT00030020801.1 UniProtKB/TrEMBL
  ENSCAFT00030020993.1 UniProtKB/TrEMBL
  ENSCAFT00030021430.1 UniProtKB/TrEMBL
  ENSCAFT00030021656.1 UniProtKB/TrEMBL
  ENSCAFT00030021763.1 UniProtKB/TrEMBL
  ENSCAFT00030021940.1 UniProtKB/TrEMBL
  ENSCAFT00040009237.1 UniProtKB/TrEMBL
  ENSCAFT00040009369.1 UniProtKB/TrEMBL
  ENSCAFT00040009446.1 UniProtKB/TrEMBL
  ENSCAFT00040009741.1 UniProtKB/TrEMBL
  ENSCAFT00040009837.1 UniProtKB/TrEMBL
  ENSCAFT00040009912.1 UniProtKB/TrEMBL
  ENSCAFT00040009981.1 UniProtKB/TrEMBL
  ENSCAFT00040010245.1 UniProtKB/TrEMBL
  ENSCAFT00845001615 ENTREZGENE
  ENSCAFT00845001615.1 UniProtKB/TrEMBL
  ENSCAFT00845001629 ENTREZGENE
  ENSCAFT00845001629.1 UniProtKB/TrEMBL
  ENSCAFT00845001669 ENTREZGENE
  ENSCAFT00845001669.1 UniProtKB/TrEMBL
  ENSCAFT00845001681.1 UniProtKB/TrEMBL
  ENSCAFT00845001721.1 UniProtKB/TrEMBL
  ENSCAFT00845001770.1 UniProtKB/TrEMBL
  ENSCAFT00845001812.1 UniProtKB/TrEMBL
  ENSCAFT00845001854 ENTREZGENE
  ENSCAFT00845001854.1 UniProtKB/TrEMBL
  ENSCAFT00845001922 ENTREZGENE
  ENSCAFT00845001922.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Neural/epithelial_adhesion UniProtKB/TrEMBL
  Neural_cell_adh UniProtKB/TrEMBL
KEGG Report cfa:479435 UniProtKB/TrEMBL
NCBI Gene NCAM1 ENTREZGENE
PANTHER CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN UniProtKB/TrEMBL
  PTHR12231:SF239 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
  Ig_3 UniProtKB/TrEMBL
PRINTS NCAMFAMILY UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  IGv UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A8C0JZJ7 ENTREZGENE
  A0A8C0MWL1_CANLF UniProtKB/TrEMBL
  A0A8C0MXA5_CANLF UniProtKB/TrEMBL
  A0A8C0N109 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0N1P8_CANLF UniProtKB/TrEMBL
  A0A8C0N3Z0_CANLF UniProtKB/TrEMBL
  A0A8C0N419 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0N8G0_CANLF UniProtKB/TrEMBL
  A0A8C0Q3G7_CANLF UniProtKB/TrEMBL
  A0A8C0Q4V7_CANLF UniProtKB/TrEMBL
  A0A8C0Q7K5_CANLF UniProtKB/TrEMBL
  A0A8C0Q9T5_CANLF UniProtKB/TrEMBL
  A0A8C0QHH5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0RHY5_CANLF UniProtKB/TrEMBL
  A0A8C0RY07_CANLF UniProtKB/TrEMBL
  A0A8C0RY73_CANLF UniProtKB/TrEMBL
  A0A8C0RY85_CANLF UniProtKB/TrEMBL
  A0A8I3MCQ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MDJ1_CANLF UniProtKB/TrEMBL
  A0A8I3MHC0_CANLF UniProtKB/TrEMBL
  A0A8I3MMR5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3MN47_CANLF UniProtKB/TrEMBL
  A0A8I3MN83_CANLF UniProtKB/TrEMBL
  A0A8I3MXI2_CANLF UniProtKB/TrEMBL
  A0A8I3RPK4_CANLF UniProtKB/TrEMBL
  A0A8I3RRA0_CANLF UniProtKB/TrEMBL
  A0A8P0NFI9_CANLF UniProtKB/TrEMBL
  A0A8P0PN90_CANLF UniProtKB/TrEMBL
  A0A8P0SIB4_CANLF UniProtKB/TrEMBL
  A0A8P0T269 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0T5D1_CANLF UniProtKB/TrEMBL
  A0A8P0TK21_CANLF UniProtKB/TrEMBL
  A0A8P0TUZ9_CANLF UniProtKB/TrEMBL
  Q5I2D5 ENTREZGENE, UniProtKB/TrEMBL
  Q5I2D6 ENTREZGENE, UniProtKB/TrEMBL
  Q5I2D7 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8P0TN91 UniProtKB/TrEMBL
VGNC ID VGNC:43636 ENTREZGENE