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ONTOLOGY REPORT - ANNOTATIONS

Term:maturation of SSU-rRNA
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Accession:GO:0030490 term browser browse the term
Definition:Any process involved in the maturation of a precursor Small SubUnit (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule.
Synonyms:exact_synonym: SSU-rRNA maturation
 narrow_synonym: processing of 20S pre-rRNA

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show annotations for term's descendants           Sort by:
maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DDX52 DExD-box helicase 52 involved_in IEA InterPro GO_REF:0000002 NCBI chr16:30,138,075...30,168,803
Ensembl chr16:30,138,084...30,170,332 		JBrowse link
G LOC103244317 NHP2-like protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:13,631,584...13,632,034 JBrowse link
G LOC119618426 U6 snRNA-associated Sm-like protein LSm6 involved_in IEA TreeGrafter GO_REF:0000118
G LOC119621116 40S ribosomal protein S28-like involved_in IEA TreeGrafter GO_REF:0000118
G LOC119624301 40S ribosomal protein S28-like involved_in IEA TreeGrafter GO_REF:0000118
G LSM6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:92,719,482...92,734,351
Ensembl chr 7:92,719,503...92,735,321 		JBrowse link
G NOB1 NIN1 (RPN12) binding protein 1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:57,646,386...57,661,014
Ensembl chr 5:57,646,587...57,662,406 		JBrowse link
G NOL11 nucleolar protein 11 involved_in IEA InterPro
TreeGrafter
Ensembl		 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 NCBI chr16:53,720,229...53,747,715
Ensembl chr16:53,720,571...53,747,658 		JBrowse link
G NOL7 nucleolar protein 7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:58,528,431...58,532,563
Ensembl chr17:58,528,500...58,532,533 		JBrowse link
G NOP14 NOP14 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:45,765,452...45,803,010
Ensembl chr27:45,765,603...45,806,730 		JBrowse link
G RIOK1 RIO kinase 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:64,776,613...64,804,989
Ensembl chr17:64,776,629...64,805,280 		JBrowse link
G RIOK2 RIO kinase 2 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:90,992,940...91,010,016
Ensembl chr 4:90,996,371...91,010,036 		JBrowse link
G RIOK3 RIO kinase 3 involved_in ISO (PMID:22418843) UniProt PMID:22418843 NCBI chr18:57,048,500...57,078,770
Ensembl chr18:57,048,447...57,078,312 		JBrowse link
G RPS19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) UniProt PMID:16990592 PMID:17053056 NCBI chr 6:36,067,959...36,085,581 JBrowse link
G RPS28 ribosomal protein S28 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:7,684,720...7,685,597 JBrowse link
G SNU13 small nuclear ribonucleoprotein 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr19:24,209,356...24,223,431
Ensembl chr19:24,206,653...24,216,686 		JBrowse link
G SRFBP1 serum response factor binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr23:25,063,926...25,124,601
Ensembl chr23:25,063,910...25,126,523 		JBrowse link
G TSR3 TSR3 ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:1,237,625...1,240,287
Ensembl chr 5:1,237,821...1,240,191 		JBrowse link
G UTP4 UTP4 small subunit processome component involved_in ISO (PMID:22916032) UniProt PMID:22916032 NCBI chr 5:58,236,110...58,275,057
Ensembl chr 5:58,234,035...58,275,243 		JBrowse link
G WDR3 WD repeat domain 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:15,773,294...15,803,157
Ensembl chr20:15,772,511...15,799,581 		JBrowse link
endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:45,617,425...45,619,634
Ensembl chr17:45,616,617...45,619,681 		JBrowse link
G FCF1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chr24:51,928,076...51,947,993 JBrowse link
G LOC103219498 RNA 3'-terminal phosphate cyclase-like protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr12:74,688,284...74,754,184
Ensembl chr12:74,687,071...74,754,045 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,282,877...1,288,265
Ensembl chr24:1,282,873...1,288,148 		JBrowse link
G TBL3 transducin beta like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:1,867,943...1,874,640
Ensembl chr 5:1,867,917...1,875,236 		JBrowse link
G UTP23 UTP23 small subunit processome component involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr 8:111,404,636...111,410,083
Ensembl chr 8:111,404,634...111,413,673 		JBrowse link
endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:45,617,425...45,619,634
Ensembl chr17:45,616,617...45,619,681 		JBrowse link
G FCF1 FCF1 rRNA-processing protein acts_upstream_of_or_within ISO (PMID:25190460) MGI PMID:25190460 NCBI chr24:51,928,076...51,947,993 JBrowse link
G KRI1 KRI1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:9,564,977...9,579,267
Ensembl chr 6:9,562,857...9,574,360 		JBrowse link
G LOC103219498 RNA 3'-terminal phosphate cyclase-like protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25190460) Ensembl
MGI		 PMID:25190460 GO_REF:0000107 NCBI chr12:74,688,284...74,754,184
Ensembl chr12:74,687,071...74,754,045 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,282,877...1,288,265
Ensembl chr24:1,282,873...1,288,148 		JBrowse link
G RPP40 ribonuclease P/MRP subunit p40 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:67,172,759...67,181,669
Ensembl chr17:67,173,130...67,181,975 		JBrowse link
G RPS21 ribosomal protein S21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:1,841,865...1,843,332
Ensembl chr 2:1,841,865...1,843,087 		JBrowse link
G RRS1 ribosome biogenesis regulator 1 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:62,297,483...62,299,194
Ensembl chr 8:62,297,608...62,298,705 		JBrowse link
endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RPS21 ribosomal protein S21 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:1,841,865...1,843,332
Ensembl chr 2:1,841,865...1,843,087 		JBrowse link
endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABT1 activator of basal transcription 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:45,617,425...45,619,634
Ensembl chr17:45,616,617...45,619,681 		JBrowse link
G NOP9 NOP9 nucleolar protein involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr24:1,282,877...1,288,265
Ensembl chr24:1,282,873...1,288,148 		JBrowse link
