LOC119621116 (40S ribosomal protein S28-like) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC119621116 (40S ribosomal protein S28-like) Chlorocebus sabaeus
Analyze
Symbol: LOC119621116
Name: 40S ribosomal protein S28-like
RGD ID: 40896177
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN maturation of SSU-rRNA (inferred); ribosomal small subunit assembly (inferred); translation (inferred); FOUND IN cytosolic small ribosomal subunit (inferred); ribosome (inferred)
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366606710,856,184 - 10,856,567 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_037989496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_037989496   ⟹   XP_037845424
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366606710,856,184 - 10,856,567 (+)NCBI
Protein Sequences
Protein RefSeqs XP_037845424 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000017818.1
Reference Protein Sequences
RefSeq Acc Id: XP_037845424   ⟸   XM_037989496
- UniProtKB: A0A0D9SAC9 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000000174 UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000018361.1 UniProtKB/TrEMBL
Gene3D-CATH Nucleic acid-binding proteins UniProtKB/TrEMBL
InterPro NA-bd_OB-fold UniProtKB/TrEMBL
  Ribosomal_S28e UniProtKB/TrEMBL
  Ribosomal_S28e_CS UniProtKB/TrEMBL
NCBI Gene LOC119621116 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S28 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S28 UniProtKB/TrEMBL
Pfam Ribosomal_S28e UniProtKB/TrEMBL
PROSITE RIBOSOMAL_S28E UniProtKB/TrEMBL
Superfamily-SCOP Nucleic acid-binding proteins UniProtKB/TrEMBL
UniProt A0A0D9SAC9 ENTREZGENE, UniProtKB/TrEMBL