Sp1 (trans-acting transcription factor 1) - Rat Genome Database

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Gene: Sp1 (trans-acting transcription factor 1) Mus musculus
Analyze
Symbol: Sp1
Name: trans-acting transcription factor 1
RGD ID: 11334
MGI Page MGI
Description: Enables DNA-binding transcription activator activity, RNA polymerase II-specific; DNA-binding transcription factor binding activity; and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription, DNA-templated and response to hydroperoxide. Acts upstream of or within several processes, including animal organ development; embryo development; and mRNA transcription by RNA polymerase II. Located in chromatin and nucleus. Is expressed in several structures, including central nervous system; early conceptus; epithelium; eye; and genitourinary system. Orthologous to human SP1 (Sp1 transcription factor); PARTICIPATES IN forkhead class A signaling pathway; hypoxia inducible factor pathway; interleukin-4 signaling pathway; INTERACTS WITH (R)-lipoic acid; 1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: 1110003E12Rik; AA450830; AI845540; Sp1-1; specificity protein 1; transcription factor Sp1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm18697  
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,314,751 - 102,344,839 (+)NCBIGRCm39mm39
GRCm39 Ensembl15102,314,578 - 102,344,839 (+)Ensembl
GRCm3815102,406,316 - 102,436,404 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,406,143 - 102,436,404 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715102,236,747 - 102,266,835 (+)NCBIGRCm37mm9NCBIm37
MGSCv3615102,234,362 - 102,260,713 (+)NCBImm8
Celera15104,563,277 - 104,594,207 (+)NCBICelera
Cytogenetic Map15F3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-catechin  (ISO)
(-)-demecolcine  (ISO)
(20S)-ginsenoside Rg3  (ISO)
(R)-lipoic acid  (EXP)
(S)-nicotine  (ISO)
1,2-dimethylhydrazine  (ISO)
1-methyl-4-phenyl-1,2,3,6-tetrahydropyridine  (EXP,ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-chloroethanol  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (ISO)
3-methylcholanthrene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (EXP)
4-nonylphenol  (EXP)
4-tert-Octylphenol  (EXP)
5-aza-2'-deoxycytidine  (EXP,ISO)
5-azacytidine  (EXP,ISO)
5-fluorouracil  (ISO)
7,12-dimethyltetraphene  (ISO)
acetaldehyde  (ISO)
AH23848  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
allethrin  (ISO)
alpha-D-galactose  (ISO)
alpha-naphthoflavone  (ISO)
ammonium chloride  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (ISO)
antirheumatic drug  (ISO)
aristolochic acid  (ISO)
Aroclor 1254  (ISO)
arsane  (EXP)
arsenic atom  (EXP)
arsenous acid  (ISO)
artesunate  (ISO)
asbestos  (ISO)
astaxanthin  (ISO)
bathocuproine disulfonic acid  (ISO)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
Butylbenzyl phthalate  (EXP)
cadmium atom  (EXP,ISO)
cadmium dichloride  (EXP,ISO)
Calcimycin  (ISO)
camptothecin  (ISO)
capsaicin  (ISO)
carbon nanotube  (EXP)
chloroprene  (ISO)
chlorpyrifos  (ISO)
choline  (EXP)
chromium(6+)  (ISO)
cisplatin  (EXP,ISO)
clofarabine  (ISO)
clofibrate  (EXP)
cobalt dichloride  (ISO)
cocaine  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cordycepin  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
curcumin  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
D-penicillamine  (ISO)
decabromodiphenyl ether  (ISO)
deoxynivalenol  (ISO)
desferrioxamine B  (ISO)
diarsenic trioxide  (ISO)
diazinon  (ISO)
dibutyl phthalate  (EXP)
dieldrin  (ISO)
diethylstilbestrol  (EXP)
dimethyl sulfoxide  (ISO)
dioxygen  (ISO)
disodium selenite  (EXP,ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
epoxomicin  (ISO)
esculetin  (ISO)
ethanol  (EXP,ISO)
etoposide  (ISO)
flutamide  (ISO)
folic acid  (EXP,ISO)
fulvestrant  (ISO)
galactose  (ISO)
genistein  (ISO)
gentamycin  (ISO)
glucose  (ISO)
glutathione  (ISO)
glycitein  (ISO)
glyphosate  (ISO)
homocysteic acid  (ISO)
hydrogen peroxide  (EXP,ISO)
