Vps35 (VPS35 retromer complex component) - Rat Genome Database

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Gene: Vps35 (VPS35 retromer complex component) Mus musculus
Analyze
Symbol: Vps35
Name: VPS35 retromer complex component
RGD ID: 10891
MGI Page MGI
Description: Enables D1 dopamine receptor binding activity. Involved in several processes, including negative regulation of macromolecule metabolic process; neurotransmitter receptor transport, endosome to postsynaptic membrane; and positive regulation of cell communication. Located in several cellular components, including glutamatergic synapse; neuronal cell body; and postsynaptic density. Part of retromer complex. Is active in presynapse. Is expressed in several structures, including alimentary system; brain; genitourinary system; hemolymphoid system gland; and liver and biliary system. Used to study Parkinson's disease 17. Human ortholog(s) of this gene implicated in Parkinson's disease and Parkinson's disease 17. Orthologous to human VPS35 (VPS35 retromer complex component); PARTICIPATES IN altered retromer-mediated pathway; Parkinson's disease pathway; retromer-mediated pathway; INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; benzo[a]pyrene.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: AI647796; maternal embryonic message 3; maternal-embryonic 3; Mem3; vacuolar protein sorting 35; vacuolar protein sorting-associated protein 35; vesicle protein sorting 35
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,987,014 - 86,026,146 (-)NCBIGRCm39mm39
GRCm39 Ensembl885,987,021 - 86,026,431 (-)Ensembl
GRCm38885,260,385 - 85,299,517 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,260,392 - 85,299,802 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,784,291 - 87,823,396 (-)NCBIGRCm37mm9NCBIm37
MGSCv36888,150,497 - 88,189,603 (-)NCBImm8
Celera889,541,447 - 89,580,450 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
endocytic recycling  (ISO)
intracellular protein transport  (IBA)
lysosome organization  (IMP)
mitochondrial fragmentation involved in apoptotic process  (ISO)
mitochondrion to lysosome transport  (ISO)
negative regulation of cell death  (ISO)
negative regulation of gene expression  (IMP)
negative regulation of inflammatory response  (ISO)
negative regulation of late endosome to lysosome transport  (ISO)
negative regulation of lysosomal protein catabolic process  (IMP)
negative regulation of neuron death  (IMP,ISO)
negative regulation of protein homooligomerization  (IMP)
negative regulation of protein localization  (IMP)
neurotransmitter receptor transport, endosome to plasma membrane  (IMP,ISO)
neurotransmitter receptor transport, endosome to postsynaptic membrane  (IDA,IMP)
positive regulation of canonical Wnt signaling pathway  (IGI)
positive regulation of cellular protein catabolic process  (ISO)
positive regulation of dopamine biosynthetic process  (IMP)
positive regulation of dopamine receptor signaling pathway  (ISO)
positive regulation of gene expression  (IMP,ISO)
positive regulation of locomotion involved in locomotory behavior  (IMP)
positive regulation of mitochondrial fission  (ISO)
positive regulation of Wnt protein secretion  (IMP)
protein destabilization  (IMP)
protein localization to endosome  (ISO)
protein localization to organelle  (IMP)
protein transport  (IEA)
regulation of cellular protein metabolic process  (ISO)
regulation of dendritic spine maintenance  (ISO)
regulation of mitochondrion organization  (ISO)
regulation of protein stability  (ISO)
regulation of terminal button organization  (ISO)
retrograde transport, endosome to Golgi  (IBA,IC,ISO)
synapse assembly  (IDA,IMP)
transcytosis  (ISO)
vacuolar protein processing  (ISA)
vesicle-mediated transport in synapse  (IDA,IMP)
voluntary musculoskeletal movement  (IMP)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

