Ncam1 (neural cell adhesion molecule 1) - Rat Genome Database
Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ncam1 (neural cell adhesion molecule 1) Ictidomys tridecemlineatus
Analyze
Symbol: Ncam1
Name: neural cell adhesion molecule 1
RGD ID: 12562631
Description: ENCODES a protein that exhibits LRR domain binding (ortholog); phosphatase binding (ortholog); INVOLVED IN aging (ortholog); animal organ regeneration (ortholog); axonal fasciculation (ortholog); PARTICIPATES IN fibroblast growth factor signaling pathway; ASSOCIATED WITH acute promyelocytic leukemia (ortholog); adenoma (ortholog); Alzheimer's disease (ortholog); FOUND IN axon (ortholog); cell surface (ortholog); cell-cell junction (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366121,262,557 - 1,556,281 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
Ncam1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049366121,262,557 - 1,556,281 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NCAM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl11112,961,247 - 113,278,436 (+)EnsemblGRCh38hg38GRCh38
GRCh3811112,961,420 - 113,278,436 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh3711112,832,142 - 113,149,158 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh3711112,831,969 - 113,149,158 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611112,337,205 - 112,654,368 (+)NCBINCBI36hg18NCBI36
Build 3411112,337,367 - 112,652,530NCBI
Celera11109,984,979 - 110,302,094 (+)NCBI
Cytogenetic Map11q23.2NCBI
HuRef11108,759,657 - 109,076,750 (+)NCBIHuRef
CHM1_111112,714,961 - 113,032,145 (+)NCBICHM1_1
Ncam1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39949,413,429 - 49,710,909 (-)NCBIGRCm39mm39
GRCm38949,502,129 - 49,799,393 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl949,502,136 - 49,798,925 (-)EnsemblGRCm38mm10GRCm38
MGSCv37949,310,243 - 49,607,174 (-)NCBIGRCm37mm9NCBIm37
MGSCv36949,269,508 - 49,551,120 (-)NCBImm8
Celera946,800,549 - 47,099,090 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.83NCBI
Ncam1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2849,865,629 - 50,165,687 (-)NCBI
Rnor_6.0 Ensembl853,839,098 - 53,901,358 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0853,836,797 - 54,134,881 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0852,456,154 - 52,755,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4852,822,350 - 53,120,572 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1852,841,403 - 53,139,626 (-)NCBI
Celera849,420,106 - 49,716,981 (-)NCBICelera
RH 3.4 Map8537.1RGD
Cytogenetic Map8q23NCBI
Ncam1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541214,630,443 - 14,923,926 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541214,630,109 - 14,923,847 (+)NCBIChiLan1.0ChiLan1.0
NCAM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.111111,688,524 - 112,003,435 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11111,925,677 - 112,000,401 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v011107,845,507 - 108,160,441 (+)NCBIMhudiblu_PPA_v0panPan3
NCAM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl519,895,613 - 20,191,995 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1519,895,587 - 20,192,334 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
NCAM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl940,628,750 - 40,960,608 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1940,628,602 - 40,960,605 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2945,463,323 - 45,794,721 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NCAM1
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11104,332,622 - 104,647,258 (+)NCBI
Ncam1
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247848,339,582 - 8,635,025 (+)NCBI


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_005334211 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005334212 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005334213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005334214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013362364 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013362365 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732389 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732393 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021732394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AGTP01076180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01076181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AGTP01076182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_005334211   ⟹   XP_005334268
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,280 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005334212   ⟹   XP_005334269
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,272 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005334213   ⟹   XP_005334270
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,272 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005334214   ⟹   XP_005334271
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,272 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013362364   ⟹   XP_013217818
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,274,554 - 1,556,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013362365   ⟹   XP_013217819
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,274,554 - 1,556,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732386   ⟹   XP_021588061
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732387   ⟹   XP_021588062
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,281 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732388   ⟹   XP_021588063
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,274 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732389   ⟹   XP_021588064
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,272 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732390   ⟹   XP_021588065
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,271 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732391   ⟹   XP_021588066
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,262,557 - 1,556,273 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732392   ⟹   XP_021588067
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,274,554 - 1,556,273 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732393   ⟹   XP_021588068
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,274,554 - 1,556,270 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021732394   ⟹   XP_021588069
RefSeq Status:
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0NW_0049366121,274,554 - 1,556,270 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: XP_005334271   ⟸   XM_005334214
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_005334270   ⟸   XM_005334213
- Peptide Label: isoform X8
- Sequence:
RefSeq Acc Id: XP_005334269   ⟸   XM_005334212
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_005334268   ⟸   XM_005334211
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_013217819   ⟸   XM_013362365
- Peptide Label: isoform X15
- Sequence:
RefSeq Acc Id: XP_013217818   ⟸   XM_013362364
- Peptide Label: isoform X12
- Sequence:
RefSeq Acc Id: XP_021588062   ⟸   XM_021732387
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_021588061   ⟸   XM_021732386
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_021588063   ⟸   XM_021732388
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_021588066   ⟸   XM_021732391
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_021588064   ⟸   XM_021732389
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_021588065   ⟸   XM_021732390
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_021588067   ⟸   XM_021732392
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_021588069   ⟸   XM_021732394
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_021588068   ⟸   XM_021732393
- Peptide Label: isoform X13
- Sequence:
Protein Domains
Fibronectin type-III   Ig-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000003495 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSTOP00000003128 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000029007 UniProtKB/TrEMBL
  ENSSTOP00000030099 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOP00000032592 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000003494 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOT00000033000 ENTREZGENE, UniProtKB/TrEMBL
  ENSSTOT00000034306 UniProtKB/TrEMBL
  ENSSTOT00000040144 ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro FN3_dom UniProtKB/TrEMBL
  FN3_sf UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_I-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/TrEMBL
  Ncam1 UniProtKB/TrEMBL
  Neural_cell_adh UniProtKB/TrEMBL
NCBI Gene Ncam1 ENTREZGENE
PANTHER PTHR12231:SF239 UniProtKB/TrEMBL
Pfam fn3 UniProtKB/TrEMBL
  I-set UniProtKB/TrEMBL
PRINTS NCAMFAMILY UniProtKB/TrEMBL
PROSITE FN3 UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
SMART FN3 UniProtKB/TrEMBL
  IGc2 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
  SSF49265 UniProtKB/TrEMBL
UniProt A0A287D5Z5_ICTTR UniProtKB/TrEMBL
  A0A287D986_ICTTR UniProtKB/TrEMBL
  A0A287DGF5_ICTTR UniProtKB/TrEMBL
  I3M2D7_ICTTR UniProtKB/TrEMBL