indole-3-methanol  (ISO)
irinotecan  (ISO)
iron atom  (ISO)
iron(0)  (ISO)
isoprenaline  (EXP)
jaceosidin  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (EXP)
lead diacetate  (EXP,ISO)
lead(0)  (EXP,ISO)
lead(2+)  (EXP,ISO)
lead(II) chloride  (EXP)
lipoic acid  (EXP)
lipopolysaccharide  (EXP,ISO)
LY294002  (EXP,ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
mercury dichloride  (ISO)
metformin  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (EXP,ISO)
methylparaben  (ISO)
methylseleninic acid  (ISO)
mibolerone  (ISO)
mithramycin  (ISO)
monosodium L-glutamate  (ISO)
N-acetyl-L-cysteine  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP,ISO)
N-butyl-N-(4-hydroxybutyl)nitrosamine  (EXP)
N-ethylmaleimide  (EXP,ISO)
N-methyl-4-phenylpyridinium  (ISO)
neocuproine  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nicotine  (ISO)
nimustine  (ISO)
olomoucine  (ISO)
oxaliplatin  (ISO)
p-tert-Amylphenol  (EXP)
palbociclib  (ISO)
paracetamol  (EXP)
PD 168393  (ISO)
pentachlorophenol  (EXP)
phenobarbital  (EXP)
phenylephrine  (EXP)
PhIP  (ISO)
phorbol 13-acetate 12-myristate  (EXP,ISO)
platycodin D  (ISO)
promegestone  (ISO)
propiconazole  (EXP)
protein kinase inhibitor  (ISO)
pterostilbene  (ISO)
quercetin  (EXP,ISO)
quercetin 3-O-beta-D-galactopyranoside  (ISO)
quinacrine  (ISO)
resveratrol  (EXP,ISO)
S-adenosyl-L-homocysteine  (ISO)
S-adenosyl-L-methioninate  (EXP,ISO)
S-adenosyl-L-methionine  (EXP,ISO)
S-butyl-DL-homocysteine (S,R)-sulfoximine  (ISO)
S-nitrosoglutathione  (ISO)
SB 203580  (ISO)
SCH772984  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
silver(1+) nitrate  (ISO)
simvastatin  (ISO)
sodium arsenite  (EXP,ISO)
sodium chloride  (ISO)
sodium dichromate  (ISO)
T-2 toxin  (ISO)
tamoxifen  (EXP,ISO)
temozolomide  (ISO)
terameprocol  (ISO)
tetrachloroethene  (EXP)
tetrathiomolybdate(2-)  (ISO)
thalidomide  (ISO)
thapsigargin  (ISO)
Tiron  (EXP)
tolfenamic acid  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
Triptolide  (EXP)
triptonide  (EXP)
troglitazone  (EXP,ISO)
tunicamycin  (ISO)
tyrphostin AG 1478  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vincristine  (ISO)
vorinostat  (ISO)
wortmannin  (ISO)
zinc acetate  (ISO)
zinc atom  (EXP,ISO)
zinc dichloride  (EXP,ISO)
zinc sulfate  (ISO)
zinc(0)  (EXP,ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:1377062   PMID:1524678   PMID:1633330   PMID:1797234   PMID:1909605   PMID:1980424   PMID:1981055   PMID:1989904   PMID:7568082   PMID:8012111   PMID:8244404   PMID:8530040  
PMID:8593813   PMID:8617793   PMID:8657141   PMID:8871649   PMID:8889548   PMID:9041129   PMID:9060426   PMID:9160753   PMID:9177236   PMID:9582278   PMID:9628590   PMID:9705320  
PMID:9738004   PMID:10349636   PMID:10366853   PMID:10381567   PMID:10409740   PMID:10490658   PMID:10547281   PMID:10922068   PMID:10973950   PMID:11004506   PMID:11042159   PMID:11071760  
PMID:11076861   PMID:11230134   PMID:11532028   PMID:11745351   PMID:11777901   PMID:11855856   PMID:12004059   PMID:12054741   PMID:12089157   PMID:12119294   PMID:12220517   PMID:12239153  
PMID:12433697   PMID:12520002   PMID:12569082   PMID:12591615   PMID:12657651   PMID:12682245   PMID:12752447   PMID:12794070   PMID:12799440   PMID:12801994   PMID:12847250   PMID:12904583  
PMID:14570593   PMID:14576192   PMID:14580349   PMID:14610273   PMID:14630713   PMID:14667815   PMID:14681479   PMID:14701757   PMID:14988733   PMID:15016652   PMID:15094381   PMID:15157741  
PMID:15219855   PMID:15247247   PMID:15265983   PMID:15282343   PMID:15310743   PMID:15451065   PMID:15462672   PMID:15467729   PMID:15482850   PMID:15511642   PMID:15528196   PMID:15550398  
PMID:15589828   PMID:15601926   PMID:15618518   PMID:15650415   PMID:15663180   PMID:15688401   PMID:15741318   PMID:15817708   PMID:15820306   PMID:15936277   PMID:16021625   PMID:16052479  
PMID:16141072   PMID:16141073   PMID:16141233   PMID:16249485   PMID:16266294   PMID:16325481   PMID:16339759   PMID:16377629   PMID:16423470   PMID:16453304   PMID:16484221   PMID:16582099  
