VPS35 (VPS35 retromer complex component) - Rat Genome Database

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Gene: VPS35 (VPS35 retromer complex component) Homo sapiens
Analyze
Symbol: VPS35
Name: VPS35 retromer complex component
RGD ID: 1350372
HGNC Page HGNC:13487
Description: Enables D1 dopamine receptor binding activity. Involved in several processes, including endosomal transport; positive regulation of macromolecule metabolic process; and regulation of synapse organization. Located in several cellular components, including cytoplasmic vesicle; lysosome; and mitochondrion. Part of retromer, cargo-selective complex. Implicated in Parkinson's disease and Parkinson's disease 17.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: DKFZp434E1211; DKFZp434P1672; FLJ10752; FLJ13588; FLJ20388; hVPS35; maternal-embryonic 3; MEM3; PARK17; vacuolar protein sorting 35 homolog; vacuolar protein sorting-associated protein 35; vesicle protein sorting 35; VPS35, retromer complex component
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: VPS35P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381646,656,132 - 46,689,178 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1646,656,132 - 46,689,518 (-)EnsemblGRCh38hg38GRCh38
GRCh371646,690,044 - 46,723,090 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361645,251,090 - 45,280,645 (-)NCBINCBI36Build 36hg18NCBI36
Build 341645,251,091 - 45,280,593NCBI
Celera1631,201,751 - 31,231,306 (-)NCBICelera
Cytogenetic Map16q11.2NCBI
HuRef1632,582,305 - 32,611,908 (-)NCBIHuRef
CHM1_11648,100,524 - 48,130,101 (-)NCBICHM1_1
T2T-CHM13v2.01652,452,996 - 52,486,052 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
endocytic recycling  (IMP)
intracellular protein transport  (IBA)
lysosome organization  (IEA)
mitochondrial fragmentation involved in apoptotic process  (IMP)
mitochondrion to lysosome vesicle-mediated transport  (IMP)
modulation of chemical synaptic transmission  (IEA)
negative regulation of gene expression  (IEA)
negative regulation of inflammatory response  (IGI)
negative regulation of late endosome to lysosome transport  (IMP)
negative regulation of lysosomal protein catabolic process  (IEA)
negative regulation of protein homooligomerization  (IEA)
negative regulation of protein localization  (IEA)
neurotransmitter receptor transport, endosome to plasma membrane  (IDA,IEA)
neurotransmitter receptor transport, endosome to postsynaptic membrane  (IEA)
positive regulation of canonical Wnt signaling pathway  (IEA)
positive regulation of dopamine biosynthetic process  (IEA)
positive regulation of dopamine receptor signaling pathway  (IDA)
positive regulation of gene expression  (IDA,IEA)
positive regulation of locomotion involved in locomotory behavior  (IEA)
positive regulation of mitochondrial fission  (IMP)
positive regulation of protein catabolic process  (IGI)
positive regulation of protein localization to cell periphery  (IMP,ISS)
positive regulation of Wnt protein secretion  (IEA)
protein destabilization  (IEA)
protein localization to endosome  (IMP)
protein localization to organelle  (IEA)
protein transport  (IEA)
regulation of dendritic spine maintenance  (IMP)
regulation of macroautophagy  (TAS)
regulation of mitochondrion organization  (IGI)
regulation of postsynapse assembly  (IEA)
regulation of presynapse assembly  (ISS)
regulation of protein metabolic process  (IDA,IGI)
regulation of protein stability  (IMP)
regulation of synapse maturation  (IEA)
regulation of terminal button organization  (IMP)
retrograde transport, endosome to Golgi  (IBA,IEA,IMP,NAS)
transcytosis  (IDA)
vesicle-mediated transport in synapse  (IEA)
voluntary musculoskeletal movement  (IEA)
Wnt signaling pathway  (NAS)

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Genes associated with Parkinson's disease: regulation of autophagy and beyond. Beilina A and Cookson MR, J Neurochem. 2015 Jul 30. doi: 10.1111/jnc.13266.
2. Retromer and sorting nexins in endosomal sorting. Gallon M and Cullen PJ, Biochem Soc Trans. 2015 Feb;43(1):33-47. doi: 10.1042/BST20140290.
3. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
4. Impaired intracellular trafficking defines early Parkinson's disease. Hunn BH, etal., Trends Neurosci. 2015 Mar;38(3):178-88. doi: 10.1016/j.tins.2014.12.009. Epub 2015 Jan 29.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. The endosomal pathway in Parkinson's disease. Perrett RM, etal., Mol Cell Neurosci. 2015 May;66(Pt A):21-8. doi: 10.1016/j.mcn.2015.02.009. Epub 2015 Feb 19.
7. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
10. Cloning and characterization of human VPS35 and mouse Vps35 and mapping of VPS35 to human chromosome 16q13-q21. Zhang P, etal., Genomics 2000 Dec 1;70(2):253-7.
Additional References at PubMed
PMID:8125298   PMID:8619474   PMID:8889548   PMID:9110174   PMID:11062004   PMID:11076863   PMID:11102511   PMID:11230166   PMID:11256614   PMID:12477932   PMID:14702039   PMID:15078903  
PMID:15231748   PMID:15247922   PMID:15282546   PMID:15489334   PMID:15489336   PMID:16190980   PMID:16344560   PMID:16381901   PMID:16732284   PMID:17101778   PMID:17215244   PMID:17239604  
PMID:17353931   PMID:17616579   PMID:17620599   PMID:17891154   PMID:17897319   PMID:17916227   PMID:18029348   PMID:18160348   PMID:18193037   PMID:19056867   PMID:19322201   PMID:19531583  
PMID:19553991   PMID:19615732   PMID:19619496   PMID:19738201   PMID:19874558   PMID:20000738   PMID:20164305   PMID:20301402   PMID:20619655   PMID:20923837   PMID:21319273   PMID:21515373  
PMID:21602791   PMID:21725319   PMID:21733561   PMID:21763482   PMID:21763483   PMID:21822266   PMID:21832049   PMID:21849449   PMID:21873635   PMID:21875946   PMID:21903422   PMID:21988832  
PMID:22154191   PMID:22278960   PMID:22284051   PMID:22336192   PMID:22354992   PMID:22410496   PMID:22513087   PMID:22517097   PMID:22623428   PMID:22658674   PMID:22673036   PMID:22673115  
PMID:22719997   PMID:22801713   PMID:22863883   PMID:22891780   PMID:22939629   PMID:22991136   PMID:23125461   PMID:23166591   PMID:23261770   PMID:23331060   PMID:23376485   PMID:23408866  
PMID:23411763   PMID:23452853   PMID:23455922   PMID:23463506   PMID:23536430   PMID:23563491   PMID:23726718   PMID:24115276   PMID:24152121   PMID:24262182   PMID:24344282   PMID:24740878  
PMID:24747528   PMID:24819384   PMID:24854799   PMID:24980502   PMID:25278552   PMID:25367362   PMID:25393110   PMID:25416282   PMID:25416956   PMID:25475142   PMID:25500191   PMID:25502805  
PMID:25533483   PMID:25737280   PMID:25921289   PMID:25937119   PMID:26172538   PMID:26186194   PMID:26220253   PMID:26251041   PMID:26300542   PMID:26344197   PMID:26472760   PMID:26496610  
PMID:26511642   PMID:26514267   PMID:26547032   PMID:26618722   PMID:26638075   PMID:26831064   PMID:26947123   PMID:26965691   PMID:27025967   PMID:27262440   PMID:27342126   PMID:27385586  
PMID:27460146   PMID:27502489   PMID:27777137   PMID:27889239   PMID:27917878   PMID:27926873   PMID:28040727   PMID:28129035   PMID:28222538   PMID:28383562   PMID:28388416   PMID:28514442  
PMID:28515276   PMID:28675297   PMID:28765075   PMID:28796472   PMID:28892079   PMID:28978906   PMID:29180619   PMID:29229926   PMID:29467282   PMID:29743203   PMID:29891722   PMID:29893854  
PMID:29990993   PMID:30213940   PMID:30658672   PMID:30711629   PMID:30809309   PMID:30833792   PMID:30884312   PMID:30945288   PMID:30948266   PMID:31067453   PMID:31073040   PMID:31091453  
PMID:31267705   PMID:31515488   PMID:31536960   PMID:31586073   PMID:31995728   PMID:32071398   PMID:32296183   PMID:32460013   PMID:32521226   PMID:32540366   PMID:32694731   PMID:32737286  
PMID:32814053   PMID:32913203   PMID:33032646   PMID:33142012   PMID:33239621   PMID:33305682   PMID:33347683   PMID:33611076   PMID:33636388   PMID:33658012   PMID:33742100   PMID:33800686  
PMID:33903120   PMID:33957083   PMID:33961781   PMID:34079125   PMID:34127073   PMID:34315543   PMID:34349018   PMID:34373451   PMID:34432599   PMID:34504087   PMID:34530877   PMID:34602481  
PMID:34613918   PMID:34709727   PMID:34732716   PMID:35032548   PMID:35241646   PMID:35256949   PMID:35271311   PMID:35356984   PMID:35446349   PMID:35466426   PMID:35509820   PMID:35516420  
PMID:35575683   PMID:35676659   PMID:35690672   PMID:35696571   PMID:35766879   PMID:35831314   PMID:35831895   PMID:35944360   PMID:36057605   PMID:36114006   PMID:36168627   PMID:36180891  
PMID:36215168   PMID:36243803   PMID:36261009   PMID:36470425   PMID:36476874   PMID:36517590   PMID:36538041   PMID:36610398   PMID:36629882   PMID:36738481   PMID:36774506   PMID:37172566  
PMID:37827155   PMID:37950040   PMID:38368930   PMID:38409392   PMID:38496616  