G TBL3 transducin beta like 3 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:1,867,943...1,874,640
Ensembl chr 5:1,867,917...1,875,236 		JBrowse link
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AATF apoptosis antagonizing transcription factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:30,728,070...30,838,816
Ensembl chr16:30,728,070...30,838,704 		JBrowse link
G BMS1 BMS1 ribosome biogenesis factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:38,459,322...38,503,090
Ensembl chr 9:38,459,237...38,505,560 		JBrowse link
G BYSL bystin like involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17242206) Ensembl
MGI		 PMID:17242206 GO_REF:0000107 NCBI chr17:30,230,001...30,241,684
Ensembl chr17:30,230,337...30,241,417 		JBrowse link
G DCAF13 DDB1 and CUL4 associated factor 13 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 8:98,271,304...98,297,950 JBrowse link
G DHX37 DEAH-box helicase 37 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr11:120,304,767...120,347,439
Ensembl chr11:120,304,314...120,347,227 		JBrowse link
G ERCC2 ERCC excision repair 2, TFIIH core complex helicase subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 NCBI chr 6:38,804,296...38,823,229
Ensembl chr 6:38,801,423...38,823,073 		JBrowse link
G GTF2H5 general transcription factor IIH subunit 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23562818) Ensembl
MGI		 PMID:23562818 GO_REF:0000107 Ensembl chr13:85,771,630...85,782,646 JBrowse link
G HEATR1 HEAT repeat containing 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:73,684,845...73,743,594
Ensembl chr25:73,685,895...73,743,654 		JBrowse link
G LOC103236113 pre-rRNA-processing protein TSR2 homolog involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:57,845,687...57,846,322 JBrowse link
G NGDN neuroguidin involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr29:23,840,583...23,848,726
Ensembl chr29:23,840,639...23,849,653 		JBrowse link
G NOL10 nucleolar protein 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:96,929,399...97,045,962
Ensembl chr14:96,929,085...97,047,597 		JBrowse link
G PWP2 PWP2 small subunit processome component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 2:87,858,003...87,881,072
Ensembl chr 2:87,858,029...87,881,102 		JBrowse link
G RPS16 ribosomal protein S16 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 6:34,039,470...34,042,278
Ensembl chr 6:34,039,251...34,042,313 		JBrowse link
G RPS19 ribosomal protein S19 involved_in ISO (PMID:16990592), (PMID:17053056) UniProt PMID:16990592 PMID:17053056 NCBI chr 6:36,067,959...36,085,581 JBrowse link
G RPS8 ribosomal protein S8 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr20:88,011,614...88,014,769
Ensembl chr20:88,010,616...88,015,477 		JBrowse link
G RRP36 ribosomal RNA processing 36 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:29,130,607...29,138,585
Ensembl chr17:29,130,981...29,138,395 		JBrowse link
G SLX9 SLX9 ribosome biogenesis factor involved_in IEA InterPro GO_REF:0000002 NCBI chr 2:88,652,219...88,703,220
Ensembl chr 2:88,652,222...88,690,577 		JBrowse link
G TSR1 TSR1 ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:1,955,566...1,970,424
Ensembl chr16:1,955,317...1,969,374 		JBrowse link
G TSR2 TSR2 ribosome maturation factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr  X:50,532,958...50,555,179 JBrowse link
G UTP25 UTP25 small subunit processome component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr25:19,601,165...19,625,274
Ensembl chr25:19,600,266...19,625,229 		JBrowse link
G UTP3 UTP3 small subunit processome component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:19,196,995...19,199,149
Ensembl chr 7:19,197,280...19,198,725 		JBrowse link
G UTP4 UTP4 small subunit processome component involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:58,236,110...58,275,057
Ensembl chr 5:58,234,035...58,275,243 		JBrowse link
G UTP6 UTP6 small subunit processome component involved_in IEA InterPro
TreeGrafter		 GO_REF:0000002 GO_REF:0000118 NCBI chr16:25,337,595...25,377,832
Ensembl chr16:25,336,937...25,377,831 		JBrowse link
G WDR43 WD repeat domain 43 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr14:78,651,387...78,691,829 JBrowse link
G WDR46 WD repeat domain 46 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:38,787,932...38,797,940
Ensembl chr17:38,788,275...38,799,858 		JBrowse link
rRNA acetylation involved in maturation of SSU-rRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NAT10 N-acetyltransferase 10 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:31,126,387...31,171,751
Ensembl chr 1:31,126,262...31,170,833 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16925
    metabolic process 10515
      primary metabolic process 9206
        RNA processing 894
          rRNA processing 225
            maturation of SSU-rRNA 54
              maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) + 0
              maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0
              maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) + 35
              maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) + 0
              rRNA acetylation involved in maturation of SSU-rRNA 1
Path 2
Term Annotations click to browse term
  biological_process 16925
    metabolic process 10515
      organic substance metabolic process 10067
        organic cyclic compound metabolic process 5671
          nucleobase-containing compound metabolic process 5211
            nucleic acid metabolic process 4699
              nucleic acid biosynthetic process 4069
                RNA biosynthetic process 3964
                  RNA processing 894
                    rRNA processing 225
                      maturation of SSU-rRNA 54
                        maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, 2S rRNA, LSU-rRNA) + 0
                        maturation of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA) 0
                        maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) + 35
                        maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, LSU-rRNA,5S) + 0
                        rRNA acetylation involved in maturation of SSU-rRNA 1
paths to the root