PMID:16595660   PMID:16709865   PMID:16765933   PMID:16876120   PMID:16886906   PMID:16949047   PMID:16951346   PMID:17090534   PMID:17093407   PMID:17097063   PMID:17214963   PMID:17270292  
PMID:17276355   PMID:17317039   PMID:17471507   PMID:17496155   PMID:17584888   PMID:17599098   PMID:17626016   PMID:17641042   PMID:17652337   PMID:17660393   PMID:17670746   PMID:17869213  
PMID:17961220   PMID:17967808   PMID:18053794   PMID:18192274   PMID:18249093   PMID:18287559   PMID:18388192   PMID:18417714   PMID:18424770   PMID:18434628   PMID:18440316   PMID:18458062  
PMID:18480165   PMID:18513743   PMID:18655767   PMID:18669658   PMID:18673381   PMID:18768463   PMID:18768929   PMID:18790003   PMID:18799693   PMID:18809386   PMID:18812468   PMID:18983969  
PMID:19017640   PMID:19041738   PMID:19049975   PMID:19064990   PMID:19070619   PMID:19096034   PMID:19211917   PMID:19285002   PMID:19306294   PMID:19342455   PMID:19420113   PMID:19437621  
PMID:19471099   PMID:19590177   PMID:19646513   PMID:19666599   PMID:19741146   PMID:19753117   PMID:19808779   PMID:19883626   PMID:19943855   PMID:19994725   PMID:20056610   PMID:20096375  
PMID:20138838   PMID:20150657   PMID:20152817   PMID:20157588   PMID:20207994   PMID:20362542   PMID:20375015   PMID:20412781   PMID:20424664   PMID:20478378   PMID:20529870   PMID:20540995  
PMID:20554538   PMID:20833840   PMID:20864529   PMID:20979052   PMID:21029371   PMID:21068393   PMID:21105874   PMID:21179468   PMID:21233130   PMID:21262356   PMID:21267068   PMID:21320120  
PMID:21504746   PMID:21555589   PMID:21672091   PMID:21677750   PMID:21731673   PMID:21745612   PMID:21779326   PMID:21820092   PMID:21872590   PMID:21873635   PMID:22049076   PMID:22134960  
PMID:22158040   PMID:22185379   PMID:22253285   PMID:22331133   PMID:22378045   PMID:22383952   PMID:22415975   PMID:22511764   PMID:22678117   PMID:22679019   PMID:22706977   PMID:22984509  
PMID:22988430   PMID:23112860   PMID:23139414   PMID:23159876   PMID:23201262   PMID:23250796   PMID:23341029   PMID:23376040   PMID:23383201   PMID:23463631   PMID:23558680   PMID:23651731  
PMID:23843607   PMID:23868804   PMID:23873932   PMID:23898047   PMID:24030830   PMID:24045949   PMID:24324617   PMID:24451878   PMID:24489103   PMID:24554719   PMID:24627491   PMID:24633789  
PMID:24706897   PMID:24778176   PMID:24788806   PMID:24821721   PMID:24850855   PMID:24899714   PMID:25003626   PMID:25015265   PMID:25024375   PMID:25175639   PMID:25445985   PMID:25538045  
PMID:25711369   PMID:25793500   PMID:26238476   PMID:26279143   PMID:26369286   PMID:26384464   PMID:26487428   PMID:27060138   PMID:27143785   PMID:27179789   PMID:27182621   PMID:27328306  
PMID:27384152   PMID:27889927   PMID:27918959   PMID:27959449   PMID:28107769   PMID:28257846   PMID:28343946   PMID:28420000   PMID:28939040   PMID:29091030   PMID:29137983   PMID:29263044  
PMID:29781215   PMID:30196744   PMID:30634395   PMID:30652310   PMID:30936247   PMID:30995923   PMID:31164147   PMID:31317491   PMID:31327495   PMID:31372634   PMID:31439839   PMID:31666587  
PMID:31732967   PMID:31733201   PMID:31786325   PMID:31863909   PMID:31883458   PMID:31898343   PMID:32436661   PMID:32729205   PMID:33002446   PMID:33894270   PMID:34074765   PMID:34204880  


Genomics

Comparative Map Data
Sp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3915102,314,751 - 102,344,839 (+)NCBIGRCm39mm39
GRCm39 Ensembl15102,314,578 - 102,344,839 (+)Ensembl
GRCm3815102,406,316 - 102,436,404 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl15102,406,143 - 102,436,404 (+)EnsemblGRCm38mm10GRCm38
MGSCv3715102,236,747 - 102,266,835 (+)NCBIGRCm37mm9NCBIm37
MGSCv3615102,234,362 - 102,260,713 (+)NCBImm8
Celera15104,563,277 - 104,594,207 (+)NCBICelera
Cytogenetic Map15F3NCBI
SP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1253,380,176 - 53,416,446 (+)EnsemblGRCh38hg38GRCh38
