MAP1B (microtubule associated protein 1B) - Rat Genome Database

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Gene: MAP1B (microtubule associated protein 1B) Pan paniscus
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Symbol: MAP1B
Name: microtubule associated protein 1B
RGD ID: 12008506
Description: ENCODES a protein that exhibits actin binding (ortholog); microtubule binding (ortholog); phospholipid binding (ortholog); INVOLVED IN axon extension (ortholog); axonogenesis (ortholog); cellular response to growth factor stimulus (ortholog); PARTICIPATES IN Reelin signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); autosomal dominant nonsyndromic deafness 83 (ortholog); Brain Injuries (ortholog); FOUND IN apical dendrite (ortholog); axon (ortholog); basal dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: microtubule-associated protein 1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2443,104,167 - 43,206,535 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1541,257,795 - 41,360,140 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0543,102,739 - 43,204,978 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1543,701,530 - 43,803,393 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl543,701,530 - 43,803,393 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAP1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2443,104,167 - 43,206,535 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1541,257,795 - 41,360,140 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0543,102,739 - 43,204,978 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1543,701,530 - 43,803,393 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl543,701,530 - 43,803,393 (-)Ensemblpanpan1.1panPan2
MAP1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38572,107,475 - 72,209,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl572,107,234 - 72,209,565 (+)EnsemblGRCh38hg38GRCh38
GRCh37571,403,302 - 71,505,392 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36571,438,874 - 71,541,153 (+)NCBINCBI36Build 36hg18NCBI36
Build 34571,515,074 - 71,538,609NCBI
Celera567,298,553 - 67,400,783 (+)NCBICelera
Cytogenetic Map5q13.2NCBI
HuRef566,608,550 - 66,710,969 (+)NCBIHuRef
CHM1_1570,835,805 - 70,938,065 (+)NCBICHM1_1
T2T-CHM13v2.0572,588,652 - 72,690,733 (+)NCBIT2T-CHM13v2.0
Map1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391399,557,972 - 99,653,110 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1399,557,954 - 99,653,048 (-)EnsemblGRCm39 Ensembl
GRCm381399,421,464 - 99,516,602 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1399,421,446 - 99,516,540 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713100,191,419 - 100,286,557 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613100,524,598 - 100,616,697 (-)NCBIMGSCv36mm8
Celera13103,077,104 - 103,171,785 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.9NCBI
Map1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8232,551,423 - 32,644,471 (-)NCBIGRCr8
mRatBN7.2230,817,261 - 30,910,458 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl230,817,261 - 30,910,317 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx237,887,269 - 37,980,116 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0235,981,626 - 36,074,463 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0230,785,607 - 30,878,656 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0229,675,391 - 29,768,750 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl229,675,391 - 29,768,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0248,837,124 - 48,930,483 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4230,415,235 - 30,508,354 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1230,339,919 - 30,360,389 (-)NCBI
Celera226,841,920 - 26,934,955 (-)NCBICelera
Cytogenetic Map2q12NCBI
Map1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955575913,723 - 1,021,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955575914,607 - 1,020,971 (+)NCBIChiLan1.0ChiLan1.0
MAP1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1255,175,000 - 55,258,160 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl255,174,837 - 55,253,975 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha252,143,740 - 52,226,846 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0255,691,610 - 55,774,703 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl255,691,446 - 55,771,854 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1252,751,922 - 52,834,958 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0253,519,445 - 53,602,504 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0254,410,527 - 54,493,742 (+)NCBIUU_Cfam_GSD_1.0
Map1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213186,487,418 - 186,592,600 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365494,266,351 - 4,371,644 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365494,266,371 - 4,371,579 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1648,403,568 - 48,498,885 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11648,403,338 - 48,501,453 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21652,391,814 - 52,489,652 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAP1B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1466,445,687 - 66,548,595 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl466,445,901 - 66,549,142 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604915,202,185 - 15,305,303 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Map1b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249051,198,205 - 1,304,309 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249051,198,157 - 1,304,128 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSPPAT00000040321   ⟹   ENSPPAP00000017612
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl543,701,530 - 43,803,393 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000040325   ⟹   ENSPPAP00000017616
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl543,794,274 - 43,803,134 (-)Ensembl
RefSeq Acc Id: XM_003810490   ⟹   XP_003810538
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2443,104,167 - 43,206,535 (-)NCBI
NHGRI_mPanPan1541,257,795 - 41,360,140 (-)NCBI
Mhudiblu_PPA_v0543,102,739 - 43,204,978 (-)NCBI
PanPan1.1543,701,530 - 43,803,393 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024928822   ⟹   XP_024784590
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2443,104,167 - 43,133,841 (-)NCBI
NHGRI_mPanPan1541,257,795 - 41,287,470 (-)NCBI
Mhudiblu_PPA_v0543,102,739 - 43,132,660 (-)NCBI
PanPan1.1543,701,530 - 43,731,454 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810538 (Get FASTA)   NCBI Sequence Viewer  
  XP_024784590 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000017612.1
  ENSPPAP00000017616.1
RefSeq Acc Id: XP_003810538   ⟸   XM_003810490
- Peptide Label: isoform X1
- UniProtKB: A0A2R9AJR0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024784590   ⟸   XM_024928822
- Peptide Label: isoform X2
- UniProtKB: A0A2R9AJR0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000017612   ⟸   ENSPPAT00000040321
Ensembl Acc Id: ENSPPAP00000017616   ⟸   ENSPPAT00000040325


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031892 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040321.1 UniProtKB/TrEMBL
  ENSPPAT00000040325.1 UniProtKB/TrEMBL
InterPro MAP1 UniProtKB/TrEMBL
  MAP1B_neuraxin UniProtKB/TrEMBL
KEGG Report pps:100973477 UniProtKB/TrEMBL
NCBI Gene MAP1B ENTREZGENE
PANTHER PTHR13843 UniProtKB/TrEMBL
  PTHR13843:SF5 UniProtKB/TrEMBL
Pfam MAP1B_neuraxin UniProtKB/TrEMBL
PROSITE MAP1B_NEURAXIN UniProtKB/TrEMBL
UniProt A0A2R9AJR0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9AJR7_PANPA UniProtKB/TrEMBL