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ONTOLOGY REPORT - ANNOTATIONS


Term:intraciliary transport
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Accession:GO:0042073 term browser browse the term
Definition:The bidirectional movement of large protein complexes along microtubules within a cilium, mediated by motor proteins.
Comment:Note that we deem cilium and microtubule-based flagellum to be equivalent.
Synonyms:exact_synonym: intraflagellar transport;   intraflagellar transport involved in cilium organization;   intraflagellar transport involved in microtubule-based flagellum organisation
 related_synonym: IFT
 alt_id: GO:0035734
 xref: Wikipedia:Intraflagellar_transport


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intraciliary transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Arl3 ADP ribosylation factor like GTPase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:5317033|PMID:21289087)
Ensembl
RGD
PMID:21289087 GO_REF:0000107 MGI:5317033 NCBI chr 1:245,400,659...245,446,673
Ensembl chr 1:245,400,550...245,446,820
JBrowse link
G Bbs12 Bardet-Biedl syndrome 12 acts_upstream_of_or_within ISO MGI:5444297 (MGI:5462139|PMID:22869374) RGD PMID:22869374 MGI:5462139 NCBI chr 2:120,203,396...120,221,024 JBrowse link
G Cep131 centrosomal protein 131 acts_upstream_of_or_within ISO MGI:3870375 (MGI:5647985|PMID:24415959) RGD PMID:24415959 MGI:5647985 NCBI chr10:105,346,015...105,370,380
Ensembl chr10:105,346,015...105,370,380
JBrowse link
G Cilk1 ciliogenesis associated kinase 1 involved_in ISS
ISO
IBA
GO_REF:0000024
(MGI:5575827|PMID:24797473)
PMID:21873635
UniProt
RGD
PMID:24797473 PMID:21873635 GO_REF:0000024 MGI:5575827, RGD:13792537 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:78,984,258...79,042,691
JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:137,133,418...137,189,937
Ensembl chr 6:137,133,418...137,188,719
JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:13,306,039...13,322,121
Ensembl chr 3:13,306,039...13,322,121
JBrowse link
G Hspb11 heat shock protein family B (small), member 11 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:122,035,588...122,062,421
Ensembl chr 5:122,035,581...122,062,421
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (PMID:29220510) RGD PMID:29220510 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Ift140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:5311828 (MGI:5604762|PMID:24619649)
RGD PMID:24619649 PMID:21873635 MGI:5604762, RGD:13792537 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Ift172 intraflagellar transport 172 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:25,081,933...25,121,271 JBrowse link
G Ift20 intraflagellar transport 20 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:5604762|PMID:24619649)
RGD PMID:24619649 PMID:21873635 MGI:5604762, RGD:13792537 NCBI chr10:63,432,597...63,438,125
Ensembl chr10:63,432,633...63,438,124
JBrowse link
G Ift27 intraflagellar transport 27 involved_in ISO (PMID:25443296)
(MGI:5605390|PMID:25446516)
RGD PMID:25443296 PMID:25446516 MGI:5605390 NCBI chr 7:109,738,622...109,754,416
Ensembl chr 7:109,738,622...109,754,416
JBrowse link
G Ift46 intraflagellar transport 46 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:45,081,593...45,104,052
Ensembl chr 8:45,087,440...45,104,052
JBrowse link
G Ift52 intraflagellar transport 52 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980
JBrowse link
G Ift57 intraflagellar transport 57 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:51,051,520...51,124,909
Ensembl chr11:51,059,611...51,124,812
JBrowse link
G Ift81 intraflagellar transport 81 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:33,957,744...34,037,164
Ensembl chr12:33,957,806...34,037,057
JBrowse link
G Ift88 intraflagellar transport 88 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Kif3b kinesin family member 3B involved_in ISO (PMID:32386558) RGD PMID:32386558 NCBI chr 3:141,758,466...141,798,012
Ensembl chr 3:141,758,466...141,797,963
JBrowse link
G Lca5 lebercilin LCA5 involved_in
acts_upstream_of_or_within
IBA
ISO
ISS
PMID:21873635
(MGI:5050784|PMID:21606596)
GO_REF:0000024
RGD
UniProt
PMID:21606596 PMID:21873635 GO_REF:0000024 MGI:5050784, RGD:13792537 NCBI chr 8:84,307,696...84,375,025
Ensembl chr 8:84,317,659...84,374,956
JBrowse link
G Lca5l lebercilin LCA5 like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:35,460,648...35,495,133
Ensembl chr11:35,461,118...35,495,047
JBrowse link