GRCh381253,380,176 - 53,416,446 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh371253,773,960 - 53,810,230 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361252,060,246 - 52,096,497 (+)NCBINCBI36hg18NCBI36
Build 341252,060,245 - 52,096,491NCBI
Celera1253,423,138 - 53,460,427 (+)NCBI
Cytogenetic Map12q13.13NCBI
HuRef1250,814,656 - 50,850,614 (+)NCBIHuRef
CHM1_11253,741,140 - 53,777,425 (+)NCBICHM1_1
Sp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.27133,541,302 - 133,571,961 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl7133,541,491 - 133,571,961 (+)Ensembl
Rnor_6.07144,014,173 - 144,044,635 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7144,014,173 - 144,044,629 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07141,805,281 - 141,836,504 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47141,164,180 - 141,194,509 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17141,240,616 - 141,265,690 (+)NCBI
Celera7129,968,890 - 129,999,257 (+)NCBICelera
RH 3.4 Map71062.1RGD
Cytogenetic Map7q36NCBI
Sp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955458644,378 - 677,441 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955458644,435 - 677,360 (+)NCBIChiLan1.0ChiLan1.0
SP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11236,122,583 - 36,158,356 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1236,127,681 - 36,158,356 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01235,338,492 - 35,374,462 (-)NCBIMhudiblu_PPA_v0panPan3
SP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1271,802,587 - 1,861,187 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl271,805,184 - 1,847,226 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2744,404,740 - 44,448,820 (+)NCBI
ROS_Cfam_1.0271,804,038 - 1,848,490 (-)NCBI
UMICH_Zoey_3.1271,823,470 - 1,867,184 (-)NCBI
UNSW_CanFamBas_1.0271,807,708 - 1,852,315 (-)NCBI
UU_Cfam_GSD_1.02744,805,663 - 44,849,851 (+)NCBI
Sp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494562,467,059 - 62,509,967 (-)NCBI
SpeTri2.0NW_00493651210,655,116 - 10,693,025 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl518,588,758 - 18,630,089 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1518,588,763 - 18,633,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2519,024,941 - 19,070,820 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11149,484,459 - 49,516,941 (+)NCBIChlSab1.1chlSab2
ChlSab1.11149,484,459 - 49,516,941 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1149,484,518 - 49,512,541 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037196,540,987 - 196,574,325 (-)NCBIVero_WHO_p1.0
Sp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249041,475,664 - 1,507,588 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH133875  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,432,044 - 102,432,239UniSTSGRCm38
MGSCv3715102,262,475 - 102,262,670UniSTSGRCm37
Celera15104,589,847 - 104,590,042UniSTS
Cytogenetic Map15F3UniSTS
AI845540  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,436,165 - 102,436,281UniSTSGRCm38
MGSCv3715102,266,596 - 102,266,712UniSTSGRCm37
Celera15104,593,968 - 104,594,084UniSTS
Cytogenetic Map15F3UniSTS
Whitehead/MRC_RH15921.04UniSTS
X60136  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,431,091 - 102,431,166UniSTSGRCm38
MGSCv3715102,261,522 - 102,261,597UniSTSGRCm37
Celera15104,588,894 - 104,588,969UniSTS
Cytogenetic Map15F3UniSTS
Whitehead_YAC15 UniSTS
UniSTS:237408  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,434,766 - 102,435,064UniSTSGRCm38
MGSCv3715102,265,197 - 102,265,495UniSTSGRCm37
Celera15104,592,569 - 104,592,867UniSTS
Cytogenetic Map15F3UniSTS
PMC114562P1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3815102,408,638 - 102,409,168UniSTSGRCm38
MGSCv3715102,239,069 - 102,239,599UniSTSGRCm37
Celera15104,566,421 - 104,566,951UniSTS
Cytogenetic Map15F3UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357526Hyplip2_mhyperlipidemia 2 (mouse)Not determined1512402117102988123Mouse