Genomics

Comparative Map Data
VPS35
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381646,656,132 - 46,689,178 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1646,656,132 - 46,689,518 (-)EnsemblGRCh38hg38GRCh38
GRCh371646,690,044 - 46,723,090 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361645,251,090 - 45,280,645 (-)NCBINCBI36Build 36hg18NCBI36
Build 341645,251,091 - 45,280,593NCBI
Celera1631,201,751 - 31,231,306 (-)NCBICelera
Cytogenetic Map16q11.2NCBI
HuRef1632,582,305 - 32,611,908 (-)NCBIHuRef
CHM1_11648,100,524 - 48,130,101 (-)NCBICHM1_1
T2T-CHM13v2.01652,452,996 - 52,486,052 (-)NCBIT2T-CHM13v2.0
Vps35
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39885,987,014 - 86,026,146 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl885,987,021 - 86,026,431 (-)EnsemblGRCm39 Ensembl
GRCm38885,260,385 - 85,299,517 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl885,260,392 - 85,299,802 (-)EnsemblGRCm38mm10GRCm38
MGSCv37887,784,291 - 87,823,396 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36888,150,497 - 88,189,603 (-)NCBIMGSCv36mm8
Celera889,541,447 - 89,580,450 (-)NCBICelera
Cytogenetic Map8C3NCBI
cM Map841.61NCBI
Vps35
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81937,938,989 - 37,974,887 (+)NCBIGRCr8
mRatBN7.21921,765,771 - 21,801,620 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1921,765,749 - 21,801,618 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1923,455,852 - 23,491,776 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01928,650,370 - 28,686,295 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01931,613,200 - 31,649,098 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01927,464,937 - 27,500,636 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1927,464,937 - 27,500,636 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01938,430,733 - 38,466,263 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41923,124,790 - 23,161,655 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1921,625,446 - 21,661,413 (+)NCBICelera
Cytogenetic Map19q11NCBI
Vps35
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955448204,991 - 240,160 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955448207,582 - 240,264 (-)NCBIChiLan1.0ChiLan1.0
VPS35
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21856,118,897 - 56,148,460 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11662,024,010 - 62,053,586 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01626,924,901 - 26,954,443 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11645,815,716 - 45,846,672 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1645,817,371 - 45,846,531 (-)Ensemblpanpan1.1panPan2
VPS35
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1158,428,073 - 8,454,601 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl158,428,172 - 8,454,049 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha158,581,899 - 8,608,418 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0158,544,407 - 8,570,955 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl158,544,515 - 8,571,199 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1158,373,461 - 8,399,977 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0158,454,130 - 8,480,928 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0158,469,932 - 8,496,696 (+)NCBIUU_Cfam_GSD_1.0
Vps35
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934959,511,247 - 59,538,597 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647550,321 - 78,097 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647550,476 - 77,797 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VPS35
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl637,944,127 - 37,986,171 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1637,944,099 - 37,977,091 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
VPS35
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1532,509,037 - 32,539,371 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl532,508,580 - 32,539,343 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604744,064,261 - 44,095,348 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vps35
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624914160,483 - 188,490 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624914160,483 - 188,534 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in VPS35
181 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_018206.6(VPS35):c.1858G>A (p.Asp620Asn) single nucleotide variant Parkinson disease 17 [RCV000023115] Chr16:46662452 [GRCh38]
Chr16:46696364 [GRCh37]
Chr16:16q11.2
pathogenic
NM_018206.6(VPS35):c.959C>T (p.Ala320Val) single nucleotide variant Parkinson disease 17 [RCV001497950]|not provided [RCV000520871] Chr16:46674616 [GRCh38]
Chr16:46708528 [GRCh37]
Chr16:16q11.2
likely benign|uncertain significance
NM_018206.6(VPS35):c.1938= (p.His646=) single nucleotide variant Parkinson disease 17 [RCV000549249] Chr16:46662372 [GRCh38]
Chr16:46696284 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.946C>T (p.Pro316Ser) single nucleotide variant Parkinson disease 17 [RCV000576928] Chr16:46674629 [GRCh38]
Chr16:46708541 [GRCh37]
Chr16:16q11.2
uncertain significance|not provided
NM_018206.6(VPS35):c.2210C>T (p.Ala737Val) single nucleotide variant Parkinson disease 17 [RCV000577103] Chr16:46661719 [GRCh38]
Chr16:46695631 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1796A>G (p.His599Arg) single nucleotide variant Parkinson disease 17 [RCV000577279] Chr16:46663014 [GRCh38]
Chr16:46696926 [GRCh37]
Chr16:16q11.2
uncertain significance|not provided
NM_018206.6(VPS35):c.2320C>A (p.Leu774Met) single nucleotide variant Parkinson disease 17 [RCV000577307]|not provided [RCV001092924] Chr16:46660543 [GRCh38]
Chr16:46694455 [GRCh37]
Chr16:16q11.2
likely pathogenic|uncertain significance
NM_018206.6(VPS35):c.1520A>T (p.Tyr507Phe) single nucleotide variant Parkinson disease 17 [RCV000577361] Chr16:46671709 [GRCh38]
Chr16:46705621 [GRCh37]
Chr16:16q11.2
uncertain significance|not provided
NM_018206.6(VPS35):c.723T>G (p.Ile241Met) single nucleotide variant Parkinson disease 17 [RCV000577548] Chr16:46677396 [GRCh38]
Chr16:46711308 [GRCh37]
Chr16:16q11.2
uncertain significance|not provided
NM_018206.6(VPS35):c.2359G>A (p.Glu787Lys) single nucleotide variant Parkinson disease 17 [RCV000577600] Chr16:46660504 [GRCh38]
Chr16:46694416 [GRCh37]
Chr16:16q11.2
uncertain significance|not provided
GRCh38/hg38 16q11.2-12.1(chr16:46466829-52314178)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052404]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052404]|See cases [RCV000052404] Chr16:46466829..52314178 [GRCh38]
Chr16:46500741..52348090 [GRCh37]
Chr16:45058242..50905591 [NCBI36]
Chr16:16q11.2-12.1
pathogenic
GRCh38/hg38 16q11.2-12.1(chr16:46466829-51939304)x1 copy number loss See cases [RCV000053309] Chr16:46466829..51939304 [GRCh38]
Chr16:46500741..51973216 [GRCh37]
Chr16:45058242..50530717 [NCBI36]
Chr16:16q11.2-12.1
pathogenic
GRCh38/hg38 16q11.2-12.1(chr16:46466829-51673196)x1 copy number loss See cases [RCV000053310] Chr16:46466829..51673196 [GRCh38]
Chr16:46500741..51707107 [GRCh37]
Chr16:45058242..50264608 [NCBI36]
Chr16:16q11.2-12.1
pathogenic
GRCh38/hg38 16q11.2-12.1(chr16:46471520-52405956)x1 copy number loss See cases [RCV000053328] Chr16:46471520..52405956 [GRCh38]
Chr16:46505432..52439868 [GRCh37]
Chr16:45062933..50997369 [NCBI36]
Chr16:16q11.2-12.1
pathogenic
NM_018206.4(VPS35):c.1503G>A (p.Glu501=) single nucleotide variant Malignant melanoma [RCV000071131] Chr16:46671726 [GRCh38]
Chr16:46705638 [GRCh37]
Chr16:45263139 [NCBI36]
Chr16:16q11.2
not provided
NM_018206.6(VPS35):c.1576C>T (p.Arg526Cys) single nucleotide variant Parkinson disease, late-onset [RCV000082874] Chr16:46669001 [GRCh38]
Chr16:46702913 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*282_*283insAAAAAA insertion not provided [RCV002292923] Chr16:46660189..46660190 [GRCh38]
Chr16:46694101..46694102 [GRCh37]
Chr16:16q11.2
benign|likely benign
NM_018206.6(VPS35):c.1463A>G (p.Gln488Arg) single nucleotide variant Inborn genetic diseases [RCV000190799] Chr16:46671766 [GRCh38]
Chr16:46705678 [GRCh37]
Chr16:16q11.2
pathogenic|likely pathogenic
GRCh38/hg38 16q11.2-12.1(chr16:46466829-52422170)x1 copy number loss See cases [RCV000137306] Chr16:46466829..52422170 [GRCh38]
Chr16:46500741..52456082 [GRCh37]
Chr16:45058242..51013583 [NCBI36]
Chr16:16q11.2-12.1
pathogenic
GRCh38/hg38 16q11.2-12.1(chr16:46466829-52355793)x3 copy number gain See cases [RCV000137170] Chr16:46466829..52355793 [GRCh38]
Chr16:46500741..52389705 [GRCh37]
Chr16:45058242..50947206 [NCBI36]
Chr16:16q11.2-12.1
pathogenic