G Mak male germ cell-associated kinase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:23,683,674...23,731,125
Ensembl chr17:23,693,878...23,730,001
JBrowse link
G Nme7 NME/NM23 family member 7 acts_upstream_of_or_within ISO (MGI:5317033|PMID:21289087) RGD PMID:21289087 MGI:5317033 NCBI chr13:76,657,303...76,786,768
Ensembl chr13:76,657,367...76,786,765
JBrowse link
G Rabl2 RAB, member of RAS oncogene family like 2 involved_in ISO (PMID:28625565) RGD PMID:28625565 NCBI chr 7:120,652,175...120,660,906
Ensembl chr 7:120,652,175...120,660,783
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator involved_in ISO (MGI:3814789|PMID:18579752) RGD PMID:18579752 MGI:3814789 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Ssna1 SS nuclear autoantigen 1 acts_upstream_of_or_within ISO (MGI:5317033|PMID:21289087) RGD PMID:21289087 MGI:5317033 NCBI chr 3:8,084,949...8,086,417
Ensembl chr 3:8,084,974...8,086,356
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977
JBrowse link
G Ttc26 tetratricopeptide repeat domain 26 involved_in ISS
ISO
GO_REF:0000024
(MGI:5608603|PMID:25340710)
UniProt
RGD
PMID:25340710 GO_REF:0000024 MGI:5608603 NCBI chr 4:67,090,622...67,154,707
Ensembl chr 4:67,090,660...67,147,903
JBrowse link
G Ttc30a1 tetratricopeptide repeat domain 30A1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:60,899,193...60,901,634
Ensembl chr 3:60,899,196...60,901,634
JBrowse link
G Ttc30b tetratricopeptide repeat domain 30B involved_in IBA
IEA
PMID:21873635
GO_REF:0000104
UniProt PMID:21873635 GO_REF:0000104, RGD:13792537 NCBI chr 3:60,855,809...60,858,380
Ensembl chr 3:60,855,575...60,858,389
JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within ISO (PMID:28154160) RGD PMID:28154160 NCBI chr 1:163,008,198...163,030,958
Ensembl chr 1:162,951,931...163,026,812
JBrowse link
G Wdr35 WD repeat domain 35 involved_in ISO (PMID:29220510) RGD PMID:29220510 NCBI chr 6:31,771,315...31,831,450
Ensembl chr 6:31,771,360...31,831,029
JBrowse link
intraciliary anterograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cilk1 ciliogenesis associated kinase 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5787768|PMID:25243405)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25243405 GO_REF:0000024 GO_REF:0000107 MGI:5787768 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:78,984,258...79,042,691
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:4888042|PMID:21209331) RGD PMID:21209331 MGI:4888042 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Ift52 intraflagellar transport 52 involved_in ISO (PMID:27466190) RGD PMID:27466190 NCBI chr 3:151,672,505...151,696,975
Ensembl chr 3:151,672,493...151,696,980
JBrowse link
G Ttc26 tetratricopeptide repeat domain 26 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,090,622...67,154,707
Ensembl chr 4:67,090,660...67,147,903
JBrowse link
intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cilk1 ciliogenesis associated kinase 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5787768|PMID:25243405)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:25243405 GO_REF:0000024 GO_REF:0000107 MGI:5787768 NCBI chr 8:78,984,075...79,042,695
Ensembl chr 8:78,984,258...79,042,691
JBrowse link
G Dync2h1 dynein cytoplasmic 2 heavy chain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:4359237 (MGI:3804352|PMID:18488998)
PMID:21873635
Ensembl
RGD
PMID:18488998 PMID:21873635 GO_REF:0000107 MGI:3804352, RGD:13792537 NCBI chr 8:4,189,257...4,412,183
Ensembl chr 8:4,189,257...4,412,183
JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO (PMID:29742051), (PMID:30649997) RGD PMID:29742051 PMID:30649997 NCBI chr 6:137,133,418...137,189,937
Ensembl chr 6:137,133,418...137,188,719
JBrowse link
G Dync2i2 dynein 2 intermediate chain 2 involved_in ISO (PMID:29742051), (PMID:30649997)
(MGI:5906938|PMID:28379358)
RGD PMID:28379358 PMID:29742051 PMID:30649997 MGI:5906938 NCBI chr 3:13,306,039...13,322,121
Ensembl chr 3:13,306,039...13,322,121
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:9,992,537...10,025,403
Ensembl chr 6:9,992,541...10,025,336
JBrowse link
G Dynll1 dynein light chain LC8-type 1 acts_upstream_of_or_within ISO MGI:4368846 (MGI:5615046|PMID:25294941) RGD PMID:25294941 MGI:5615046 NCBI chr12:41,312,367...41,314,742
Ensembl chr12:41,312,367...41,314,741
JBrowse link
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO (PMID:29742051) RGD PMID:29742051 NCBI chr11:68,359,138...68,367,573
Ensembl chr11:68,358,263...68,367,499
JBrowse link
G Ift122 intraflagellar transport 122 involved_in IBA