1558985Eae32_mexperimental allergic encephalomyelitis susceptibility 32 (mouse)Not determined1532578270103517472Mouse
1302074Bmd4_mbone mineral density 4 (mouse)Not determined1556323312103517472Mouse
1302197Bhr2_mbronchial hyperresponsiveness 2 (mouse)Not determined1564434485103517472Mouse
1300627Sluc26_msusceptibility to lung cancer 26 (mouse)Not determined1570461452104043685Mouse
1300726Pitm4_mprion incubation time 4 (mouse)Not determined1570465070104043685Mouse
1300648Dbsty4_mdiabesity 4 (mouse)Not determined1570465070104043685Mouse
14747011Mancz13_mmandible centroid size 13 (mouse)1572498466104043685Mouse
12791003Aath8_maortic arch atherosclerosis 8 (mouse)1573545941104043685Mouse
1300851Heal4_mwound healing/regeneration 4 (mouse)Not determined1577629711104043685Mouse
4142060W3q6_mweight 3 weeks QTL 6 (mouse)Not determined78716903102993272Mouse
1357894Epfpq3_mepididymal fat percentage QTL 3 (mouse)Not determined1578716903102993272Mouse
14928306Manh79_mmandible shape 79 (mouse)1578949676104043685Mouse
12880411V125Dq11_mvitamin D active form serum level QTL 11 (mouse)1579000000104043685Mouse
10402490Dipa5_mdrug induced psychomotor activation 5 (mouse)Not determined1579265530104043685Mouse
4141897Imrfq2_mimmune response to Factor IX QTL 2 (mouse)Not determined80011059104043685Mouse
1301284Cosz3_mcocaine seizure 3 (mouse)Not determined1580415753104043685Mouse
4141902Cia37_mcollagen induced arthritis 37 (mouse)Not determined1580987052104043685Mouse
1300974Pgia9_mproteoglycan induced arthritis 9 (mouse)Not determined1580987052104043685Mouse
4141511Gdcr1_mglycerolphosphate dehydrogenase regulator 1 (mouse)Not determined82717593104043685Mouse
1357614Bmca_mbile mucin accumulation (mouse)Not determined1585988005104043685Mouse
11530037Sluc34a_msusceptibility to lung cancer 34a (mouse)1585988005104043685Mouse
11530038Sluc34b_msusceptibility to lung cancer 34b (mouse)1585988005104043685Mouse
1301918Skull22_mskull morphology 22 (mouse)Not determined1585993114104043685Mouse
1301764Chab4_mcholesterol absorption 4 (mouse)Not determined1586751919104043685Mouse
4141581Dshv1_mdorsal hippocampal volume 1 (mouse)Not determined92890759103517472Mouse
14700689Carg5_mCandida albicans resistance gene 5 (mouse)1597800000103100000Mouse
11528547Sluc34_msusceptibility to lung cancer 34 (mouse)1597987052102988123Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:4063
Count of miRNA genes:895
Interacting mature miRNAs:1270
Transcripts:ENSMUST00000001326, ENSMUST00000163709, ENSMUST00000165837, ENSMUST00000165924, ENSMUST00000168802, ENSMUST00000169619, ENSMUST00000170042, ENSMUST00000170884
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_013672 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017316523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC137156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF022363 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF062566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK003347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF729889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466550 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CJ181598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF200003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF200004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF200005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF200006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF200007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF200008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EF200009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S79832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X60136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000001326   ⟹   ENSMUSP00000001326
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15102,314,815 - 102,344,839 (+)Ensembl
GRCm38.p6 Ensembl15102,406,380 - 102,436,404 (+)Ensembl
RefSeq Acc Id: ENSMUST00000163709   ⟹   ENSMUSP00000130747
