Ift43 (intraflagellar transport 43) - Rat Genome Database

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Gene: Ift43 (intraflagellar transport 43) Rattus norvegicus
Analyze
Symbol: Ift43
Name: intraflagellar transport 43
RGD ID: 1307392
Description: Predicted to be involved in cilium assembly and intraciliary retrograde transport. Predicted to be located in centriolar satellite and centriole. Predicted to be part of intraciliary transport particle A. Predicted to be active in cilium. Human ortholog(s) of this gene implicated in cranioectodermal dysplasia 3; retinitis pigmentosa 81; and short-rib thoracic dysplasia 18 with polydactyly. Orthologous to human IFT43 (intraflagellar transport 43); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; amphetamine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC299209; intraflagellar transport 43 homolog; intraflagellar transport 43 homolog (Chlamydomonas); intraflagellar transport protein 43 homolog; LOC299209; RGD1307392; similar to 1700019E19Rik protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26105,729,734 - 105,806,257 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl6105,729,792 - 105,806,257 (+)Ensembl
Rnor_6.06109,939,323 - 110,016,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6109,939,345 - 110,016,644 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06119,247,640 - 119,323,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46110,199,027 - 110,276,696 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16110,199,475 - 110,280,229 (+)NCBI
Celera6103,556,375 - 103,632,887 (+)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

Additional References at PubMed
PMID:20889716   PMID:21378380   PMID:25243405   PMID:27932497  


Genomics

Comparative Map Data
Ift43
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26105,729,734 - 105,806,257 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl6105,729,792 - 105,806,257 (+)Ensembl
Rnor_6.06109,939,323 - 110,016,646 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6109,939,345 - 110,016,644 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06119,247,640 - 119,323,933 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46110,199,027 - 110,276,696 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16110,199,475 - 110,280,229 (+)NCBI
Celera6103,556,375 - 103,632,887 (+)NCBICelera
Cytogenetic Map6q31NCBI
IFT43
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381475,985,763 - 76,084,073 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1475,902,136 - 76,084,585 (+)EnsemblGRCh38hg38GRCh38
GRCh371476,452,106 - 76,550,416 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361475,521,849 - 75,619,845 (+)NCBINCBI36hg18NCBI36
Celera1456,490,240 - 56,588,245 (+)NCBI
Cytogenetic Map14q24.3NCBI
HuRef1456,620,770 - 56,718,964 (+)NCBIHuRef
CHM1_11476,389,900 - 76,488,172 (+)NCBICHM1_1
T2T-CHM13v2.01470,194,954 - 70,293,259 (+)NCBI
Ift43
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391286,129,335 - 86,209,233 (+)NCBIGRCm39mm39
GRCm39 Ensembl1286,129,315 - 86,209,233 (+)Ensembl
GRCm381286,082,561 - 86,162,459 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1286,082,541 - 86,162,459 (+)EnsemblGRCm38mm10GRCm38
MGSCv371287,423,513 - 87,503,406 (+)NCBIGRCm37mm9NCBIm37
MGSCv361286,971,666 - 87,051,561 (+)NCBImm8
Celera1287,542,676 - 87,622,440 (+)NCBICelera
Cytogenetic Map12D2NCBI
Ift43
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543858,272 - 144,730 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543858,503 - 144,675 (+)NCBIChiLan1.0ChiLan1.0
IFT43
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11475,387,742 - 75,485,904 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1475,387,742 - 75,485,506 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01456,544,333 - 56,642,312 (+)NCBIMhudiblu_PPA_v0panPan3
IFT43
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1848,949,740 - 49,031,614 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl848,949,822 - 49,031,608 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha848,632,374 - 48,714,286 (+)NCBI
ROS_Cfam_1.0849,173,992 - 49,256,041 (+)NCBI
ROS_Cfam_1.0 Ensembl849,174,078 - 49,255,994 (+)Ensembl
UMICH_Zoey_3.1848,846,484 - 48,928,189 (+)NCBI
UNSW_CanFamBas_1.0848,868,463 - 48,950,366 (+)NCBI
UU_Cfam_GSD_1.0849,264,573 - 49,346,349 (+)NCBI
Ift43
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864026,977,988 - 27,059,727 (-)NCBI
SpeTri2.0NW_0049364885,011,792 - 5,090,980 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
IFT43
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1799,155,889 - 99,254,436 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.27105,200,664 - 105,299,439 (+)NCBISscrofa10.2Sscrofa10.2susScr3
IFT43
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12453,231,293 - 53,329,116 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2453,231,300 - 53,329,109 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605341,447,494 - 41,545,441 (+)NCBIVero_WHO_p1.0
Ift43
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473425,628,899 - 25,713,875 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462473425,628,737 - 25,713,924 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH132427  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.26105,805,276 - 105,806,039 (+)MAPPERmRatBN7.2
Rnor_6.06110,015,666 - 110,016,428NCBIRnor6.0
Rnor_5.06119,322,953 - 119,323,715UniSTSRnor5.0
RGSC_v3.46110,275,718 - 110,276,480UniSTSRGSC3.4
Celera6103,631,909 - 103,632,671UniSTS
RH 3.4 Map6731.2UniSTS
Cytogenetic Map6q31UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)610894415110548006Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)615107216107351382Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)661747639106747639Rat
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
1641904Alcrsp4Alcohol response QTL 4response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)667262953112262953Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)671201409116201409Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)672202632115200186Rat
70196BpQTLcluster7Blood pressure QTL cluster 76.82arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)672202632117202632Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)672202632130729475Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)672202632130919985Rat
1581550Pur8Proteinuria QTL 8total urine protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)672227641130729205Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)672227641130729205Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)673463459109394713Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)682523650110548006Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)683190345106747639Rat
738034Anxrr5Anxiety related response QTL 55.9exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)684130881129130881Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)685140138130140138Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)685140138130140138Rat
724513Uae14Urinary albumin excretion QTL 146.5urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)685311061133478515Rat
1300076Glom8Glomerulus QTL 870.000000009kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli directly contacting the kidney surface (CMO:0001001)686894788131894788Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)688047916133047916Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)689762877106752806Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)693701310128713626Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)694968928137848904Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)694968928139968928Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6100671796132340886Rat
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6104085867128713626Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:17
Count of miRNA genes:16
Interacting mature miRNAs:17
Transcripts:ENSRNOT00000013560
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 13 6 2 6 66 28 41 11
Low 44 35 17 35 8 11 8 7 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013560   ⟹   ENSRNOP00000013560
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6105,729,792 - 105,806,257 (+)Ensembl
Rnor_6.0 Ensembl6109,939,345 - 110,016,644 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000104110   ⟹   ENSRNOP00000081023
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6105,729,792 - 105,806,257 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109209   ⟹   ENSRNOP00000078860
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6105,731,394 - 105,806,257 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112265   ⟹   ENSRNOP00000082023
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl6105,729,792 - 105,806,257 (+)Ensembl
RefSeq Acc Id: NM_001134525   ⟹   NP_001127997
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26105,729,787 - 105,806,255 (+)NCBI
Rnor_6.06109,939,345 - 110,016,644 (+)NCBI
Rnor_5.06119,247,640 - 119,323,933 (+)NCBI
RGSC_v3.46110,199,027 - 110,276,696 (+)RGD
Celera6103,556,375 - 103,632,887 (+)RGD
Sequence:
RefSeq Acc Id: XM_006240370   ⟹   XP_006240432
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26105,729,734 - 105,806,257 (+)NCBI
Rnor_6.06109,939,323 - 110,016,646 (+)NCBI
Rnor_5.06119,247,640 - 119,323,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006240372   ⟹   XP_006240434
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26105,729,735 - 105,806,257 (+)NCBI
Rnor_6.06109,939,323 - 110,016,646 (+)NCBI
Rnor_5.06119,247,640 - 119,323,933 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594099   ⟹   XP_017449588
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26105,729,734 - 105,806,257 (+)NCBI
Rnor_6.06109,939,323 - 110,016,646 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017594100   ⟹   XP_017449589
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26105,729,734 - 105,806,257 (+)NCBI
Rnor_6.06109,939,323 - 110,016,646 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039112051   ⟹   XP_038967979
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26105,729,734 - 105,801,703 (+)NCBI
RefSeq Acc Id: XM_039112052   ⟹   XP_038967980
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26105,729,734 - 105,801,703 (+)NCBI
RefSeq Acc Id: XM_039112053   ⟹   XP_038967981
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26105,729,734 - 105,801,703 (+)NCBI
RefSeq Acc Id: XM_039112054   ⟹   XP_038967982
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26105,729,844 - 105,806,257 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001127997   ⟸   NM_001134525
- UniProtKB: D3ZY35 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006240432   ⟸   XM_006240370
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006240434   ⟸   XM_006240372
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_017449588   ⟸   XM_017594099
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449589   ⟸   XM_017594100
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000013560   ⟸   ENSRNOT00000013560
RefSeq Acc Id: XP_038967979   ⟸   XM_039112051
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038967980   ⟸   XM_039112052
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038967981   ⟸   XM_039112053
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038967982   ⟸   XM_039112054
- Peptide Label: isoform X8
RefSeq Acc Id: ENSRNOP00000081023   ⟸   ENSRNOT00000104110
RefSeq Acc Id: ENSRNOP00000078860   ⟸   ENSRNOT00000109209
RefSeq Acc Id: ENSRNOP00000082023   ⟸   ENSRNOT00000112265