GRCh38/hg38 16q11.2(chr16:46471685-46767956)x3 copy number gain See cases [RCV000139506] Chr16:46471685..46767956 [GRCh38]
Chr16:46505597..46801868 [GRCh37]
Chr16:45063098..45359369 [NCBI36]
Chr16:16q11.2
likely benign
GRCh37/hg19 16q11.2-24.3(chr16:46615804-90142285)x1 copy number loss Breast ductal adenocarcinoma [RCV000207138] Chr16:46615804..90142285 [GRCh37]
Chr16:16q11.2-24.3
uncertain significance
GRCh37/hg19 16q11.2-12.1(chr16:46615804-47345238)x1 copy number loss Breast ductal adenocarcinoma [RCV000207035] Chr16:46615804..47345238 [GRCh37]
Chr16:16q11.2-12.1
uncertain significance
NM_018206.6(VPS35):c.1488T>C (p.His496=) single nucleotide variant Parkinson disease 17 [RCV000282535] Chr16:46671741 [GRCh38]
Chr16:46705653 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.-19C>T single nucleotide variant Parkinson disease 17 [RCV000284739] Chr16:46689152 [GRCh38]
Chr16:46723064 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.851G>A (p.Arg284Gln) single nucleotide variant Parkinson disease 17 [RCV000286070] Chr16:46676646 [GRCh38]
Chr16:46710558 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*617A>G single nucleotide variant Parkinson disease 17 [RCV000271411] Chr16:46659855 [GRCh38]
Chr16:46693767 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*354G>C single nucleotide variant Parkinson disease 17 [RCV000296408] Chr16:46660118 [GRCh38]
Chr16:46694030 [GRCh37]
Chr16:16q11.2
benign|uncertain significance
NM_018206.6(VPS35):c.*281CA[1] microsatellite Parkinson Disease, Dominant [RCV000298816] Chr16:46660188..46660189 [GRCh38]
Chr16:46694100..46694101 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.678C>T (p.Arg226=) single nucleotide variant Parkinson disease 17 [RCV000343168]|not provided [RCV000888476] Chr16:46678985 [GRCh38]
Chr16:46712897 [GRCh37]
Chr16:16q11.2
likely benign|uncertain significance
NM_018206.6(VPS35):c.*762dup duplication Parkinson Disease, Dominant [RCV000320706] Chr16:46659709..46659710 [GRCh38]
Chr16:46693621..46693622 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.*278_*279insCAA insertion Parkinson Disease, Dominant [RCV000264915] Chr16:46660193..46660194 [GRCh38]
Chr16:46694105..46694106 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*276A>C single nucleotide variant Parkinson disease 17 [RCV000270947] Chr16:46660196 [GRCh38]
Chr16:46694108 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.-35C>T single nucleotide variant Parkinson disease 17 [RCV000395289] Chr16:46689168 [GRCh38]
Chr16:46723080 [GRCh37]
Chr16:16q11.2
likely benign|uncertain significance
NM_018206.6(VPS35):c.*287_*288insAAAC insertion Parkinson Disease, Dominant [RCV000292989] Chr16:46660184..46660185 [GRCh38]
Chr16:46694096..46694097 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*401G>A single nucleotide variant Parkinson disease 17 [RCV000326354] Chr16:46660071 [GRCh38]
Chr16:46693983 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*281delinsAAAA indel Parkinson Disease, Dominant [RCV000396970] Chr16:46660191 [GRCh38]
Chr16:46694103 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*281delinsAAAAA indel Parkinson Disease, Dominant [RCV000304917] Chr16:46660191 [GRCh38]
Chr16:46694103 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1035G>A (p.Glu345=) single nucleotide variant Parkinson disease 17 [RCV000373439] Chr16:46674439 [GRCh38]
Chr16:46708351 [GRCh37]
Chr16:16q11.2
likely benign|conflicting interpretations of pathogenicity|uncertain significance
NM_018206.6(VPS35):c.*346G>A single nucleotide variant Parkinson disease 17 [RCV000351288] Chr16:46660126 [GRCh38]
Chr16:46694038 [GRCh37]
Chr16:16q11.2
benign|uncertain significance
NM_018206.6(VPS35):c.1912A>T (p.Met638Leu) single nucleotide variant Inborn genetic diseases [RCV004021660]|Parkinson disease 17 [RCV000374738] Chr16:46662398 [GRCh38]
Chr16:46696310 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*287dup duplication Parkinson Disease, Dominant [RCV000338377] Chr16:46660184..46660185 [GRCh38]
Chr16:46694096..46694097 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*258del deletion Parkinson Disease, Dominant [RCV000274464] Chr16:46660214 [GRCh38]
Chr16:46694126 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2241C>T (p.Ile747=) single nucleotide variant Parkinson disease 17 [RCV000878827]|not provided [RCV001558809] Chr16:46660622 [GRCh38]
Chr16:46694534 [GRCh37]
Chr16:16q11.2
benign|likely benign
NM_018206.6(VPS35):c.*761_*762dup duplication Parkinson Disease, Dominant [RCV000384542] Chr16:46659709..46659710 [GRCh38]
Chr16:46693621..46693622 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.89T>A (p.Met30Lys) single nucleotide variant Parkinson disease 17 [RCV000406026] Chr16:46683521 [GRCh38]
Chr16:46717433 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*287_*288insAAC insertion Parkinson Disease, Dominant [RCV000387294] Chr16:46660184..46660185 [GRCh38]
Chr16:46694096..46694097 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*285_*287dup duplication Parkinson Disease, Dominant [RCV000396974] Chr16:46660184..46660185 [GRCh38]
Chr16:46694096..46694097 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1145A>G (p.Lys382Arg) single nucleotide variant Parkinson disease 17 [RCV000873828]|not provided [RCV001642992] Chr16:46674329 [GRCh38]
Chr16:46708241 [GRCh37]
Chr16:16q11.2
benign|likely benign
NM_018206.6(VPS35):c.2212-218C>T single nucleotide variant not provided [RCV001575200] Chr16:46660869 [GRCh38]
Chr16:46694781 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.*380G>A single nucleotide variant Parkinson disease 17 [RCV000381008] Chr16:46660092 [GRCh38]
Chr16:46694004 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*276_*277insCAA insertion Parkinson Disease, Dominant [RCV000365405] Chr16:46660195..46660196 [GRCh38]
Chr16:46694107..46694108 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*283del deletion Parkinson Disease, Dominant [RCV000335029]|not provided [RCV001636901] Chr16:46660189 [GRCh38]
Chr16:46694101 [GRCh37]
Chr16:16q11.2
benign|uncertain significance
NM_018206.6(VPS35):c.*259_*260dup duplication Parkinson Disease, Dominant [RCV000387623] Chr16:46660211..46660212 [GRCh38]
Chr16:46694123..46694124 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_014321.4(ORC6):c.-20T>C single nucleotide variant Meier-Gorlin syndrome 3 [RCV001118968]|Meier-Gorlin syndrome [RCV000364037]|Parkinson Disease, Dominant [RCV000367122]|not specified [RCV000242816] Chr16:46689686 [GRCh38]
Chr16:46723598 [GRCh37]
Chr16:16q11.2
benign
NM_014321.4(ORC6):c.-47G>A single nucleotide variant Meier-Gorlin syndrome 3 [RCV001118967]|Meier-Gorlin syndrome [RCV000307066]|Parkinson Disease, Dominant [RCV000333503]|not specified [RCV000248011] Chr16:46689659 [GRCh38]
Chr16:46723571 [GRCh37]
Chr16:16q11.2
benign|likely benign|uncertain significance
NM_018206.6(VPS35):c.-34G>A single nucleotide variant Meier-Gorlin syndrome [RCV000270575]|Parkinson disease 17 [RCV000346763] Chr16:46689167 [GRCh38]
Chr16:46723079 [GRCh37]
Chr16:16q11.2
benign|likely benign
NM_018206.6(VPS35):c.*277_*278insCA insertion Parkinson Disease, Dominant [RCV000310783] Chr16:46660194..46660195 [GRCh38]
Chr16:46694106..46694107 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*275_*276insCAA insertion Parkinson Disease, Dominant [RCV000326041] Chr16:46660196..46660197 [GRCh38]
Chr16:46694108..46694109 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*279_*280insCAAA insertion Parkinson Disease, Dominant [RCV000359515] Chr16:46660192..46660193 [GRCh38]
Chr16:46694104..46694105 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.171G>A (p.Met57Ile) single nucleotide variant Parkinson disease 17 [RCV000577231]|not provided [RCV002225672] Chr16:46682107 [GRCh38]
Chr16:46716019 [GRCh37]
Chr16:16q11.2
likely benign|uncertain significance|not provided
GRCh37/hg19 16q11.2-24.3(chr16:46464488-90155062)x3 copy number gain See cases [RCV000446110] Chr16:46464488..90155062 [GRCh37]
Chr16:16q11.2-24.3
pathogenic
GRCh37/hg19 16q11.2(chr16:46509686-46843488)x3 copy number gain See cases [RCV000446229] Chr16:46509686..46843488 [GRCh37]
Chr16:16q11.2
uncertain significance
GRCh37/hg19 16q11.2(chr16:46503406-46842785)x3 copy number gain See cases [RCV000447579] Chr16:46503406..46842785 [GRCh37]
Chr16:16q11.2
uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3
uncertain significance
GRCh37/hg19 16p11.2-q21(chr16:34197492-64509054)x3 copy number gain See cases [RCV000511791] Chr16:34197492..64509054 [GRCh37]
Chr16:16p11.2-q21
pathogenic
NM_018206.6(VPS35):c.151G>A (p.Gly51Ser) single nucleotide variant Parkinson disease 17 [RCV000577720]|not provided [RCV002225671] Chr16:46682127 [GRCh38]
Chr16:46716039 [GRCh37]
Chr16:16q11.2