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15102,314,768 - 102,341,114 (+)Ensembl
GRCm38.p6 Ensembl15102,406,333 - 102,432,679 (+)Ensembl
RefSeq Acc Id: ENSMUST00000165837   ⟹   ENSMUSP00000126143
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15102,315,190 - 102,317,052 (+)Ensembl
GRCm38.p6 Ensembl15102,406,755 - 102,408,617 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168802   ⟹   ENSMUSP00000127445
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15102,316,023 - 102,316,820 (+)Ensembl
GRCm38.p6 Ensembl15102,407,588 - 102,408,385 (+)Ensembl
RefSeq Acc Id: ENSMUST00000169619   ⟹   ENSMUSP00000127714
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15102,315,704 - 102,316,670 (+)Ensembl
GRCm38.p6 Ensembl15102,407,269 - 102,408,235 (+)Ensembl
RefSeq Acc Id: ENSMUST00000170884   ⟹   ENSMUSP00000129638
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl15102,314,578 - 102,316,670 (+)Ensembl
GRCm38.p6 Ensembl15102,406,143 - 102,408,235 (+)Ensembl
RefSeq Acc Id: NM_013672   ⟹   NP_038700
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915102,314,751 - 102,344,839 (+)NCBI
GRCm3815102,406,316 - 102,436,404 (+)NCBI
MGSCv3715102,236,747 - 102,266,835 (+)RGD
Celera15104,563,277 - 104,594,207 (+)RGD
cM Map15 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017316523   ⟹   XP_017172012
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3915102,315,709 - 102,344,828 (+)NCBI
GRCm3815102,407,274 - 102,436,393 (+)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_038700   ⟸   NM_013672
- UniProtKB: O89090 (UniProtKB/Swiss-Prot),   G3X8Q0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017172012   ⟸   XM_017316523
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000130747   ⟸   ENSMUST00000163709
RefSeq Acc Id: ENSMUSP00000001326   ⟸   ENSMUST00000001326
RefSeq Acc Id: ENSMUSP00000129638   ⟸   ENSMUST00000170884
RefSeq Acc Id: ENSMUSP00000126143   ⟸   ENSMUST00000165837
RefSeq Acc Id: ENSMUSP00000127445   ⟸   ENSMUST00000168802
RefSeq Acc Id: ENSMUSP00000127714   ⟸   ENSMUST00000169619

Promoters
RGD ID:6826506
Promoter ID:MM_KWN:19846
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_013672
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615102,235,786 - 102,236,667 (+)MPROMDB
RGD ID:6826505
Promoter ID:MM_KWN:19847
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   Kidney,   Liver,   Lung
Transcripts:UC007XVP.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3615102,236,916 - 102,237,452 (+)MPROMDB
RGD ID:8685204
Promoter ID:EPDNEW_M20633
Type:initiation region
Name:Sp1_1
Description:Mus musculus trans-acting transcription factor 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3815102,406,312 - 102,406,372EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:98372 AgrOrtholog
Ensembl Genes ENSMUSG00000001280 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSMUSP00000001326 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUSP00000126143 UniProtKB/TrEMBL
  ENSMUSP00000127445 UniProtKB/TrEMBL
  ENSMUSP00000127714 UniProtKB/TrEMBL
  ENSMUSP00000129638 UniProtKB/TrEMBL
  ENSMUSP00000130747 UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000001326 ENTREZGENE, UniProtKB/TrEMBL
  ENSMUST00000163709 UniProtKB/Swiss-Prot
  ENSMUST00000165837 UniProtKB/TrEMBL
  ENSMUST00000168802 UniProtKB/TrEMBL
  ENSMUST00000169619 UniProtKB/TrEMBL
  ENSMUST00000170884 UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:20683 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:98372 ENTREZGENE
NCBI Gene 20683 ENTREZGENE
Pfam zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Sp1 PhenoGen
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A2TH11_MOUSE UniProtKB/TrEMBL
  E9Q0S7_MOUSE UniProtKB/TrEMBL
  E9Q113_MOUSE UniProtKB/TrEMBL
  E9Q2V3_MOUSE UniProtKB/TrEMBL
  G3X8Q0 ENTREZGENE, UniProtKB/TrEMBL
  O89090 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary E9Q497 UniProtKB/TrEMBL
  O89087 UniProtKB/Swiss-Prot
  Q62251 UniProtKB/Swiss-Prot
  Q64167 UniProtKB/Swiss-Prot