Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:spermidine metabolic process
go back to main search page
Accession:GO:0008216 term browser browse the term
Definition:The chemical reactions and pathways involving spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Synonyms:exact_synonym: spermidine metabolism


show annotations for term's descendants           Sort by:
spermidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase involved_in IDA
IBA		 (PMID:23525104) UniProt
GO_Central		 PMID:23525104 GO_REF:0000033 NCBI chr19:12,672,470...12,681,880
Ensembl chr19:12,675,717...12,681,880 		JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PAOX polyamine oxidase involved_in IDA (PMID:16354669) UniProt PMID:16354669 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,379,261...133,391,694 		JBrowse link
spermidine acetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SAT1 spermidine/spermine N1-acetyltransferase 1 involved_in ISO
IBA
IDA		 (PMID:15283699) RGD
GO_Central
UniProt		 PMID:15283699 PMID:15541750 GO_REF:0000033 RGD:7244190 NCBI chr  X:23,783,173...23,786,210
Ensembl chr  X:23,783,173...23,786,210 		JBrowse link
G SAT2 spermidine/spermine N1-acetyltransferase family member 2 involved_in
NOT|involved_in		 IDA (PMID:12803540)
(PMID:15283699)		 UniProt PMID:12803540 PMID:15283699 NCBI chr17:7,626,234...7,627,876
Ensembl chr17:7,626,234...7,627,876 		JBrowse link
G SATL1 spermidine/spermine N1-acetyl transferase like 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr  X:85,092,284...85,243,779
Ensembl chr  X:85,092,284...85,243,911 		JBrowse link
spermidine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMD1 adenosylmethionine decarboxylase 1 involved_in ISO
IBA
IEA		 RGD
GO_Central
InterPro
UniProt		 PMID:1415709 PMID:10430362 PMID:10712236 GO_REF:0000002 GO_REF:0000033 GO_REF:0000043 RGD:1578320 RGD:7242911 RGD:7242912 NCBI chr 6:110,814,617...110,895,713
Ensembl chr 6:110,874,770...110,898,879 		JBrowse link
G SRM spermidine synthase involved_in ISO
IBA
IDA
IEA		 (PMID:17585781) RGD
GO_Central
UniProt		 PMID:8494549 PMID:12843627 PMID:16931179 PMID:17585781 GO_REF:0000033 GO_REF:0000041 GO_REF:0000043 RGD:1359042 RGD:7242920 RGD:7242928 NCBI chr 1:11,054,589...11,060,018
Ensembl chr 1:11,054,584...11,060,020 		JBrowse link
spermidine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DHPS deoxyhypusine synthase involved_in ISO
IEA		 RGD
Ensembl		 PMID:7721768 GO_REF:0000107 RGD:2316236 NCBI chr19:12,672,470...12,681,880
Ensembl chr19:12,675,717...12,681,880 		JBrowse link
G PAOX polyamine oxidase involved_in ISO
IEA
IBA
IDA		 (PMID:16354669) RGD
Ensembl
GO_Central
UniProt		 PMID:7560898 PMID:16354669 GO_REF:0000033 GO_REF:0000107 RGD:7244191 NCBI chr10:133,379,262...133,391,694
Ensembl chr10:133,379,261...133,391,694 		JBrowse link
spermidine deacetylation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HDAC10 histone deacetylase 10 involved_in IDA (PMID:28516954) UniProt PMID:28516954 NCBI chr22:50,245,183...50,251,265
Ensembl chr22:50,245,183...50,251,405 		JBrowse link
G HDAC6 histone deacetylase 6 NOT|involved_in IDA (PMID:28516954) UniProt PMID:28516954 NCBI chr  X:48,801,398...48,824,982
Ensembl chr  X:48,801,377...48,824,982 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20497
    cellular process 19744
      metabolic process 13573
        amine metabolic process 134
          biogenic amine metabolic process 120
            polyamine metabolic process 19
              spermidine metabolic process 9
                spermidine acetylation 3
                spermidine biosynthetic process + 3
                spermidine catabolic process 2
                spermidine deacetylation 2
paths to the root