MAP1B (microtubule associated protein 1B) - Rat Genome Database
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Gene: MAP1B (microtubule associated protein 1B) Sus scrofa
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Symbol: MAP1B
Name: microtubule associated protein 1B
RGD ID: 14171775
Description: ENCODES a protein that exhibits actin binding (ortholog); microtubule binding (ortholog); phospholipid binding (ortholog); INVOLVED IN axon extension (ortholog); axonogenesis (ortholog); cellular process (ortholog); PARTICIPATES IN Reelin signaling pathway; ASSOCIATED WITH autism spectrum disorder (ortholog); Brain Injuries (ortholog); Developmental Disabilities (ortholog); FOUND IN apical dendrite (ortholog); axon (ortholog); basal dendrite (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Also known as: microtubule-associated protein 1B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1648,403,526 - 48,498,896 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11648,403,338 - 48,501,453 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21652,391,814 - 52,489,652 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

Genomics

Comparative Map Data
MAP1B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1648,403,526 - 48,498,896 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11648,403,338 - 48,501,453 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21652,391,814 - 52,489,652 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAP1B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl572,107,234 - 72,209,565 (+)EnsemblGRCh38hg38GRCh38
GRCh38572,107,475 - 72,209,565 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37571,403,302 - 71,505,392 (+)NCBIGRCh37GRCh37hg19GRCh37
GRCh37571,403,118 - 71,505,397 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36571,438,874 - 71,541,153 (+)NCBINCBI36hg18NCBI36
Build 34571,515,074 - 71,538,609NCBI
Celera567,298,553 - 67,400,783 (+)NCBI
Cytogenetic Map5q13.2NCBI
HuRef566,608,550 - 66,710,969 (+)NCBIHuRef
CHM1_1570,835,782 - 70,938,065 (+)NCBICHM1_1
Map1b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391399,557,972 - 99,653,110 (-)NCBIGRCm39mm39
GRCm381399,421,464 - 99,516,602 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1399,421,446 - 99,516,540 (-)EnsemblGRCm38mm10GRCm38
MGSCv3713100,191,419 - 100,286,557 (-)NCBIGRCm37mm9NCBIm37
MGSCv3613100,524,598 - 100,616,697 (-)NCBImm8
Celera13103,077,104 - 103,171,785 (-)NCBICelera
Cytogenetic Map13D1NCBI
cM Map1352.9NCBI
Map1b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2230,817,261 - 30,910,458 (-)NCBI
Rnor_6.0 Ensembl229,675,391 - 29,768,750 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0229,675,391 - 29,768,750 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0248,837,124 - 48,930,483 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4230,415,235 - 30,508,354 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1230,339,919 - 30,360,389 (-)NCBI
Celera226,841,920 - 26,934,955 (-)NCBICelera
Cytogenetic Map2q12NCBI
Map1b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955575913,723 - 1,021,028 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955575914,607 - 1,020,971 (+)NCBIChiLan1.0ChiLan1.0
MAP1B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1543,701,530 - 43,803,393 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl543,701,530 - 43,803,393 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0543,102,739 - 43,204,978 (-)NCBIMhudiblu_PPA_v0panPan3
MAP1B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1 Ensembl255,174,837 - 55,253,975 (+)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1255,175,000 - 55,258,160 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Map1b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
SpeTri2.0NW_0049365494,266,371 - 4,371,579 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAP1B
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1466,445,687 - 66,548,595 (+)NCBI
ChlSab1.1 Ensembl466,445,901 - 66,549,142 (+)Ensembl
Map1b
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249051,198,157 - 1,304,128 (+)NCBI


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1 3 23 2
Low 8 3 5 2 2 1 1
Below cutoff 2

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000018484   ⟹   ENSSSCP00000017984
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1648,403,526 - 48,494,882 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000037772   ⟹   ENSSSCP00000056865
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1648,403,568 - 48,498,885 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000057226   ⟹   ENSSSCP00000031795
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1648,403,641 - 48,498,896 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000079998   ⟹   ENSSSCP00000061333
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1648,403,612 - 48,417,607 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000089415   ⟹   ENSSSCP00000072120
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1648,403,612 - 48,417,620 (+)Ensembl
RefSeq Acc Id: XM_003134032   ⟹   XP_003134080
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11648,403,338 - 48,501,453 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005672533   ⟹   XP_005672590
RefSeq Status:
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11648,472,723 - 48,501,453 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003134080 (Get FASTA)   NCBI Sequence Viewer  
  XP_005672590 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_003134080   ⟸   XM_003134032
- Peptide Label: isoform X1
- UniProtKB: A0A287BL20 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005672590   ⟸   XM_005672533
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSSSCP00000061333   ⟸   ENSSSCT00000079998
RefSeq Acc Id: ENSSSCP00000072120   ⟸   ENSSSCT00000089415
RefSeq Acc Id: ENSSSCP00000056865   ⟸   ENSSSCT00000037772
RefSeq Acc Id: ENSSSCP00000031795   ⟸   ENSSSCT00000057226
RefSeq Acc Id: ENSSSCP00000017984   ⟸   ENSSSCT00000018484


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000016974 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSSSCP00000017984 UniProtKB/TrEMBL
  ENSSSCP00000031795 UniProtKB/TrEMBL
  ENSSSCP00000056865 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCP00000061333 UniProtKB/TrEMBL
  ENSSSCP00000072120 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000018484 UniProtKB/TrEMBL
  ENSSSCT00000037772 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCT00000057226 UniProtKB/TrEMBL
  ENSSSCT00000079998 UniProtKB/TrEMBL
  ENSSSCT00000089415 UniProtKB/TrEMBL
InterPro MAP1 UniProtKB/TrEMBL
  MAP1B UniProtKB/TrEMBL
  MAP1B_neuraxin UniProtKB/TrEMBL
KEGG Report ssc:100519062 UniProtKB/TrEMBL
NCBI Gene MAP1B ENTREZGENE
PANTHER PTHR13843 UniProtKB/TrEMBL
  PTHR13843:SF5 UniProtKB/TrEMBL
Pfam MAP1B_neuraxin UniProtKB/TrEMBL
PROSITE MAP1B_NEURAXIN UniProtKB/TrEMBL
UniProt A0A286ZJQ4_PIG UniProtKB/TrEMBL
  A0A287BL20 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QH42_PIG UniProtKB/TrEMBL
  A0A5G2R713_PIG UniProtKB/TrEMBL
  F1SK12_PIG UniProtKB/TrEMBL
VGNC ID VGNC:89979 ENTREZGENE