Fezf1 (FEZ family zinc finger 1) - Rat Genome Database

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Gene: Fezf1 (FEZ family zinc finger 1) Heterocephalus glaber
Analyze
Symbol: Fezf1
Name: FEZ family zinc finger 1
RGD ID: 18910538
Description: ENCODES a protein that exhibits DNA-binding transcription repressor activity, RNA polymerase II-specific (inferred); RNA polymerase II cis-regulatory region sequence-specific DNA binding (inferred); sequence-specific DNA binding (inferred); INVOLVED IN axon guidance (ortholog); forebrain anterior/posterior pattern specification (ortholog); forebrain development (ortholog); ASSOCIATED WITH amenorrhea (ortholog); genetic disease (ortholog); hypogonadotropic hypogonadism 22 with or without anosmia (ortholog); FOUND IN cytosol (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: fez family zinc finger protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Genes
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478313,713,422 - 13,718,604 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478313,715,987 - 13,719,287 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Fezf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478313,713,422 - 13,718,604 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478313,715,987 - 13,719,287 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
FEZF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387122,301,303 - 122,310,723 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7122,301,303 - 122,310,691 (-)EnsemblGRCh38hg38GRCh38
GRCh377121,941,357 - 121,944,804 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367121,729,287 - 121,731,835 (-)NCBINCBI36Build 36hg18NCBI36
Celera7116,745,770 - 116,748,887 (-)NCBICelera
Cytogenetic Map7q31.32NCBI
HuRef7116,304,856 - 116,307,947 (-)NCBIHuRef
CHM1_17121,874,824 - 121,877,944 (-)NCBICHM1_1
T2T-CHM13v2.07123,617,261 - 123,627,513 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27121,336,131 - 121,339,251 (-)NCBI
Fezf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39623,245,043 - 23,250,942 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl623,245,043 - 23,248,361 (-)EnsemblGRCm39 Ensembl
GRCm38623,245,044 - 23,250,936 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl623,245,044 - 23,248,362 (-)EnsemblGRCm38mm10GRCm38
MGSCv37623,195,047 - 23,198,264 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36623,195,048 - 23,198,363 (-)NCBIMGSCv36mm8
Celera623,288,549 - 23,291,766 (-)NCBICelera
Cytogenetic Map6A3.1NCBI
cM Map610.55NCBI
Fezf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8452,728,385 - 52,733,315 (-)NCBIGRCr8
mRatBN7.2451,762,751 - 51,766,078 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl451,762,751 - 51,766,078 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx456,736,924 - 56,740,292 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0452,657,956 - 52,661,324 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0451,098,883 - 51,102,210 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0450,309,281 - 50,312,608 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl450,309,281 - 50,312,608 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0450,092,049 - 50,095,376 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4449,641,144 - 49,644,471 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera446,957,155 - 46,960,482 (-)NCBICelera
Cytogenetic Map4q22NCBI
Fezf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554793,945,292 - 3,951,847 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554793,945,358 - 3,953,924 (-)NCBIChiLan1.0ChiLan1.0
FEZF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26159,172,441 - 159,183,332 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1711,182,695 - 11,193,565 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07114,311,563 - 114,322,490 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17126,995,708 - 127,005,733 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7126,995,708 - 127,005,732 (-)Ensemblpanpan1.1panPan2
FEZF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha1459,516,294 - 59,519,740 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01460,134,017 - 60,137,791 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11460,225,153 - 60,228,448 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01459,853,061 - 59,856,359 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01460,230,290 - 60,233,738 (-)NCBIUU_Cfam_GSD_1.0
Fezf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511849,173,482 - 49,183,525 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366053,027,122 - 3,030,449 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366053,027,138 - 3,030,442 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FEZF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1824,879,031 - 24,884,917 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11824,881,850 - 24,884,790 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21826,477,369 - 26,481,974 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FEZF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12191,099,660 - 91,110,242 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2191,100,346 - 91,102,767 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604212,434,235 - 12,444,298 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000008529   ⟹   ENSHGLP00000008440
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462478313,713,422 - 13,718,604 (+)Ensembl
RefSeq Acc Id: XM_004856475   ⟹   XP_004856532
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462478313,715,987 - 13,719,287 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004856532 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000008440
  ENSHGLP00100017032
GenBank Protein JAN96044 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004856532   ⟸   XM_004856475
- UniProtKB: A0A0P6IYX9 (UniProtKB/TrEMBL),   G5AZE0 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000008440   ⟸   ENSHGLT00000008529


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000006102 Ensembl, ENTREZGENE
  ENSHGLG00100012560 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008529 ENTREZGENE
  ENSHGLT00100017215 UniProtKB/TrEMBL
Gene3D-CATH Classic Zinc Finger UniProtKB/TrEMBL
InterPro Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/TrEMBL
KEGG Report hgl:101725843 UniProtKB/TrEMBL
NCBI Gene Fezf1 ENTREZGENE
PANTHER FEZ FAMILY ZINC FINGER PROTEIN ERM UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
Pfam zf-C2H2 UniProtKB/TrEMBL
  zf-C2H2_6 UniProtKB/TrEMBL
PROSITE ZINC_FINGER_C2H2_1 UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/TrEMBL
SMART ZnF_C2H2 UniProtKB/TrEMBL
Superfamily-SCOP SSF57667 UniProtKB/TrEMBL
UniProt A0A0P6IYX9 ENTREZGENE, UniProtKB/TrEMBL
  G5AZE0 ENTREZGENE, UniProtKB/TrEMBL