Additional References at PubMed
PMID:8678978   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:15489334   PMID:15782199   PMID:15965486   PMID:16141072  
PMID:16141073   PMID:16190980   PMID:17114649   PMID:17239604   PMID:17696874   PMID:17983586   PMID:18160348   PMID:18480253   PMID:18656452   PMID:20923837   PMID:21040701   PMID:21873635  
PMID:22105352   PMID:23055941   PMID:23259059   PMID:23395371   PMID:23416069   PMID:23509071   PMID:23665500   PMID:24130821   PMID:24457600   PMID:24512632   PMID:24819384   PMID:24849652  
PMID:25533483   PMID:25737280   PMID:26203154   PMID:26321632   PMID:26521016   PMID:26965651   PMID:27333042   PMID:27460146   PMID:27717139   PMID:28173004   PMID:28378742   PMID:28384478  
PMID:28934248   PMID:29118110   PMID:29445238   PMID:29743203   PMID:29853629   PMID:29893854   PMID:30068389   PMID:30155515   PMID:30333137   PMID:30457570   PMID:30550785   PMID:30733594  
PMID:30842285   PMID:31771656   PMID:31907392   PMID:32088968   PMID:32291328   PMID:32325033   PMID:32631998   PMID:32968282   PMID:33135724   PMID:33239387   PMID:33257649   PMID:33261640  
PMID:33660780   PMID:33745227   PMID:34445101  


Genomics

Comparative Map Data
Vps35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,987,014 - 86,026,146 (-)NCBIGRCm39mm39
GRCm39 Ensembl885,987,021 - 86,026,431 (-)Ensembl
GRCm38885,260,385 - 85,299,517 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,260,392 - 85,299,802 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,784,291 - 87,823,396 (-)NCBIGRCm37mm9NCBIm37
MGSCv36888,150,497 - 88,189,603 (-)NCBImm8
Celera889,541,447 - 89,580,450 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.61NCBI
VPS35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl1646,656,132 - 46,689,518 (-)EnsemblGRCh38hg38GRCh38
GRCh381646,656,132 - 46,689,194 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh371646,690,044 - 46,723,090 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361645,251,090 - 45,280,645 (-)NCBINCBI36hg18NCBI36
Build 341645,251,091 - 45,280,593NCBI
Celera1631,201,751 - 31,231,306 (-)NCBI
Cytogenetic Map16q11.2NCBI
HuRef1632,582,305 - 32,611,908 (-)NCBIHuRef
CHM1_11648,100,524 - 48,130,101 (-)NCBICHM1_1
Vps35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21921,765,771 - 21,801,620 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl1921,765,749 - 21,801,618 (+)Ensembl
Rnor_6.01927,464,937 - 27,500,636 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1927,464,937 - 27,500,636 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01938,430,733 - 38,466,263 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41923,124,790 - 23,161,655 (+)NCBIRGSC3.4rn4RGSC3.4
Celera1921,625,446 - 21,661,413 (+)NCBICelera
Cytogenetic Map19q11NCBI
Vps35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955448204,991 - 240,160 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955448207,582 - 240,264 (-)NCBIChiLan1.0ChiLan1.0
VPS35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11645,815,716 - 45,846,672 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1645,817,371 - 45,846,531 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01626,924,901 - 26,954,443 (-)NCBIMhudiblu_PPA_v0panPan3
VPS35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,428,073 - 8,454,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,428,172 - 8,454,049 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha158,581,899 - 8,608,418 (+)NCBI
ROS_Cfam_1.0158,544,407 - 8,570,955 (+)NCBI
UMICH_Zoey_3.1158,373,461 - 8,399,977 (+)NCBI
UNSW_CanFamBas_1.0158,454,130 - 8,480,928 (+)NCBI
UU_Cfam_GSD_1.0158,469,932 - 8,496,696 (+)NCBI
Vps35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934959,511,247 - 59,538,597 (+)NCBI
SpeTri2.0NW_00493647550,476 - 77,797 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl637,944,127 - 37,986,203 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1637,944,099 - 37,977,091 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
VPS35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1532,509,037 - 32,539,371 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl532,508,580 - 32,539,343 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604744,064,261 - 44,095,348 (+)NCBIVero_WHO_p1.0
Vps35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624914160,483 - 188,534 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
AI647796  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38885,260,597 - 85,260,730UniSTSGRCm38
MGSCv37887,784,496 - 87,784,629UniSTSGRCm37
Celera889,541,652 - 89,541,785UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.0UniSTS
Whitehead/MRC_RH81013.82UniSTS
Vps35  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C3UniSTS
cM Map838.0UniSTS
Mem3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38885,260,529 - 85,260,693UniSTSGRCm38
MGSCv37887,784,428 - 87,784,592UniSTSGRCm37
Celera889,541,584 - 89,541,748UniSTS
Cytogenetic Map8C3UniSTS
cM Map838.0UniSTS
Mem3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8C3UniSTS
cM Map838.0UniSTS


