MAP1B (microtubule associated protein 1B) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: MAP1B (microtubule associated protein 1B) Pan paniscus
Analyze
Symbol: MAP1B
Name: microtubule associated protein 1B
RGD ID: 12008506
Description: ENCODES a protein that exhibits actin binding (ortholog); microtubule binding (ortholog); phospholipid binding (ortholog); INVOLVED IN axon extension (ortholog); axonogenesis (ortholog); cellular process (ortholog); PARTICIPATES IN Reelin signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Brain Injuries (ortholog); Developmental Disabilities (ortholog); FOUND IN apical dendrite (ortholog); axon (ortholog); basal dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: microtubule-associated protein 1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1543,701,530 - 43,803,393 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl543,701,530 - 43,803,393 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0543,102,739 - 43,204,978 (-)NCBIMhudiblu_PPA_v0panPan3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
MAP1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1543,701,530 - 43,803,393 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl543,701,530 - 43,803,393 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0543,102,739 - 43,204,978 (-)NCBIMhudiblu_PPA_v0panPan3
MAP1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl572,107,234 - 72,209,565 (+)EnsemblGRCh38hg38GRCh38
GRCh38572,107,475 - 72,209,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37571,403,302 - 71,505,392 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36571,438,874 - 71,541,153 (+)NCBINCBI36hg18NCBI36
Build 34571,515,074 - 71,538,609NCBI
Celera567,298,553 - 67,400,783 (+)NCBI
Cytogenetic Map5q13.2NCBI
HuRef566,608,550 - 66,710,969 (+)NCBIHuRef
CHM1_1570,835,782 - 70,938,065 (+)NCBICHM1_1
Map1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391399,557,972 - 99,653,110 (-)NCBIGRCm39mm39
GRCm39 Ensembl1399,557,954 - 99,653,048 (-)Ensembl
GRCm381399,421,464 - 99,516,602 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1399,421,446 - 99,516,540 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713100,191,419 - 100,286,557 (-)NCBIGRCm37mm9NCBIm37
MGSCv3613100,524,598 - 100,616,697 (-)NCBImm8
Celera13103,077,104 - 103,171,785 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.9NCBI
Map1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2230,817,261 - 30,910,458 (-)NCBI
Rnor_6.0 Ensembl229,675,391 - 29,768,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0229,675,391 - 29,768,750 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0248,837,124 - 48,930,483 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4230,415,235 - 30,508,354 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1230,339,919 - 30,360,389 (-)NCBI
Celera226,841,920 - 26,934,955 (-)NCBICelera
Cytogenetic Map2q12NCBI
Map1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955575913,723 - 1,021,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955575914,607 - 1,020,971 (+)NCBIChiLan1.0ChiLan1.0
MAP1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1255,175,000 - 55,258,160 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl255,174,837 - 55,253,975 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha252,143,740 - 52,226,846 (+)NCBI
ROS_Cfam_1.0255,691,610 - 55,774,703 (+)NCBI
UMICH_Zoey_3.1252,751,922 - 52,834,958 (+)NCBI
UNSW_CanFamBas_1.0253,519,445 - 53,602,504 (+)NCBI
UU_Cfam_GSD_1.0254,410,527 - 54,493,742 (+)NCBI
Map1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213186,487,418 - 186,592,600 (+)NCBI
SpeTri2.0NW_0049365494,266,371 - 4,371,579 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1648,403,526 - 48,498,896 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11648,403,338 - 48,501,453 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21652,391,814 - 52,489,652 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAP1B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1466,445,687 - 66,548,595 (+)NCBI
ChlSab1.1 Ensembl466,445,901 - 66,549,142 (+)Ensembl
Map1b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249051,198,157 - 1,304,128 (+)NCBI


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000040321   ⟹   ENSPPAP00000017612
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl543,701,530 - 43,803,393 (-)Ensembl
RefSeq Acc Id: ENSPPAT00000040325   ⟹   ENSPPAP00000017616
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl543,794,274 - 43,803,134 (-)Ensembl
RefSeq Acc Id: XM_003810490   ⟹   XP_003810538
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1543,701,530 - 43,803,393 (-)NCBI
Mhudiblu_PPA_v0543,102,739 - 43,204,978 (-)NCBI
Sequence:
RefSeq Acc Id: XM_024928822   ⟹   XP_024784590
RefSeq Status:
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1543,701,530 - 43,731,454 (-)NCBI
Mhudiblu_PPA_v0543,102,739 - 43,132,660 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003810538 (Get FASTA)   NCBI Sequence Viewer  
  XP_024784590 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003810538   ⟸   XM_003810490
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_024784590   ⟸   XM_024928822
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSPPAP00000017612   ⟸   ENSPPAT00000040321
RefSeq Acc Id: ENSPPAP00000017616   ⟸   ENSPPAT00000040325


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000031892 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSPPAP00000017612 UniProtKB/TrEMBL
  ENSPPAP00000017616 UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000040321 UniProtKB/TrEMBL
  ENSPPAT00000040325 UniProtKB/TrEMBL
InterPro MAP1 UniProtKB/TrEMBL
  MAP1B UniProtKB/TrEMBL
  MAP1B_neuraxin UniProtKB/TrEMBL
KEGG Report pps:100973477 UniProtKB/TrEMBL
NCBI Gene MAP1B ENTREZGENE
PANTHER PTHR13843 UniProtKB/TrEMBL
  PTHR13843:SF5 UniProtKB/TrEMBL
Pfam MAP1B_neuraxin UniProtKB/TrEMBL
PROSITE MAP1B_NEURAXIN UniProtKB/TrEMBL
UniProt A0A2R9AJR0_PANPA UniProtKB/TrEMBL
  A0A2R9AJR7_PANPA UniProtKB/TrEMBL