benign|likely benign|uncertain significance
NM_018206.6(VPS35):c.204G>A (p.Met68Ile) single nucleotide variant not provided [RCV000493157] Chr16:46681496 [GRCh38]
Chr16:46715408 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1570C>T (p.Arg524Trp) single nucleotide variant Parkinson disease 17 [RCV000577554] Chr16:46669007 [GRCh38]
Chr16:46702919 [GRCh37]
Chr16:16q11.2
uncertain significance|not provided
NM_018206.6(VPS35):c.1679T>C (p.Ile560Thr) single nucleotide variant Parkinson disease 17 [RCV000576953] Chr16:46663131 [GRCh38]
Chr16:46697043 [GRCh37]
Chr16:16q11.2
uncertain significance|not provided
NM_018206.6(VPS35):c.1819A>G (p.Met607Val) single nucleotide variant Parkinson disease 17 [RCV000577708] Chr16:46662991 [GRCh38]
Chr16:46696903 [GRCh37]
Chr16:16q11.2
uncertain significance|not provided
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46497599-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626429] Chr16:46497599..90354753 [GRCh37]
Chr16:16q11.2-24.3
drug response
GRCh37/hg19 16q11.2-24.3(chr16:46455960-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626435] Chr16:46455960..90354753 [GRCh37]
Chr16:16q11.2-24.3
drug response
NM_018206.6(VPS35):c.1881C>T (p.Ala627=) single nucleotide variant Parkinson disease 17 [RCV000536603]|not provided [RCV003419982] Chr16:46662429 [GRCh38]
Chr16:46696341 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.945A>T (p.Gly315=) single nucleotide variant Parkinson disease 17 [RCV000649535]|not provided [RCV001815363] Chr16:46674630 [GRCh38]
Chr16:46708542 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1391T>C (p.Val464Ala) single nucleotide variant Parkinson disease 17 [RCV000560416] Chr16:46671838 [GRCh38]
Chr16:46705750 [GRCh37]
Chr16:16q11.2
uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
NM_018206.6(VPS35):c.1313G>A (p.Cys438Tyr) single nucleotide variant Parkinson disease 17 [RCV000692928] Chr16:46672320 [GRCh38]
Chr16:46706232 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1550T>G (p.Phe517Cys) single nucleotide variant Parkinson disease 17 [RCV000702397] Chr16:46669027 [GRCh38]
Chr16:46702939 [GRCh37]
Chr16:16q11.2
uncertain significance
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3
pathogenic
NM_018206.6(VPS35):c.834T>C (p.Thr278=) single nucleotide variant Parkinson disease 17 [RCV002064753]|not provided [RCV000874086] Chr16:46676663 [GRCh38]
Chr16:46710575 [GRCh37]
Chr16:16q11.2
benign|likely benign
NC_000016.10:g.46689307C>T single nucleotide variant not provided [RCV001584952] Chr16:46689307 [GRCh38]
Chr16:46723219 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.914+96C>T single nucleotide variant not provided [RCV001567877] Chr16:46676487 [GRCh38]
Chr16:46710399 [GRCh37]
Chr16:16q11.2
likely benign
GRCh37/hg19 16q11.2-12.1(chr16:46499176-47003285)x3 copy number gain not provided [RCV000751665] Chr16:46499176..47003285 [GRCh37]
Chr16:16q11.2-12.1
benign
GRCh37/hg19 16q11.2-12.1(chr16:46531203-47074235)x3 copy number gain not provided [RCV000751666] Chr16:46531203..47074235 [GRCh37]
Chr16:16q11.2-12.1
benign
NM_018206.6(VPS35):c.506+71A>G single nucleotide variant not provided [RCV001549904] Chr16:46680600 [GRCh38]
Chr16:46714512 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1268C>T (p.Pro423Leu) single nucleotide variant Parkinson disease 17 [RCV001115899] Chr16:46672365 [GRCh38]
Chr16:46706277 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.1398G>A (p.Thr466=) single nucleotide variant Parkinson disease 17 [RCV002064743] Chr16:46671831 [GRCh38]
Chr16:46705743 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.2145A>G (p.Leu715=) single nucleotide variant Parkinson disease 17 [RCV001120833]|VPS35-related disorder [RCV003938395]|not provided [RCV003424431] Chr16:46661784 [GRCh38]
Chr16:46695696 [GRCh37]
Chr16:16q11.2
benign|likely benign
NM_018206.6(VPS35):c.1020A>G (p.Gln340=) single nucleotide variant Parkinson disease 17 [RCV000874497] Chr16:46674454 [GRCh38]
Chr16:46708366 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2007T>C (p.Ala669=) single nucleotide variant not provided [RCV000874989] Chr16:46662303 [GRCh38]
Chr16:46696215 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.915-3del deletion Parkinson disease 17 [RCV001515864]|Parkinson disease [RCV003994142] Chr16:46674663 [GRCh38]
Chr16:46708575 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.*289C>T single nucleotide variant Parkinson disease 17 [RCV001118869] Chr16:46660183 [GRCh38]
Chr16:46694095 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1420C>G (p.Gln474Glu) single nucleotide variant Parkinson disease 17 [RCV000807045] Chr16:46671809 [GRCh38]
Chr16:46705721 [GRCh37]
Chr16:16q11.2
conflicting interpretations of pathogenicity|uncertain significance
NM_018206.6(VPS35):c.-35C>G single nucleotide variant Parkinson disease 17 [RCV001118966] Chr16:46689168 [GRCh38]
Chr16:46723080 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*345T>G single nucleotide variant Parkinson disease 17 [RCV001118868] Chr16:46660127 [GRCh38]
Chr16:46694039 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2353G>C (p.Glu785Gln) single nucleotide variant Parkinson disease 17 [RCV001118873] Chr16:46660510 [GRCh38]
Chr16:46694422 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2073C>T (p.His691=) single nucleotide variant Parkinson disease 17 [RCV001120834] Chr16:46661856 [GRCh38]
Chr16:46695768 [GRCh37]
Chr16:16q11.2
uncertain significance
GRCh37/hg19 16q11.2(chr16:46503192-46708548)x3 copy number gain not provided [RCV000846795] Chr16:46503192..46708548 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1525-5G>T single nucleotide variant Parkinson disease 17 [RCV001115897] Chr16:46669057 [GRCh38]
Chr16:46702969 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1317T>C (p.Tyr439=) single nucleotide variant Parkinson disease 17 [RCV001115898] Chr16:46672316 [GRCh38]
Chr16:46706228 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2350C>A (p.Pro784Thr) single nucleotide variant Parkinson disease 17 [RCV001219052] Chr16:46660513 [GRCh38]
Chr16:46694425 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.648G>A (p.Leu216=) single nucleotide variant Parkinson disease 17 [RCV001117353] Chr16:46679015 [GRCh38]
Chr16:46712927 [GRCh37]
Chr16:16q11.2
conflicting interpretations of pathogenicity|uncertain significance
NM_018206.6(VPS35):c.1369-5T>C single nucleotide variant Parkinson disease 17 [RCV003104983] Chr16:46671865 [GRCh38]
Chr16:46705777 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.506+255T>C single nucleotide variant not provided [RCV001550265] Chr16:46680416 [GRCh38]
Chr16:46714328 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.324-211GT[13] microsatellite not provided [RCV001547323] Chr16:46681033..46681038 [GRCh38]
Chr16:46714945..46714950 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1524+115A>G single nucleotide variant not provided [RCV001617635] Chr16:46671590 [GRCh38]
Chr16:46705502 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.200-94T>A single nucleotide variant not provided [RCV001596104] Chr16:46681594 [GRCh38]
Chr16:46715506 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.323+98C>T single nucleotide variant not provided [RCV001667919] Chr16:46681279 [GRCh38]
Chr16:46715191 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.324-211GT[21] microsatellite not provided [RCV001561190] Chr16:46681032..46681033 [GRCh38]
Chr16:46714944..46714945 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.915-16dup duplication not provided [RCV001550517] Chr16:46674662..46674663 [GRCh38]
Chr16:46708574..46708575 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1524+41G>C single nucleotide variant not provided [RCV001677464] Chr16:46671664 [GRCh38]
Chr16:46705576 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.102+56T>G single nucleotide variant not provided [RCV001577608] Chr16:46683452 [GRCh38]
Chr16:46717364 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2212-188dup duplication not provided [RCV001716527] Chr16:46660820..46660821 [GRCh38]
Chr16:46694732..46694733 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.1648-24T>C single nucleotide variant not provided [RCV001609079] Chr16:46663186 [GRCh38]
Chr16:46697098 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.2211+11T>C single nucleotide variant Parkinson disease 17 [RCV001120832] Chr16:46661707 [GRCh38]
Chr16:46695619 [GRCh37]
Chr16:16q11.2
uncertain significance
Single allele duplication not provided [RCV001542388] Chr16:46385317..61223349 [GRCh38]
Chr16:16q11.2-21
pathogenic
NM_018206.6(VPS35):c.324-211GT[19] microsatellite not provided [RCV001564647] Chr16:46681032..46681033 [GRCh38]
