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intraciliary retrograde transport - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:intraciliary retrograde transport
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Accession:GO:0035721 term browser browse the term
Definition:The directed movement of large protein complexes along microtubules from the tip of a cilium (also called flagellum) toward the cell body, mediated by motor proteins.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent.
Synonyms:exact_synonym: intraflagellar retrograde transport

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intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cilk1 ciliogenesis associated kinase 1 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:25243405)		 UniProt
Ensembl
RGD		 PMID:25243405 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:78,984,258...79,042,691 		JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 GO_REF:0000033
MGI:4359237 (PMID:18488998)
GO_REF:0000107		 GO_Central
RGD
Ensembl		 PMID:18488998 GO_REF:0000033 GO_REF:0000107 NCBI chr 8:12,473,955...12,697,075
Ensembl chr 8:4,189,257...4,412,183 		JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO
IEA		 (PMID:29742051), (PMID:30649997)
GO_REF:0000107		 RGD
Ensembl		 PMID:29742051 PMID:30649997 GO_REF:0000107 NCBI chr 6:143,276,441...143,333,006
Ensembl chr 6:137,133,418...137,188,719 		JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 involved_in ISO
IEA		 (PMID:29742051), (PMID:30649997)
(PMID:28379358)
GO_REF:0000107		 RGD
Ensembl		 PMID:28379358 PMID:29742051 PMID:30649997 GO_REF:0000107 NCBI chr 3:13,306,039...13,322,121
Ensembl chr 3:13,306,039...13,322,121 		JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 involved_in IEA
IBA		 GO_REF:0000002
GO_REF:0000033		 InterPro
GO_Central		 GO_REF:0000002 GO_REF:0000033 NCBI chr 6:15,745,350...15,778,166
Ensembl chr 6:9,992,541...10,025,336 		JBrowse link
G Dynll1 dynein light chain LC8-type 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
MGI:4368846 (PMID:25294941)		 GO_Central
RGD		 PMID:25294941 GO_REF:0000033 NCBI chr12:46,945,291...46,976,867
Ensembl chr12:41,312,367...41,314,741 		JBrowse link
G Dynll1l dynein light chain LC8-type 1 like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:1,492,788...1,493,464
Ensembl chr10:1,492,893...1,493,171 		JBrowse link
G Dynll1l2 dynein light chain LC8-type 1 like 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:80,321,783...80,322,046
Ensembl chr 8:80,321,777...80,322,094
Ensembl chr 8:80,321,777...80,322,094 		JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO (PMID:29742051) RGD PMID:29742051 NCBI chr11:68,359,138...68,367,573
Ensembl chr11:68,358,263...68,367,499 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in IBA
ISO		 GO_REF:0000033
(PMID:21209331)		 GO_Central
RGD		 PMID:21209331 GO_REF:0000033 NCBI chr 4:150,577,525...150,648,052
Ensembl chr 4:148,905,046...148,975,458 		JBrowse link
G Ift140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within		 ISO
IEA
IBA		 (PMID:22503633)
GO_REF:0000107
MGI:4458412 (PMID:24009529)
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:22503633 PMID:24009529 GO_REF:0000033 GO_REF:0000107 NCBI chr10:14,537,134...14,624,926
Ensembl chr10:14,032,648...14,120,433 		JBrowse link
G Ift43 intraflagellar transport 43 involved_in ISO
IBA
IEA		 (PMID:21378380)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:21378380 GO_REF:0000033 GO_REF:0000107 NCBI chr 6:111,460,689...111,537,224
Ensembl chr 6:105,729,792...105,806,257 		JBrowse link
G Ttc21a tetratricopeptide repeat domain 21A involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:119,667,044...119,702,028
Ensembl chr 8:119,666,933...119,702,456 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 GO_REF:0000033
GO_REF:0000107
MGI:2152544|MGI:2669525|MGI:5587034 (PMID:18327258), (PMID:19732765), (PMID:27482817)		 GO_Central
Ensembl
RGD		 PMID:18327258 PMID:19732765 PMID:27482817 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:71,269,425...71,343,936
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within
involved_in		 ISO
IBA
IEA		 (PMID:20889716)
GO_REF:0000033
GO_REF:0000002
GO_REF:0000107		 RGD
GO_Central
InterPro
Ensembl		 PMID:20889716 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,042,478...43,106,288 		JBrowse link
G Wdr35 WD repeat domain 35 acts_upstream_of_or_within
involved_in		 ISO
IEA
IBA		 (PMID:20889716)
GO_REF:0000107
GO_REF:0000033
GO_REF:0000104		 RGD
Ensembl
GO_Central
UniProt		 PMID:20889716 GO_REF:0000033 GO_REF:0000104 GO_REF:0000107 NCBI chr 6:37,490,557...37,550,391
Ensembl chr 6:31,771,360...31,831,029 		JBrowse link
regulation of intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO (PMID:26044572) RGD PMID:26044572 NCBI chr11:68,359,138...68,367,573
Ensembl chr11:68,358,263...68,367,499 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in ISO
IEA		 (PMID:27932497)
GO_REF:0000107		 RGD
Ensembl		 PMID:27932497 GO_REF:0000107 NCBI chr 3:71,269,425...71,343,936
Ensembl chr 3:50,861,367...50,935,903 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    localization 5739
      protein-containing complex localization 284
        intraciliary transport 46
          intraciliary retrograde transport 16
            negative regulation of intraciliary retrograde transport 0
            positive regulation of intraciliary retrograde transport 0
            regulation of intraciliary retrograde transport + 2
Path 2
Term Annotations click to browse term
  biological_process 20567
    cellular process 19557
      cellular localization 3705
        establishment of localization in cell 2162
          intracellular transport 1406
            cytoskeleton-dependent intracellular transport 209
              transport along microtubule 188
                intraciliary transport 46
                  intraciliary retrograde transport 16
                    negative regulation of intraciliary retrograde transport 0
                    positive regulation of intraciliary retrograde transport 0
                    regulation of intraciliary retrograde transport + 2
paths to the root