ISO
PMID:21873635
(MGI:4888042|PMID:21209331)
RGD PMID:21209331 PMID:21873635 MGI:4888042, RGD:13792537 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Ift140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:22503633)
MGI:4458412 (MGI:5635784|PMID:24009529)
PMID:21873635
RGD PMID:22503633 PMID:24009529 PMID:21873635 MGI:5635784, RGD:13792537 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Ift43 intraflagellar transport 43 involved_in ISO (PMID:21378380) RGD PMID:21378380 NCBI chr 6:105,729,734...105,806,257
Ensembl chr 6:105,729,792...105,806,257
JBrowse link
G Ttc21a tetratricopeptide repeat domain 21A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:119,667,044...119,702,028
Ensembl chr 8:119,666,933...119,702,456
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2152544|MGI:2669525|MGI:5587034 (MGI:3784018|PMID:18327258), (MGI:4367927|PMID:19732765), (MGI:5789453|PMID:27482817)
RGD PMID:18327258 PMID:19732765 PMID:27482817 PMID:21873635 MGI:3784018 MGI:4367927 MGI:5789453, RGD:13792537 NCBI chr 3:50,861,367...50,935,782
Ensembl chr 3:50,861,367...50,935,903
JBrowse link
G Wdr19 WD repeat domain 19 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:20889716)
RGD PMID:20889716 PMID:21873635 RGD:13792537 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
JBrowse link
G Wdr35 WD repeat domain 35 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(PMID:20889716)
RGD PMID:20889716 PMID:21873635 RGD:13792537 NCBI chr 6:31,771,315...31,831,450
Ensembl chr 6:31,771,360...31,831,029
JBrowse link
intraciliary transport involved in cilium assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cep131 centrosomal protein 131 involved_in ISO (PMID:24550735) RGD PMID:24550735 NCBI chr10:105,346,015...105,370,380
Ensembl chr10:105,346,015...105,370,380
JBrowse link
G Dync2li1 dynein cytoplasmic 2 light intermediate chain 1 involved_in ISO
IBA
ISS
(PMID:26077881)
PMID:21873635
GO_REF:0000024
RGD
UniProt
PMID:26077881 PMID:21873635 GO_REF:0000024, RGD:13792537 NCBI chr 6:9,992,537...10,025,403
Ensembl chr 6:9,992,541...10,025,336
JBrowse link
G Ift74 intraflagellar transport 74 involved_in ISO
IBA
(PMID:23990561)
PMID:21873635
RGD PMID:23990561 PMID:21873635 RGD:13792537 NCBI chr 5:109,460,372...109,563,839
Ensembl chr 5:109,474,255...109,563,833
JBrowse link
G Ift81 intraflagellar transport 81 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(PMID:23990561)
UniProt
Ensembl
RGD
PMID:23990561 GO_REF:0000024 GO_REF:0000107 NCBI chr12:33,957,744...34,037,164
Ensembl chr12:33,957,806...34,037,057
JBrowse link
G Pcm1 pericentriolar material 1 involved_in IBA
ISO
PMID:21873635
(PMID:24550735)
RGD PMID:24550735 PMID:21873635 RGD:13792537 NCBI chr16:51,008,315...51,105,261
Ensembl chr16:51,008,315...51,105,091
JBrowse link
G Ssx2ip SSX family member 2 interacting protein involved_in ISS
ISO
GO_REF:0000024
(PMID:24356449)
UniProt
RGD
PMID:24356449 GO_REF:0000024 NCBI chr 2:235,298,012...235,330,750
Ensembl chr 2:235,298,088...235,330,745
JBrowse link
G Ttc26 tetratricopeptide repeat domain 26 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:67,090,622...67,154,707
Ensembl chr 4:67,090,660...67,147,903
JBrowse link
regulation of intraciliary retrograde transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dynlt2b dynein light chain Tctex-type 2B involved_in ISO (PMID:26044572) RGD PMID:26044572 NCBI chr11:68,359,138...68,367,573
Ensembl chr11:68,358,263...68,367,499
JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in ISO (PMID:27932497) RGD PMID:27932497 NCBI chr 3:50,861,367...50,935,782
Ensembl chr 3:50,861,367...50,935,903
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    localization 6447
      protein-containing complex localization 265
        intraciliary transport 43
          intraciliary anterograde transport + 4
          intraciliary retrograde transport + 14
          intraciliary transport involved in cilium assembly 7
Path 2
Term Annotations click to browse term
  biological_process 19492
    localization 6447
      establishment of localization 4864
        transport 4700
          intracellular transport 1518
            cytoskeleton-dependent intracellular transport 202
              transport along microtubule 171
                intraciliary transport 43
                  intraciliary anterograde transport + 4
                  intraciliary retrograde transport + 14
                  intraciliary transport involved in cilium assembly 7
paths to the root