Chr16:46714944..46714945 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.506+54T>C single nucleotide variant not provided [RCV001660799] Chr16:46680617 [GRCh38]
Chr16:46714529 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.1524+59G>A single nucleotide variant not provided [RCV001569987] Chr16:46671646 [GRCh38]
Chr16:46705558 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1647+102A>G single nucleotide variant not provided [RCV001597880] Chr16:46668828 [GRCh38]
Chr16:46702740 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.506+155G>A single nucleotide variant not provided [RCV001558826] Chr16:46680516 [GRCh38]
Chr16:46714428 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.935G>A (p.Arg312His) single nucleotide variant not provided [RCV002469717] Chr16:46674640 [GRCh38]
Chr16:46708552 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.805-265A>G single nucleotide variant not provided [RCV001659291] Chr16:46676957 [GRCh38]
Chr16:46710869 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.2212-188_2212-186dup duplication not provided [RCV001592731] Chr16:46660820..46660821 [GRCh38]
Chr16:46694732..46694733 [GRCh37]
Chr16:16q11.2
likely benign
GRCh37/hg19 16q11.2-12.1(chr16:46467497-47004071)x3 copy number gain not provided [RCV001006793] Chr16:46467497..47004071 [GRCh37]
Chr16:16q11.2-12.1
uncertain significance
NM_018206.6(VPS35):c.*283C>A single nucleotide variant Parkinson disease 17 [RCV001118870] Chr16:46660189 [GRCh38]
Chr16:46694101 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1900A>G (p.Thr634Ala) single nucleotide variant Parkinson disease 17 [RCV001120835] Chr16:46662410 [GRCh38]
Chr16:46696322 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.102+108T>C single nucleotide variant not provided [RCV001678926] Chr16:46683400 [GRCh38]
Chr16:46717312 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.2212-188_2212-187dup duplication not provided [RCV001612681] Chr16:46660820..46660821 [GRCh38]
Chr16:46694732..46694733 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.1151A>G (p.Asn384Ser) single nucleotide variant Parkinson disease 17 [RCV001061286] Chr16:46674323 [GRCh38]
Chr16:46708235 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*34A>G single nucleotide variant Parkinson disease 17 [RCV001118872] Chr16:46660438 [GRCh38]
Chr16:46694350 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.506+4A>C single nucleotide variant Parkinson disease 17 [RCV001233814] Chr16:46680667 [GRCh38]
Chr16:46714579 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1480T>A (p.Phe494Ile) single nucleotide variant Parkinson disease 17 [RCV001040151] Chr16:46671749 [GRCh38]
Chr16:46705661 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.993G>T (p.Gln331His) single nucleotide variant Parkinson disease 17 [RCV001235115] Chr16:46674582 [GRCh38]
Chr16:46708494 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1809A>T (p.Ala603=) single nucleotide variant Parkinson disease 17 [RCV001115896] Chr16:46663001 [GRCh38]
Chr16:46696913 [GRCh37]
Chr16:16q11.2
conflicting interpretations of pathogenicity|uncertain significance
NM_018206.6(VPS35):c.*161C>T single nucleotide variant Parkinson disease 17 [RCV001118871] Chr16:46660311 [GRCh38]
Chr16:46694223 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*575A>T single nucleotide variant Parkinson disease 17 [RCV001117238] Chr16:46659897 [GRCh38]
Chr16:46693809 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*422C>A single nucleotide variant Parkinson disease 17 [RCV001117239] Chr16:46660050 [GRCh38]
Chr16:46693962 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.505G>C (p.Asp169His) single nucleotide variant Parkinson disease 17 [RCV001117354] Chr16:46680672 [GRCh38]
Chr16:46714584 [GRCh37]
Chr16:16q11.2
uncertain significance
t(10;16)(q26;q11) translocation Glioma [RCV001256208] Chr10:123241693..123243211 [GRCh37]
Chr16:46717520..46722225 [GRCh37]
Chr10:10q26.13
Chr16:16q11.2
likely pathogenic
GRCh37/hg19 16q11.2-12.1(chr16:46503572-47114342)x3 copy number gain not provided [RCV001259852] Chr16:46503572..47114342 [GRCh37]
Chr16:16q11.2-12.1
uncertain significance
GRCh37/hg19 16q11.2-12.1(chr16:46503968-47312075)x3 copy number gain not provided [RCV001259853] Chr16:46503968..47312075 [GRCh37]
Chr16:16q11.2-12.1
uncertain significance
NM_018206.6(VPS35):c.2339G>A (p.Arg780Gln) single nucleotide variant Parkinson disease 17 [RCV002002038] Chr16:46660524 [GRCh38]
Chr16:46694436 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1895T>C (p.Ile632Thr) single nucleotide variant Parkinson disease 17 [RCV001321847] Chr16:46662415 [GRCh38]
Chr16:46696327 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.13C>T (p.Gln5Ter) single nucleotide variant Parkinson disease 17 [RCV001358877] Chr16:46683597 [GRCh38]
Chr16:46717509 [GRCh37]
Chr16:16q11.2
uncertain significance
NC_000016.9:g.(?_46694384)_(46731497_?)dup duplication not provided [RCV001316308] Chr16:46694384..46731497 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1371G>A (p.Val457=) single nucleotide variant Parkinson disease 17 [RCV001407450] Chr16:46671858 [GRCh38]
Chr16:46705770 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1938C>T (p.His646=) single nucleotide variant Parkinson disease 17 [RCV001515378]|not specified [RCV001529449] Chr16:46662372 [GRCh38]
Chr16:46696284 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.324-211GT[17] microsatellite not provided [RCV001675491] Chr16:46681032..46681033 [GRCh38]
Chr16:46714944..46714945 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.1369-9A>G single nucleotide variant Parkinson disease 17 [RCV001491436] Chr16:46671869 [GRCh38]
Chr16:46705781 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1525-21del deletion not provided [RCV001686364] Chr16:46669073 [GRCh38]
Chr16:46702985 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.324-211GT[18] microsatellite not provided [RCV001715868] Chr16:46681032..46681033 [GRCh38]
Chr16:46714944..46714945 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.1893C>T (p.Ile631=) single nucleotide variant Parkinson disease 17 [RCV001497615] Chr16:46662417 [GRCh38]
Chr16:46696329 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1290C>T (p.Tyr430=) single nucleotide variant Parkinson disease 17 [RCV001400255] Chr16:46672343 [GRCh38]
Chr16:46706255 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1495C>T (p.Arg499Cys) single nucleotide variant Parkinson disease 17 [RCV001870649] Chr16:46671734 [GRCh38]
Chr16:46705646 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2222A>C (p.Gln741Pro) single nucleotide variant not provided [RCV001795678] Chr16:46660641 [GRCh38]
Chr16:46694553 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.324-211GT[20] microsatellite not provided [RCV001823402] Chr16:46681032..46681033 [GRCh38]
Chr16:46714944..46714945 [GRCh37]
Chr16:16q11.2
likely benign
GRCh37/hg19 16q11.2-12.1(chr16:46503328-47004071)x3 copy number gain not provided [RCV001829059] Chr16:46503328..47004071 [GRCh37]
Chr16:16q11.2-12.1
uncertain significance
NM_018206.6(VPS35):c.110A>G (p.Asn37Ser) single nucleotide variant Parkinson disease 17 [RCV001983502] Chr16:46682168 [GRCh38]
Chr16:46716080 [GRCh37]
Chr16:16q11.2
uncertain significance
GRCh37/hg19 16q11.2(chr16:46503406-46842785) copy number gain not specified [RCV002052527] Chr16:46503406..46842785 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2074G>A (p.Gly692Arg) single nucleotide variant Parkinson disease 17 [RCV001964213] Chr16:46661855 [GRCh38]
Chr16:46695767 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.893T>C (p.Ile298Thr) single nucleotide variant not provided [RCV002052343] Chr16:46676604 [GRCh38]
Chr16:46710516 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2060G>A (p.Gly687Glu) single nucleotide variant Parkinson disease 17 [RCV002030299] Chr16:46662250 [GRCh38]
Chr16:46696162 [GRCh37]
Chr16:16q11.2
uncertain significance
NC_000016.9:g.(?_46694384)_(46755125_?)dup duplication not provided [RCV001958286] Chr16:46694384..46755125 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1262T>A (p.Phe421Tyr) single nucleotide variant Parkinson disease 17 [RCV002027976] Chr16:46672371 [GRCh38]
Chr16:46706283 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.977A>T (p.Asp326Val) single nucleotide variant Parkinson disease 17 [RCV001879491] Chr16:46674598 [GRCh38]
Chr16:46708510 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1804G>A (p.Val602Ile) single nucleotide variant Parkinson disease 17 [RCV001904655] Chr16:46663006 [GRCh38]
Chr16:46696918 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1142A>G (p.Asn381Ser) single nucleotide variant Parkinson disease 17 [RCV001880340]|not provided [RCV003426222] Chr16:46674332 [GRCh38]
