Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:forebrain regionalization
go back to main search page
Accession:GO:0021871 term browser browse the term
Definition:The regionalization process resulting in the creation of areas within the forebrain that will direct the behavior of cell migration in differentiation as the forebrain develops.

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
forebrain regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624871:3,954,490...3,961,861
Ensembl chrNW_004624871:3,954,504...3,963,033 		JBrowse link
G Pgap1 post-GPI attachment to proteins inositol deacylase 1 acts_upstream_of_or_within ISO (PMID:10529425) MGI PMID:10529425 NCBI chrNW_004624889:3,174,626...3,256,555
Ensembl chrNW_004624889:3,174,739...3,244,315 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:24528677) MGI PMID:24528677 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Wnt2b Wnt family member 2B involved_in ISO (PMID:15164427) UniProt PMID:15164427 NCBI chrNW_004624772:8,305,042...8,319,882
Ensembl chrNW_004624772:8,304,708...8,319,349 		JBrowse link
G Wnt7b Wnt family member 7B involved_in ISO (PMID:15164427) UniProt PMID:15164427 NCBI chrNW_004624752:3,818,073...3,856,602
Ensembl chrNW_004624752:3,818,025...3,857,027 		JBrowse link
cerebral cortex regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adgrg1 adhesion G protein-coupled receptor G1 acts_upstream_of_or_within ISO (PMID:24531968) MGI PMID:24531968 NCBI chrNW_004624746:28,439,855...28,476,551
Ensembl chrNW_004624746:28,436,895...28,476,926 		JBrowse link
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:23431145) MGI PMID:23431145 NCBI chrNW_004624744:27,008,292...27,009,602
Ensembl chrNW_004624744:27,008,471...27,009,583 		JBrowse link
G Dmrta2 DMRT like family A2 acts_upstream_of_or_within ISO (PMID:23056351)
(PMID:22923088)		 MGI PMID:22923088 PMID:23056351 NCBI chrNW_004624859:2,644,569...2,649,581
Ensembl chrNW_004624859:2,645,733...2,648,559 		JBrowse link
G Emx1 empty spiracles homeobox 1 acts_upstream_of_or_within ISO (PMID:15147765) MGI PMID:15147765 NCBI chrNW_004624762:685,331...702,040
Ensembl chrNW_004624762:681,308...701,998 		JBrowse link
G Emx2 empty spiracles homeobox 2 acts_upstream_of_or_within ISO (PMID:15147765)
(PMID:12764040)		 MGI PMID:12764040 PMID:15147765 NCBI chrNW_004624737:29,103,378...29,110,356
Ensembl chrNW_004624737:29,103,279...29,110,344 		JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within		 ISO (PMID:30186101)
(PMID:23431145)		 MGI PMID:23431145 PMID:30186101 NCBI chrNW_004624788:5,550,569...5,557,342
Ensembl chrNW_004624788:5,550,445...5,557,321 		JBrowse link
G Nr2f1 nuclear receptor subfamily 2 group F member 1 acts_upstream_of_or_within ISO (PMID:17828260) MGI PMID:17828260 NCBI chrNW_004624743:12,479,427...12,488,178
Ensembl chrNW_004624743:12,478,832...12,488,458 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23431145)
(PMID:12764040)		 Ensembl
MGI		 PMID:12764040 PMID:23431145 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Tra2b transformer 2 beta homolog acts_upstream_of_or_within ISO (PMID:24586484) MGI PMID:24586484 NCBI chrNW_004624730:70,801,227...70,822,188
Ensembl chrNW_004624730:70,801,207...70,822,178 		JBrowse link
forebrain anterior/posterior pattern specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fezf1 FEZ family zinc finger 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16971467) Ensembl
MGI		 PMID:16971467 GO_REF:0000107 NCBI chrNW_004624783:13,715,987...13,719,287
Ensembl chrNW_004624783:13,713,422...13,718,604 		JBrowse link
G Fezf2 FEZ family zinc finger 2 acts_upstream_of_or_within ISO (PMID:16971467) MGI PMID:16971467 NCBI chrNW_004624888:3,462,132...3,467,701
Ensembl chrNW_004624888:3,462,233...3,468,293 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO (PMID:18094027) MGI PMID:18094027 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Wnt1 Wnt family member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18094027) Ensembl