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832016544117238700Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined834642776114837007Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83616300092728652Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837400000109600000Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)83970925694689598Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85188219185882191Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85428781788287993Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85470661488706763Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85554502889545028Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85820147992201479Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85840977692409776Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86078685094786976Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6346010797460107Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86393954797939696Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined86535776899357920Mouse
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined86560020799600347Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined870305375104305495Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined870305375104305495Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871102903105103009Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7113678390202598Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71287817123895615Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871287817123895615Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined871396181105396393Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873202495107202598Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)873400000126100000Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined875675517109675623Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined875685348109685497Mouse
1301808Nhdlq1_mnon-HDL QTL 1 (mouse)Not determined875685348109685497Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined875685348109685497Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined875685348109685497Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined878518613112518703Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879082178113082403Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88006677589014359Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881092664115092664Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)881619151115619151Mouse
1301766Desp1_mdespair 1 (mouse)Not determined884759576118759741Mouse

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:186
Count of miRNA genes:167
Interacting mature miRNAs:176
Transcripts:ENSMUST00000034131
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_022997 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134854 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF226323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK077506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK142382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK145853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160547 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK162726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK167594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK190441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK196710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK208279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK210949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK218937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC005469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC006637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  U47024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034131   ⟹   ENSMUSP00000034131
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,987,021 - 86,026,431 (-)Ensembl
GRCm38.p6 Ensembl885,260,392 - 85,299,802 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209228
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl886,015,813 - 86,026,098 (-)Ensembl
GRCm38.p6 Ensembl885,289,184 - 85,299,469 (-)Ensembl
RefSeq Acc Id: ENSMUST00000209277
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl885,996,131 - 86,001,132 (-)Ensembl
GRCm38.p6 Ensembl885,269,502 - 85,274,503 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211154
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl886,017,974 - 86,026,092 (-)Ensembl
GRCm38.p6 Ensembl885,291,345 - 85,299,463 (-)Ensembl
RefSeq Acc Id: ENSMUST00000211479
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl886,016,070 - 86,026,095 (-)Ensembl
GRCm38.p6 Ensembl885,289,441 - 85,299,466 (-)Ensembl
RefSeq Acc Id: NM_022997   ⟹   NP_075373
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39885,987,014 - 86,026,146 (-)NCBI
GRCm38885,260,385 - 85,299,517 (-)NCBI
MGSCv37887,784,291 - 87,823,396 (-)RGD
Celera889,541,447 - 89,580,450 (-)RGD
cM Map8 ENTREZGENE
Sequence:
Reference Sequences
RefSeq Acc Id: NP_075373   ⟸   NM_022997
- UniProtKB: Q9EQH3 (UniProtKB/Swiss-Prot),   Q3TRJ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034131   ⟸   ENSMUST00000034131

Promoters
RGD ID:8667753
Promoter ID:EPDNEW_M11908
Type:initiation region
Name:Vps35_1
Description:Mus musculus VPS35 retromer complex component , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38885,299,517 - 85,299,577EPDNEW
RGD ID:6843886
Promoter ID:MM_KWN:55146
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000034131,   NM_001163791,   NM_019716,   NR_028268
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36887,822,591 - 87,823,892 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1890467 AgrOrtholog
Ensembl Genes ENSMUSG00000031696 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein ENSMUSP00000034131 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034131 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps35_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:65114 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1890467 ENTREZGENE
NCBI Gene 65114 ENTREZGENE
PANTHER PTHR11099 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Vps35 PhenoGen
PIRSF Retromer_Vps35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q3TJ43_MOUSE UniProtKB/TrEMBL
  Q3TKU6_MOUSE UniProtKB/TrEMBL
  Q3TRJ1 ENTREZGENE, UniProtKB/TrEMBL
  Q3TUV7_MOUSE UniProtKB/TrEMBL
  Q3UQJ1_MOUSE UniProtKB/TrEMBL
  Q9EQH3 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q61123 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-21 Vps35  VPS35 retromer complex component    vacuolar protein sorting 35  Symbol and/or name change 5135510 APPROVED