Chr16:46708244 [GRCh37]
Chr16:16q11.2
uncertain significance
NC_000016.9:g.(?_46694384)_(46782105_?)dup duplication Parkinson disease 17 [RCV001919013]|not provided [RCV001943132] Chr16:46694384..46782105 [GRCh37]
Chr16:16q11.2
uncertain significance|no classifications from unflagged records
NM_018206.6(VPS35):c.4-15T>C single nucleotide variant Parkinson disease 17 [RCV002166663] Chr16:46683621 [GRCh38]
Chr16:46717533 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.914+11C>A single nucleotide variant Parkinson disease 17 [RCV002205125] Chr16:46676572 [GRCh38]
Chr16:46710484 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2068-18C>G single nucleotide variant Parkinson disease 17 [RCV002085010] Chr16:46661879 [GRCh38]
Chr16:46695791 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1557T>C (p.Ala519=) single nucleotide variant Parkinson disease 17 [RCV002210335] Chr16:46669020 [GRCh38]
Chr16:46702932 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1002A>G (p.Thr334=) single nucleotide variant Parkinson disease 17 [RCV002213332] Chr16:46674573 [GRCh38]
Chr16:46708485 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2316C>T (p.Asn772=) single nucleotide variant Parkinson disease 17 [RCV002194335] Chr16:46660547 [GRCh38]
Chr16:46694459 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2122A>C (p.Asn708His) single nucleotide variant Parkinson disease 17 [RCV002094197]|VPS35-related disorder [RCV003951171]|not provided [RCV003326614] Chr16:46661807 [GRCh38]
Chr16:46695719 [GRCh37]
Chr16:16q11.2
benign|likely benign
NM_018206.6(VPS35):c.9A>C (p.Thr3=) single nucleotide variant Parkinson disease 17 [RCV002204727] Chr16:46683601 [GRCh38]
Chr16:46717513 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.915-16T>G single nucleotide variant Parkinson disease 17 [RCV002163010] Chr16:46674676 [GRCh38]
Chr16:46708588 [GRCh37]
Chr16:16q11.2
benign|likely benign
NM_018206.6(VPS35):c.222G>A (p.Leu74=) single nucleotide variant Parkinson disease 17 [RCV002103442] Chr16:46681478 [GRCh38]
Chr16:46715390 [GRCh37]
Chr16:16q11.2
likely benign
GRCh37/hg19 16q11.2-24.3(chr16:46503968-90155062)x3 copy number gain not provided [RCV002221458] Chr16:46503968..90155062 [GRCh37]
Chr16:16q11.2-24.3
pathogenic
NM_018206.6(VPS35):c.1368+17G>A single nucleotide variant Parkinson disease 17 [RCV002142991] Chr16:46672248 [GRCh38]
Chr16:46706160 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2049G>A (p.Thr683=) single nucleotide variant Parkinson disease 17 [RCV002175712] Chr16:46662261 [GRCh38]
Chr16:46696173 [GRCh37]
Chr16:16q11.2
likely benign
NC_000016.9:g.(?_46694384)_(48258199_?)dup duplication Glycogen storage disease IXb [RCV003110959] Chr16:46694384..48258199 [GRCh37]
Chr16:16q11.2-12.1
uncertain significance
NC_000016.9:g.(?_46694384)_(46746708_?)dup duplication not provided [RCV003113917] Chr16:46694384..46746708 [GRCh37]
Chr16:16q11.2
uncertain significance
NC_000016.9:g.(?_46694384)_(46782105_?)del deletion not provided [RCV003113918] Chr16:46694384..46782105 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.267G>A (p.Arg89=) single nucleotide variant Parkinson disease 17 [RCV003121642] Chr16:46681433 [GRCh38]
Chr16:46715345 [GRCh37]
Chr16:16q11.2
likely benign
GRCh37/hg19 16q11.2-21(chr16:46503573-62203182)x3 copy number gain not provided [RCV002472562] Chr16:46503573..62203182 [GRCh37]
Chr16:16q11.2-21
pathogenic
NM_018206.6(VPS35):c.1427T>C (p.Val476Ala) single nucleotide variant Parkinson disease 17 [RCV002903975] Chr16:46671802 [GRCh38]
Chr16:46705714 [GRCh37]
Chr16:16q11.2
uncertain significance
GRCh37/hg19 16q11.2(chr16:46503407-46860107)x3 copy number gain not provided [RCV002475850] Chr16:46503407..46860107 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2212-10dup duplication Parkinson disease 17 [RCV002615604] Chr16:46660660..46660661 [GRCh38]
Chr16:46694572..46694573 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2268T>A (p.Asn756Lys) single nucleotide variant Inborn genetic diseases [RCV002817973] Chr16:46660595 [GRCh38]
Chr16:46694507 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.935G>T (p.Arg312Leu) single nucleotide variant Parkinson disease 17 [RCV002971994] Chr16:46674640 [GRCh38]
Chr16:46708552 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1191A>G (p.Glu397=) single nucleotide variant Parkinson disease 17 [RCV002909523] Chr16:46672442 [GRCh38]
Chr16:46706354 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.340G>A (p.Val114Ile) single nucleotide variant Parkinson disease 17 [RCV002820969] Chr16:46680837 [GRCh38]
Chr16:46714749 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.199+14G>T single nucleotide variant Parkinson disease 17 [RCV002889303] Chr16:46682065 [GRCh38]
Chr16:46715977 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1466G>T (p.Ser489Ile) single nucleotide variant Inborn genetic diseases [RCV002869614] Chr16:46671763 [GRCh38]
Chr16:46705675 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2067+14T>C single nucleotide variant Parkinson disease 17 [RCV002785338] Chr16:46662229 [GRCh38]
Chr16:46696141 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1477C>T (p.Arg493Cys) single nucleotide variant Parkinson disease 17 [RCV002705365]|not provided [RCV003236934] Chr16:46671752 [GRCh38]
Chr16:46705664 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1538C>A (p.Ala513Glu) single nucleotide variant Parkinson disease 17 [RCV002658959] Chr16:46669039 [GRCh38]
Chr16:46702951 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.914+16A>G single nucleotide variant Parkinson disease 17 [RCV002594652] Chr16:46676567 [GRCh38]
Chr16:46710479 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.285C>T (p.Tyr95=) single nucleotide variant Parkinson disease 17 [RCV002932288] Chr16:46681415 [GRCh38]
Chr16:46715327 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1642A>G (p.Lys548Glu) single nucleotide variant Parkinson disease 17 [RCV002932909] Chr16:46668935 [GRCh38]
Chr16:46702847 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1226dup (p.Tyr409Ter) duplication Parkinson disease 17 [RCV003057363] Chr16:46672406..46672407 [GRCh38]
Chr16:46706318..46706319 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1120G>A (p.Glu374Lys) single nucleotide variant Parkinson disease 17 [RCV002875978] Chr16:46674354 [GRCh38]
Chr16:46708266 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1716C>G (p.Ile572Met) single nucleotide variant Inborn genetic diseases [RCV002713514] Chr16:46663094 [GRCh38]
Chr16:46697006 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.106A>G (p.Lys36Glu) single nucleotide variant Parkinson disease 17 [RCV003007608] Chr16:46682172 [GRCh38]
Chr16:46716084 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2295G>C (p.Gln765His) single nucleotide variant Parkinson disease 17 [RCV002918227] Chr16:46660568 [GRCh38]
Chr16:46694480 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.103-17T>C single nucleotide variant Parkinson disease 17 [RCV002875763] Chr16:46682192 [GRCh38]
Chr16:46716104 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1541G>A (p.Arg514Gln) single nucleotide variant Parkinson disease 17 [RCV002594442] Chr16:46669036 [GRCh38]
Chr16:46702948 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.978T>C (p.Asp326=) single nucleotide variant Parkinson disease 17 [RCV003061589] Chr16:46674597 [GRCh38]
Chr16:46708509 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1447G>T (p.Asp483Tyr) single nucleotide variant Inborn genetic diseases [RCV002897937] Chr16:46671782 [GRCh38]
Chr16:46705694 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.4-18G>A single nucleotide variant Parkinson disease 17 [RCV003060174] Chr16:46683624 [GRCh38]
Chr16:46717536 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2068-19C>T single nucleotide variant Parkinson disease 17 [RCV003060520] Chr16:46661880 [GRCh38]
Chr16:46695792 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.102+4A>G single nucleotide variant Parkinson disease 17 [RCV002672184] Chr16:46683504 [GRCh38]
Chr16:46717416 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.894A>C (p.Ile298=) single nucleotide variant Parkinson disease 17 [RCV003060322] Chr16:46676603 [GRCh38]
Chr16:46710515 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.721-16G>A single nucleotide variant Parkinson disease 17 [RCV003065051] Chr16:46677414 [GRCh38]
Chr16:46711326 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1368+15A>G single nucleotide variant Parkinson disease 17 [RCV002650604] Chr16:46672250 [GRCh38]
Chr16:46706162 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.144T>C (p.Asn48=) single nucleotide variant Parkinson disease 17 [RCV002606029] Chr16:46682134 [GRCh38]