MGI		 PMID:18094027 GO_REF:0000107 NCBI chrNW_004624816:3,209,605...3,212,969
Ensembl chrNW_004624816:3,209,699...3,212,606 		JBrowse link
forebrain dorsal/ventral pattern formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO (PMID:16613831) MGI PMID:16613831 NCBI chrNW_004624831:1,251,991...1,259,247
Ensembl chrNW_004624831:1,253,044...1,257,741 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10625551) MGI PMID:10625551 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:11060228), (PMID:11124115), (PMID:18701439) MGI PMID:11060228 PMID:11124115 PMID:18701439 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Nkx2-1 NK2 homeobox 1 acts_upstream_of_or_within ISO (PMID:10393115), (PMID:11163262), (PMID:11830575) MGI PMID:10393115 PMID:11163262 PMID:11830575 NCBI chrNW_004624838:300,902...304,944
Ensembl chrNW_004624838:300,458...305,517 		JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11050125), (PMID:18701439), (PMID:24528677)
(PMID:11124115)		 Ensembl
MGI		 PMID:11050125 PMID:11124115 PMID:18701439 PMID:24528677 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18791198) UniProt PMID:18791198 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
G Ttc21b tetratricopeptide repeat domain 21B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19732765) Ensembl
MGI		 PMID:19732765 GO_REF:0000107 NCBI chrNW_004624787:3,685,700...3,745,018
Ensembl chrNW_004624787:3,686,088...3,744,895 		JBrowse link
telencephalon regionalization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within ISO (PMID:11719201) MGI PMID:11719201 NCBI chrNW_004624741:7,706,205...7,717,677
Ensembl chrNW_004624741:7,706,236...7,719,484 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:16855091)
(PMID:11719201)		 MGI PMID:11719201 PMID:16855091 NCBI chrNW_004624731:15,262,480...15,269,196
Ensembl chrNW_004624731:15,263,274...15,269,743 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within ISO (PMID:18701439) MGI PMID:18701439 NCBI chrNW_004624761:15,387,217...15,389,404
Ensembl chrNW_004624761:15,387,674...15,389,229 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO (PMID:11719201) MGI PMID:11719201 NCBI chrNW_004624760:10,951,837...10,982,592 JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:26166575) MGI PMID:26166575 NCBI chrNW_004624884:1,830,645...1,840,213 JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18701439) Ensembl
MGI		 PMID:18701439 GO_REF:0000107 NCBI chrNW_004624766:20,536,581...20,554,589
Ensembl chrNW_004624766:20,536,233...20,554,759 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11060228) RGD
MGI		 PMID:9811591 PMID:11060228 RGD:2306311 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:18694563) UniProt PMID:18694563 NCBI chrNW_004624738:26,379,172...26,391,669
Ensembl chrNW_004624738:26,380,088...26,394,252 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15114
    multicellular organismal process 7140
      pattern specification process 459
        regionalization 423
          forebrain regionalization 27
            forebrain anterior/posterior pattern specification 4
            forebrain dorsal/ventral pattern formation 7
            telencephalon regionalization + 16
Path 2
Term Annotations click to browse term
  biological_process 15114
    developmental process 6196
      anatomical structure development 5828
        multicellular organism development 4733
          system development 4130
            nervous system development 2612
              central nervous system development 1134
                brain development 854
                  forebrain development 537
                    forebrain regionalization 27
                      forebrain anterior/posterior pattern specification 4
                      forebrain dorsal/ventral pattern formation 7
                      telencephalon regionalization + 16
paths to the root