Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:mRNA 5'-splice site recognition
go back to main search page
Accession:GO:0000395 term browser browse the term
Definition:Recognition of the intron 5'-splice site by components of the assembling spliceosome.
Comment:Note that this step represents formation of the Commitment Complex (CC, in yeast) or the E complex (mammalian).
Synonyms:exact_synonym: nuclear mRNA 5'-splice site recognition
 narrow_synonym: U12-type nuclear mRNA 5' splice site recognition;   U2-type nuclear mRNA 5' splice site recognition;   spliceosomal CC complex biosynthesis;   spliceosomal CC complex formation;   spliceosomal E complex biosynthesis;   spliceosomal E complex formation;   spliceosomal commitment complex biosynthesis;   spliceosomal commitment complex formation
 alt_id: GO:0000368;   GO:0000369

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
mRNA 5'-splice site recognition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prpf39 pre-mRNA processing factor 39 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936583:4,162,381...4,194,615
Ensembl chrNW_004936583:4,161,945...4,194,699 		JBrowse link
G Psip1 PC4 and SRSF1 interacting protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936539:8,894,285...8,940,831
Ensembl chrNW_004936539:8,892,841...8,940,871 		JBrowse link
G Sfswap splicing factor SWAP involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8940107) Ensembl
TreeGrafter
MGI		 PMID:8940107 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936660:2,055,180...2,121,008
Ensembl chrNW_004936660:2,054,978...2,121,279 		JBrowse link
G Snrpc small nuclear ribonucleoprotein polypeptide C involved_in IEA UniProt
TreeGrafter		 GO_REF:0000104 GO_REF:0000118 NCBI chrNW_004936476:24,371,268...24,389,355
Ensembl chrNW_004936476:24,368,521...24,389,596 		JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:5,055,258...5,059,118
Ensembl chrNW_004936490:5,055,253...5,059,116 		JBrowse link
G Srsf12 serine and arginine rich splicing factor 12 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936510:3,077,940...3,095,985
Ensembl chrNW_004936510:3,077,892...3,095,832 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15971
    cellular process 15075
      cellular component organization or biogenesis 6484
        cellular component biogenesis 3212
          ribonucleoprotein complex biogenesis 429
            protein-RNA complex assembly 168
              mRNA splice site recognition 27
                mRNA 5'-splice site recognition 6
                  alignment of 3' and 5' splice sites of mRNA 0
Path 2
Term Annotations click to browse term
  biological_process 15971
    metabolic process 9633
      organic substance metabolic process 9208
        organic cyclic compound metabolic process 5208
          nucleobase-containing compound metabolic process 4758
            nucleic acid metabolic process 4278
              RNA metabolic process 3755
                RNA processing 839
                  RNA splicing 367
                    RNA splicing, via transesterification reactions 290
                      RNA splicing, via transesterification reactions with bulged adenosine as nucleophile 290
                        mRNA splicing, via spliceosome 290
                          spliceosomal complex assembly 48
                            mRNA splice site recognition 27
                              mRNA 5'-splice site recognition 6
                                alignment of 3' and 5' splice sites of mRNA 0
paths to the root