Chr16:46716046 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1802C>T (p.Thr601Ile) single nucleotide variant Inborn genetic diseases [RCV003220550] Chr16:46663008 [GRCh38]
Chr16:46696920 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_014321.4(ORC6):c.4G>A (p.Gly2Arg) single nucleotide variant not provided [RCV003218916] Chr16:46689709 [GRCh38]
Chr16:46723621 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.915-120_915-117del deletion not provided [RCV003324925] Chr16:46674777..46674780 [GRCh38]
Chr16:46708689..46708692 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.199+8T>C single nucleotide variant Parkinson disease 17 [RCV003641084]|not provided [RCV003326941] Chr16:46682071 [GRCh38]
Chr16:46715983 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.1161T>G (p.His387Gln) single nucleotide variant Inborn genetic diseases [RCV003367371] Chr16:46672472 [GRCh38]
Chr16:46706384 [GRCh37]
Chr16:16q11.2
uncertain significance
GRCh37/hg19 16q11.2(chr16:46503407-46972876)x3 copy number gain not provided [RCV003485113] Chr16:46503407..46972876 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.*282_*283insAAAAAAA insertion not provided [RCV003419315] Chr16:46660189..46660190 [GRCh38]
Chr16:46694101..46694102 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.3+24A>G single nucleotide variant not provided [RCV003419317] Chr16:46689107 [GRCh38]
Chr16:46723019 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.696T>C (p.Gly232=) single nucleotide variant not provided [RCV003419316] Chr16:46678967 [GRCh38]
Chr16:46712879 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1327A>G (p.Asn443Asp) single nucleotide variant VPS35-related disorder [RCV003417139] Chr16:46672306 [GRCh38]
Chr16:46706218 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1795C>G (p.His599Asp) single nucleotide variant Parkinson disease 17 [RCV003529255] Chr16:46663015 [GRCh38]
Chr16:46696927 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.100C>T (p.Leu34=) single nucleotide variant Parkinson disease 17 [RCV003529218] Chr16:46683510 [GRCh38]
Chr16:46717422 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2181T>C (p.Tyr727=) single nucleotide variant Parkinson disease 17 [RCV003529069] Chr16:46661748 [GRCh38]
Chr16:46695660 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.762G>A (p.Arg254=) single nucleotide variant Parkinson disease 17 [RCV003529105] Chr16:46677357 [GRCh38]
Chr16:46711269 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1803A>G (p.Thr601=) single nucleotide variant Parkinson disease 17 [RCV003529129] Chr16:46663007 [GRCh38]
Chr16:46696919 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2061G>C (p.Gly687=) single nucleotide variant Parkinson disease 17 [RCV003529173] Chr16:46662249 [GRCh38]
Chr16:46696161 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.883G>A (p.Val295Met) single nucleotide variant Parkinson disease 17 [RCV003826438] Chr16:46676614 [GRCh38]
Chr16:46710526 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1291_1292delinsTT (p.Glu431Leu) indel Parkinson disease 17 [RCV003833121] Chr16:46672341..46672342 [GRCh38]
Chr16:46706253..46706254 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.942T>C (p.Asp314=) single nucleotide variant Parkinson disease 17 [RCV003640864] Chr16:46674633 [GRCh38]
Chr16:46708545 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.3+17C>T single nucleotide variant Parkinson disease 17 [RCV003641400] Chr16:46689114 [GRCh38]
Chr16:46723026 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1331T>C (p.Val444Ala) single nucleotide variant Parkinson disease 17 [RCV003641457] Chr16:46672302 [GRCh38]
Chr16:46706214 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1537G>C (p.Ala513Pro) single nucleotide variant Parkinson disease 17 [RCV003641503] Chr16:46669040 [GRCh38]
Chr16:46702952 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1277A>C (p.Glu426Ala) single nucleotide variant Parkinson disease 17 [RCV003860866] Chr16:46672356 [GRCh38]
Chr16:46706268 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1119A>G (p.Leu373=) single nucleotide variant Parkinson disease 17 [RCV003640390] Chr16:46674355 [GRCh38]
Chr16:46708267 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1369-12C>T single nucleotide variant Parkinson disease 17 [RCV003871974] Chr16:46671872 [GRCh38]
Chr16:46705784 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.2364G>T (p.Gly788=) single nucleotide variant Parkinson disease 17 [RCV003870481] Chr16:46660499 [GRCh38]
Chr16:46694411 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1304G>A (p.Ser435Asn) single nucleotide variant Parkinson disease 17 [RCV003871181] Chr16:46672329 [GRCh38]
Chr16:46706241 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1482C>T (p.Phe494=) single nucleotide variant Parkinson disease 17 [RCV003642256] Chr16:46671747 [GRCh38]
Chr16:46705659 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1586T>A (p.Leu529Gln) single nucleotide variant Parkinson disease 17 [RCV003640557] Chr16:46668991 [GRCh38]
Chr16:46702903 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.915-17G>T single nucleotide variant Parkinson disease 17 [RCV003642190] Chr16:46674677 [GRCh38]
Chr16:46708589 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.755A>G (p.Asn252Ser) single nucleotide variant Parkinson disease 17 [RCV003640675] Chr16:46677364 [GRCh38]
Chr16:46711276 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1194C>T (p.Leu398=) single nucleotide variant Parkinson disease 17 [RCV003640793] Chr16:46672439 [GRCh38]
Chr16:46706351 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.507-14C>G single nucleotide variant Parkinson disease 17 [RCV003641616] Chr16:46679170 [GRCh38]
Chr16:46713082 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.265A>T (p.Arg89Trp) single nucleotide variant VPS35-related disorder [RCV003901981] Chr16:46681435 [GRCh38]
Chr16:46715347 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.831G>A (p.Gln277=) single nucleotide variant VPS35-related disorder [RCV003923818] Chr16:46676666 [GRCh38]
Chr16:46710578 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.915-4_915-3del deletion VPS35-related disorder [RCV003937195] Chr16:46674663..46674664 [GRCh38]
Chr16:46708575..46708576 [GRCh37]
Chr16:16q11.2
benign
NM_018206.6(VPS35):c.103-4G>A single nucleotide variant VPS35-related disorder [RCV003909544] Chr16:46682179 [GRCh38]
Chr16:46716091 [GRCh37]
Chr16:16q11.2
likely benign
NM_018206.6(VPS35):c.1467C>G (p.Ser489Arg) single nucleotide variant Inborn genetic diseases [RCV004482804] Chr16:46671762 [GRCh38]
Chr16:46705674 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.1963C>G (p.Leu655Val) single nucleotide variant Inborn genetic diseases [RCV004482805] Chr16:46662347 [GRCh38]
Chr16:46696259 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2048C>T (p.Thr683Met) single nucleotide variant Inborn genetic diseases [RCV004482806] Chr16:46662262 [GRCh38]
Chr16:46696174 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.2355A>C (p.Glu785Asp) single nucleotide variant Inborn genetic diseases [RCV004482807] Chr16:46660508 [GRCh38]
Chr16:46694420 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.413G>A (p.Arg138His) single nucleotide variant Inborn genetic diseases [RCV004482808] Chr16:46680764 [GRCh38]
Chr16:46714676 [GRCh37]
Chr16:16q11.2
uncertain significance
NM_018206.6(VPS35):c.850C>T (p.Arg284Trp) single nucleotide variant Inborn genetic diseases [RCV004482809] Chr16:46676647 [GRCh38]
Chr16:46710559 [GRCh37]
Chr16:16q11.2
uncertain significance
NC_000016.9:g.(?_46694384)_(46764630_?)dup duplication not provided [RCV004582904] Chr16:46694384..46764630 [GRCh37]
Chr16:16q11.2
uncertain significance
NC_000016.9:g.(?_46694384)_(46743603_?)dup duplication not provided [RCV004582903] Chr16:46694384..46743603 [GRCh37]
Chr16:16q11.2
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3573
Count of miRNA genes:1256
Interacting mature miRNAs:1567
Transcripts:ENST00000299138, ENST00000561713, ENST00000562420, ENST00000563884, ENST00000563984, ENST00000565228, ENST00000568191, ENST00000568612, ENST00000568642, ENST00000568784, ENST00000569950
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH79844  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371646,693,598 - 46,693,780UniSTSGRCh37
Build 361645,251,099 - 45,251,281RGDNCBI36
Celera1631,201,760 - 31,201,942RGD
Cytogenetic Map16q12UniSTS
HuRef1632,582,314 - 32,582,496UniSTS
D16S3222  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371646,694,286 - 46,694,402UniSTSGRCh37
Build 361645,251,787 - 45,251,903RGDNCBI36
Celera1631,202,449 - 31,202,565UniSTS
Celera795,368,672 - 95,368,788RGD
Cytogenetic Map16q12UniSTS
HuRef1632,583,006 - 32,583,122UniSTS
Whitehead-YAC Contig Map16 UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2398 2555 1402 333 1812 174 3909 1540 3236 367 1451 1607 175 1 1201 2340 6 2
Low 41 436 324 291 139 291 448 657 498 52 9 6 3 448
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_029970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005256045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011523227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313466 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054313467 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC007225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC012186 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF086051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF175265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF183418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF186382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF191298 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK000395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK023650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK223218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL136888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL512769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY007112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC002414 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC010362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041367 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC093036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BM971213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ574179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU621624 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB049686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000299138   ⟹   ENSP00000299138
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,656,132 - 46,689,178 (-)Ensembl
Ensembl Acc Id: ENST00000562420
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,661,827 - 46,669,214 (-)Ensembl
Ensembl Acc Id: ENST00000563884
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,680,675 - 46,681,956 (-)Ensembl
Ensembl Acc Id: ENST00000563984
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,682,882 - 46,689,180 (-)Ensembl
Ensembl Acc Id: ENST00000565228
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,676,578 - 46,677,686 (-)Ensembl
Ensembl Acc Id: ENST00000568191
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,681,756 - 46,683,607 (-)Ensembl
Ensembl Acc Id: ENST00000568612   ⟹   ENSP00000461469
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,680,687 - 46,689,151 (-)Ensembl
Ensembl Acc Id: ENST00000568642
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,672,418 - 46,679,043 (-)Ensembl
Ensembl Acc Id: ENST00000568784   ⟹   ENSP00000456274
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,659,677 - 46,689,147 (-)Ensembl
Ensembl Acc Id: ENST00000569950
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,676,505 - 46,689,518 (-)Ensembl
Ensembl Acc Id: ENST00000640313   ⟹   ENSP00000491212
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,682,643 - 46,683,606 (-)Ensembl
Ensembl Acc Id: ENST00000647959   ⟹   ENSP00000497702
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1646,658,077 - 46,689,194 (-)Ensembl
RefSeq Acc Id: NM_018206   ⟹   NP_060676
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381646,656,132 - 46,689,178 (-)NCBI
GRCh371646,693,589 - 46,723,144 (-)ENTREZGENE
GRCh371646,693,589 - 46,723,144 (-)NCBI
Build 361645,251,090 - 45,280,645 (-)NCBI Archive
HuRef1632,582,305 - 32,611,908 (-)ENTREZGENE
CHM1_11648,098,826 - 48,130,101 (-)NCBI
T2T-CHM13v2.01652,452,996 - 52,486,052 (-)NCBI
Sequence:
RefSeq Acc Id: XM_005256045   ⟹   XP_005256102
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381646,656,132 - 46,683,581 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011523227   ⟹   XP_011521529
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381646,656,132 - 46,689,178 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054313466   ⟹   XP_054169441
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01652,452,996 - 52,485,212 (-)NCBI
RefSeq Acc Id: XM_054313467   ⟹   XP_054169442
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01652,452,996 - 52,480,455 (-)NCBI
RefSeq Acc Id: NP_060676   ⟸   NM_018206
- UniProtKB: Q9NX80 (UniProtKB/Swiss-Prot),   Q9NVG2 (UniProtKB/Swiss-Prot),   Q9NRS7 (UniProtKB/Swiss-Prot),   Q9H8J0 (UniProtKB/Swiss-Prot),   Q9H4P3 (UniProtKB/Swiss-Prot),   Q9H096 (UniProtKB/Swiss-Prot),   Q9H016 (UniProtKB/Swiss-Prot),   Q561W2 (UniProtKB/Swiss-Prot),   Q9NZK2 (UniProtKB/Swiss-Prot),   Q96QK1 (UniProtKB/Swiss-Prot),   Q53FR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005256102   ⟸   XM_005256045
- Peptide Label: isoform X2
- UniProtKB: Q53FR4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011521529   ⟸   XM_011523227
- Peptide Label: isoform X1
- UniProtKB: Q53FR4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000299138   ⟸   ENST00000299138
Ensembl Acc Id: ENSP00000491212   ⟸   ENST00000640313
Ensembl Acc Id: ENSP00000456274   ⟸   ENST00000568784
Ensembl Acc Id: ENSP00000461469   ⟸   ENST00000568612
Ensembl Acc Id: ENSP00000497702   ⟸   ENST00000647959
RefSeq Acc Id: XP_054169441   ⟸   XM_054313466
- Peptide Label: isoform X1
- UniProtKB: Q53FR4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054169442   ⟸   XM_054313467
- Peptide Label: isoform X2
- UniProtKB: Q53FR4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96QK1-F1-model_v2 AlphaFold Q96QK1 1-796 view protein structure

Promoters
RGD ID:6850908
Promoter ID:EP73250
Type:initiation region
Name:HS_VPS35
Description:Vacuolar protein sorting 35 (yeast).
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 361645,280,582 - 45,280,642EPD
RGD ID:6793619
Promoter ID:HG_KWN:23719
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:K562
Transcripts:NM_014321,   OTTHUMT00000255742,   UC002EEE.1,   UC002EEG.1,   UC010CBE.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361645,281,041 - 45,281,592 (-)MPROMDB
RGD ID:7232129
Promoter ID:EPDNEW_H21810
Type:initiation region
Name:VPS35_1
Description:VPS35, retromer complex component
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381646,689,169 - 46,689,229EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:13487 AgrOrtholog
COSMIC VPS35 COSMIC
Ensembl Genes ENSG00000069329 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000299138 ENTREZGENE
  ENST00000299138.12 UniProtKB/Swiss-Prot
  ENST00000568612.5 UniProtKB/TrEMBL
  ENST00000568784.6 UniProtKB/TrEMBL
  ENST00000647959.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.660 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000069329 GTEx
HGNC ID HGNC:13487 ENTREZGENE
Human Proteome Map VPS35 Human Proteome Map
InterPro ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Vps35_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:55737 UniProtKB/Swiss-Prot
NCBI Gene 55737 ENTREZGENE
OMIM 601501 OMIM
PANTHER PTHR11099 UniProtKB/Swiss-Prot
  VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  VACUOLAR SORTING PROTEIN 35 UniProtKB/TrEMBL
Pfam Vps35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA37783 PharmGKB
PIRSF Retromer_Vps35 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP ARM repeat UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt A0A3B3ITD4_HUMAN UniProtKB/TrEMBL
  H3BRJ7_HUMAN UniProtKB/TrEMBL
  I3L4S0_HUMAN UniProtKB/TrEMBL
  Q53FR4 ENTREZGENE, UniProtKB/TrEMBL
  Q561W2 ENTREZGENE
  Q96QK1 ENTREZGENE
  Q9H016 ENTREZGENE
  Q9H096 ENTREZGENE
  Q9H4P3 ENTREZGENE
  Q9H8J0 ENTREZGENE
  Q9NRS7 ENTREZGENE
  Q9NVG2 ENTREZGENE
  Q9NX80 ENTREZGENE
  Q9NZK2 ENTREZGENE
  VPS35_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q561W2 UniProtKB/Swiss-Prot
  Q9H016 UniProtKB/Swiss-Prot
  Q9H096 UniProtKB/Swiss-Prot
  Q9H4P3 UniProtKB/Swiss-Prot
  Q9H8J0 UniProtKB/Swiss-Prot
  Q9NRS7 UniProtKB/Swiss-Prot
  Q9NVG2 UniProtKB/Swiss-Prot
  Q9NX80 UniProtKB/Swiss-Prot
  Q9NZK2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-01-29 VPS35  VPS35 retromer complex component  VPS35  VPS35, retromer complex component  Symbol and/or name change 5135510 APPROVED
2016-04-04 VPS35  VPS35 retromer complex component  VPS35  VPS35, retromer complex component  Symbol and/or name change 5135510 APPROVED
2015-06-30 VPS35  VPS35 retromer complex component  VPS35  vacuolar protein sorting 35 homolog (S. cerevisiae)  Symbol and/or name change 5135510 APPROVED