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZY35-F1-model_v2 AlphaFold D3ZY35 1-194 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13694746
Promoter ID:EPDNEW_R5270
Type:multiple initiation site
Name:Ift43_1
Description:intraflagellar transport 43
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.06109,939,368 - 109,939,428EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
6 119303275 119303276 G A snv BUF/MNa (KyushuU)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307392 AgrOrtholog
BioCyc Gene G2FUF-36761 BioCyc
Ensembl Genes ENSRNOG00000010194 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013560 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000078860 ENTREZGENE
  ENSRNOP00000081023 ENTREZGENE
  ENSRNOP00000082023 ENTREZGENE
Ensembl Transcript ENSRNOT00000013560 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000104110 ENTREZGENE
  ENSRNOT00000109209 ENTREZGENE
  ENSRNOT00000112265 ENTREZGENE
InterPro IFT43 UniProtKB/TrEMBL
KEGG Report rno:299209 UniProtKB/TrEMBL
NCBI Gene 299209 ENTREZGENE
PANTHER PTHR33724 UniProtKB/TrEMBL
Pfam IFT43 UniProtKB/TrEMBL
PhenoGen Ift43 PhenoGen
UniProt D3ZY35 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-07-09 Ift43  intraflagellar transport 43  Ift43  intraflagellar transport 43 homolog (Chlamydomonas)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-08-01 Ift43  intraflagellar transport 43 homolog (Chlamydomonas)  RGD1307392  similar to 1700019E19Rik protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1307392  similar to 1700019E19Rik protein   RGD1307392_predicted  similar to 1700019E19Rik protein (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-20 RGD1307392_predicted  similar to 1700019E19Rik protein (predicted)  LOC299209_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC299209_predicted  similar to 1700019E19Rik protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL