AMD1 (adenosylmethionine decarboxylase 1) - Rat Genome Database

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Gene: AMD1 (adenosylmethionine decarboxylase 1) Homo sapiens
Analyze
Symbol: AMD1
Name: adenosylmethionine decarboxylase 1
RGD ID: 1351440
HGNC Page HGNC
Description: Enables identical protein binding activity. Predicted to be involved in spermidine biosynthetic process and spermine biosynthetic process. Predicted to act upstream of or within in utero embryonic development. Predicted to be active in cytosol. Implicated in lung non-small cell carcinoma. Biomarker of prostate cancer.
Type: protein-coding
RefSeq Status: REVIEWED
Also known as: ADOMETDC; AMD; DKFZp313L1234; FLJ26964; S-adenosylmethionine decarboxylase 1; S-adenosylmethionine decarboxylase proenzyme; SAMDC
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: AMD1P1   AMD1P2   AMD1P3   AMD1P4   LOC100420741   LOC645272  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6110,874,770 - 110,898,879 (+)EnsemblGRCh38hg38GRCh38
GRCh386110,814,617 - 110,895,713 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh376111,135,820 - 111,216,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366111,302,680 - 111,323,606 (+)NCBINCBI36hg18NCBI36
Build 346111,302,680 - 111,323,599NCBI
Celera6111,942,595 - 111,963,525 (+)NCBI
Cytogenetic Map6q21NCBI
HuRef6108,767,311 - 108,788,282 (+)NCBIHuRef
CHM1_16111,459,114 - 111,480,041 (+)NCBICHM1_1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IBA,IEA,ISO,TAS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

Additional References at PubMed
PMID:1400498   PMID:1527020   PMID:1917972   PMID:2460457   PMID:2687270   PMID:7634128   PMID:7789170   PMID:8027046   PMID:8353934   PMID:8416975   PMID:10029540   PMID:10378277  
PMID:10570962   PMID:10574985   PMID:10829027   PMID:11583147   PMID:11583148   PMID:11741992   PMID:12477932   PMID:12600205   PMID:14574404   PMID:14718534   PMID:15489334   PMID:15521072  
PMID:16344560   PMID:16941339   PMID:17069747   PMID:17259861   PMID:18548481   PMID:19053272   PMID:19161160   PMID:19322201   PMID:19527050   PMID:19661236   PMID:20215859   PMID:20615890  
PMID:21134486   PMID:21873635   PMID:22008221   PMID:23260169   PMID:24652003   PMID:25277244   PMID:25281560   PMID:26186194   PMID:26558825   PMID:28514442   PMID:28611215   PMID:28658205  
PMID:29310120   PMID:29906410   PMID:31140554   PMID:32296183   PMID:33203990  


Genomics

Comparative Map Data
AMD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl6110,874,770 - 110,898,879 (+)EnsemblGRCh38hg38GRCh38
GRCh386110,814,617 - 110,895,713 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh376111,135,820 - 111,216,916 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366111,302,680 - 111,323,606 (+)NCBINCBI36hg18NCBI36
Build 346111,302,680 - 111,323,599NCBI
Celera6111,942,595 - 111,963,525 (+)NCBI
Cytogenetic Map6q21NCBI
HuRef6108,767,311 - 108,788,282 (+)NCBIHuRef
CHM1_16111,459,114 - 111,480,041 (+)NCBICHM1_1
Amd1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391040,163,454 - 40,178,184 (-)NCBIGRCm39mm39
GRCm39 Ensembl1040,163,454 - 40,178,184 (-)Ensembl
GRCm381040,287,458 - 40,302,188 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1040,287,458 - 40,302,188 (-)EnsemblGRCm38mm10GRCm38
MGSCv371040,007,265 - 40,021,992 (-)NCBIGRCm37mm9NCBIm37
MGSCv361039,976,874 - 39,991,588 (-)NCBImm8
Celera1036,613,234 - 36,615,716 (-)NCBICelera
Cytogenetic Map10B1NCBI
cM Map1021.85NCBI
Amd1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.22043,695,783 - 43,711,476 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl2043,697,237 - 43,711,476 (-)Ensembl
Rnor_6.02045,384,000 - 45,399,694 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2045,384,000 - 45,399,694 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02047,103,749 - 47,119,386 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42044,452,475 - 44,468,111 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.12044,475,485 - 44,491,122 (-)NCBI
Celera2044,399,688 - 44,415,381 (-)NCBICelera
Cytogenetic Map20q12NCBI
Amd1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541135,541,517 - 35,563,209 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541135,541,517 - 35,563,209 (+)NCBIChiLan1.0ChiLan1.0
AMD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.16112,761,072 - 112,782,074 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6112,761,072 - 112,782,074 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v06108,678,741 - 108,699,695 (+)NCBIMhudiblu_PPA_v0panPan3
AMD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11267,432,871 - 67,453,791 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1267,448,141 - 67,451,696 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1267,251,123 - 67,272,026 (+)NCBI
ROS_Cfam_1.01268,311,059 - 68,331,965 (+)NCBI
UMICH_Zoey_3.11267,662,003 - 67,682,902 (+)NCBI
UNSW_CanFamBas_1.01267,507,932 - 67,528,835 (+)NCBI
UU_Cfam_GSD_1.01267,786,118 - 67,807,019 (+)NCBI
Amd1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946102,381,927 - 102,400,701 (+)NCBI
SpeTri2.0NW_0049365646,656,789 - 6,675,564 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl176,839,731 - 76,863,738 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1176,839,448 - 76,863,745 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2186,399,564 - 86,423,858 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AMD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11362,977,659 - 62,999,150 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604035,281,244 - 35,302,558 (-)NCBIVero_WHO_p1.0
Amd1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046249161,837,258 - 1,855,450 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH46841  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376111,216,627 - 111,216,814UniSTSGRCh37
Build 366111,323,320 - 111,323,507RGDNCBI36
Celera6111,963,239 - 111,963,426RGD
Cytogenetic Map6q21UniSTS
HuRef6108,787,996 - 108,788,183UniSTS
GDB:192496  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37Y59,162,345 - 59,162,430UniSTSGRCh37
GRCh37X155,059,339 - 155,059,424UniSTSGRCh37
GRCh376111,196,071 - 111,196,209UniSTSGRCh37
Build 36X154,712,533 - 154,712,618RGDNCBI36
CeleraX155,215,774 - 155,215,859RGD
Celera6111,942,679 - 111,942,817UniSTS
Cytogenetic MapYq12UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map6q21UniSTS
HuRefX143,542,251 - 143,542,336UniSTS
HuRef6108,767,395 - 108,767,533UniSTS
D6S2429  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376111,216,633 - 111,216,810UniSTSGRCh37
Build 366111,323,326 - 111,323,503RGDNCBI36
Celera6111,963,245 - 111,963,422RGD
Cytogenetic Map6q21UniSTS
HuRef6108,788,002 - 108,788,179UniSTS
SGC30337  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376111,215,232 - 111,215,381UniSTSGRCh37
Build 366111,321,925 - 111,322,074RGDNCBI36
Celera6111,961,844 - 111,961,993RGD
Cytogenetic Map6q21UniSTS
HuRef6108,786,601 - 108,786,750UniSTS
GeneMap99-GB4 RH Map6486.68UniSTS
Whitehead-RH Map6695.6UniSTS
RH46760  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh376111,215,698 - 111,215,880UniSTSGRCh37
Build 366111,322,391 - 111,322,573RGDNCBI36
Celera6111,962,310 - 111,962,492RGD
Cytogenetic Map6q21UniSTS
HuRef6108,787,067 - 108,787,249UniSTS
GeneMap99-GB4 RH Map6486.76UniSTS
RH46508  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371182,800,521 - 82,800,646UniSTSGRCh37
GRCh376111,210,699 - 111,210,824UniSTSGRCh37
Build 366111,317,392 - 111,317,517RGDNCBI36
Celera6111,957,310 - 111,957,435RGD
Celera1180,110,287 - 80,110,412UniSTS
Cytogenetic Map6q21UniSTS
HuRef1179,097,743 - 79,097,868UniSTS
HuRef6108,782,067 - 108,782,192UniSTS
GeneMap99-GB4 RH Map11298.55UniSTS
RH98425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6q21UniSTS
D8S2279  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map21q22.12UniSTS
Cytogenetic Map15q13UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map15q22.3UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map21q21.3UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map17q24.2UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map7p14.1UniSTS
Cytogenetic Map2q22.3UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map12q24.1UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map2p25.2UniSTS
Cytogenetic Map3p24.3UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q14UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map1p36.32UniSTS
Cytogenetic Map1q42.12UniSTS
Cytogenetic Map7q21.11UniSTS
Cytogenetic Map9q34.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map8q22.3UniSTS
Cytogenetic Map6p21.1-p12UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map7p21.3UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map1q12UniSTS
Cytogenetic Map8p23UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map13q14.1-q14.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map3q13.1-q13.2UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map14q32.3UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map17q11UniSTS
Cytogenetic Map17p13.1-p12UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map14q23.3UniSTS
Cytogenetic Map17p12-p11.2UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXp22.2UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map3q27UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map14q31-q32UniSTS
Cytogenetic Map5p15.33UniSTS
Cytogenetic Map1q23.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2q32.3UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map4q32.2UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map5q14.2UniSTS
Cytogenetic Map4q32.1UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3p21.1UniSTS
Cytogenetic Map16q22.2UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map6q22UniSTS
Cytogenetic Map10p15.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map22q12.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p22.1UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map1p35.2UniSTS
Cytogenetic MapYp11.2UniSTS
Cytogenetic Map13q13.1UniSTS
Cytogenetic Map20q11.22UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map18q12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map3q27.2UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map17q21.2-q21.3UniSTS
Cytogenetic Map5q32-q34UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map3q21.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map1q32.3UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map13q14.3UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map8p22-p21UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map12q21.33UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map9q22.3UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map22q13.31-q13.33UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map7q32.2UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map14q31-q32.1UniSTS
Cytogenetic Map1q42.11UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic MapXp11.3UniSTS
Cytogenetic Map2q11.2-q12.1UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map20p11.23-p11.21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map1q44UniSTS
Cytogenetic Map9q22.33UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map9q21.32UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map20q12UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map2q21.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map17q22.2UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map12q24.11UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map10q11.1UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map7q34-q35UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map6p25.1-p23UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map18q12.1-q21.1UniSTS
Cytogenetic Map12p13.1UniSTS
Cytogenetic Map13q12.1UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map6p21.32UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map12p13.1-p12.3UniSTS
Cytogenetic Map3p25.2UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map3p21.2UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic MapXp21.2UniSTS
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Cytogenetic Map12p13.32UniSTS
Cytogenetic Map9p21.1UniSTS
Cytogenetic Map9q34.2-q34.3UniSTS
D1S1425  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p33UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map4q21.23UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map1q23.1UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map7p22.2UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map3q21.3UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map8q12.1UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map10p12UniSTS
Cytogenetic Map12q13UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map8q24UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map6q25.2-q25.3UniSTS
Cytogenetic Map20q11.2-q13.2UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map1q21-q23UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map2p23-p22UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map16q12.1UniSTS
Cytogenetic Map17q22-q23UniSTS
Cytogenetic Map2p11.1UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map2p12-p11.2UniSTS
Cytogenetic Map3q11.1UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map17q11.2-q12UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map1p32-p31UniSTS
Cytogenetic Map1p21.3UniSTS
Cytogenetic Map1q32.2UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map18p11.3-p11.2UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map9q33.2UniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map12p12.2-p11.2UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map19p13.3-p13.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map17q22-q23.2UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map4q21.21UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map14q24.2UniSTS
Cytogenetic Map20q13.33UniSTS
Cytogenetic Map3p21UniSTS
Cytogenetic Map10p11.23UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map18q12.1UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map13q12.11UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map12p12UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic MapXq12-q13UniSTS
Cytogenetic Map22q11.2UniSTS
Cytogenetic Map7q31.1-q31.3UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map2p24UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map12q13.11-q14.3UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map9q21.33UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map8q24.22UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map6q25.2-q27UniSTS
Cytogenetic Map12q24.32UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map12q23-q24.1UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map14q21UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic Map8p21.1UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map3q25.33UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic Map19p13.1UniSTS
Cytogenetic Map5q14.1UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map7p21.1UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map15q11-q12UniSTS
Cytogenetic Map3p22.2UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q21.1-q21.2UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map4q13.3UniSTS
Cytogenetic Map19p13.13UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map17q24.3UniSTS
Cytogenetic Map12p13.33UniSTS
Cytogenetic Map11q14.1UniSTS
Cytogenetic Map3p22-p21.3UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map19q13.33-q13.41UniSTS
Cytogenetic Map2p25.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map5p12UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map7q35UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map7q11.1UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map4q31.21UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic MapXq22.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map1p22.2UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map1q24.2UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map1q23.3UniSTS
Cytogenetic Map16p12UniSTS
Cytogenetic Map10p15-p14UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map1q22-q23UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p22.3UniSTS
Cytogenetic Map6p21.2UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p33-p32UniSTS
Cytogenetic Map5q35.2UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map3q26.1-q26.2UniSTS
Cytogenetic Map12p13UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map16p12.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p13.2UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map22q11.23UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map1q42.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q15UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map10q24.32UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map18q11.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map15q24-q25UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map6pter-p12.1UniSTS
Cytogenetic Map6q16UniSTS
Cytogenetic Map12q14.1UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic Map11q23.1-q23.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map11q24.3UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map16q24.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map8q22.1UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map5q23.3-q31.1UniSTS
Cytogenetic Map1p36UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map20q11UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map1q42UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map20q13.32UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic MapXq21.1UniSTS

miRNA Target Status

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR762hsa-miR-762Mirtarbaseexternal_infoLuciferase reporter assayFunctional MTI22391449

Predicted Target Of
Summary Value
Count of predictions:2419
Count of miRNA genes:567
Interacting mature miRNAs:611
Transcripts:ENST00000368876, ENST00000368877, ENST00000368882, ENST00000368885, ENST00000451850, ENST00000465404
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 1 5
Medium 2438 2742 1650 552 1813 393 4310 2055 3665 408 1454 1612 175 1 1203 2742 6 2
Low 1 249 76 72 138 72 46 142 69 11 1 1 1 46
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001287214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287215 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287216 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_109768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_171681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA808049 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002603 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ420527 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ420567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK026205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK125644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK130474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK300330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK304351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK316471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL357515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL365206 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL832698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AU134914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC000171 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC041345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX640599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M21154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  S47803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  Z84480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000368876   ⟹   ENSP00000357870
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,875,575 - 110,895,713 (+)Ensembl
RefSeq Acc Id: ENST00000368877   ⟹   ENSP00000357871
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,874,785 - 110,893,982 (+)Ensembl
RefSeq Acc Id: ENST00000368882   ⟹   ENSP00000357877
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,874,784 - 110,895,708 (+)Ensembl
RefSeq Acc Id: ENST00000368885   ⟹   ENSP00000357880
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,874,785 - 110,895,713 (+)Ensembl
RefSeq Acc Id: ENST00000451850   ⟹   ENSP00000389988
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,874,770 - 110,895,713 (+)Ensembl
RefSeq Acc Id: ENST00000465404   ⟹   ENSP00000433396
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,892,825 - 110,894,061 (+)Ensembl
RefSeq Acc Id: ENST00000612642
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,888,286 - 110,895,712 (+)Ensembl
RefSeq Acc Id: ENST00000619590
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,890,789 - 110,895,704 (+)Ensembl
RefSeq Acc Id: ENST00000672937   ⟹   ENSP00000500249
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,874,785 - 110,898,879 (+)Ensembl
RefSeq Acc Id: ENST00000675380   ⟹   ENSP00000502112
RefSeq Status:
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p13 Ensembl6110,874,784 - 110,895,708 (+)Ensembl
RefSeq Acc Id: NM_001287214   ⟹   NP_001274143
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,874,784 - 110,895,713 (+)NCBI
HuRef6108,706,972 - 108,788,285 (+)NCBI
CHM1_16111,459,114 - 111,480,044 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287215   ⟹   NP_001274144
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,814,617 - 110,895,713 (+)NCBI
HuRef6108,706,972 - 108,788,285 (+)NCBI
CHM1_16111,398,990 - 111,480,044 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001287216   ⟹   NP_001274145
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,874,784 - 110,895,713 (+)NCBI
HuRef6108,706,972 - 108,788,285 (+)NCBI
CHM1_16111,459,114 - 111,480,044 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393406   ⟹   NP_001380335
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,874,785 - 110,895,713 (+)NCBI
RefSeq Acc Id: NM_001393407   ⟹   NP_001380336
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,874,785 - 110,895,713 (+)NCBI
RefSeq Acc Id: NM_001393408   ⟹   NP_001380337
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,874,785 - 110,895,713 (+)NCBI
RefSeq Acc Id: NM_001634   ⟹   NP_001625
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,874,785 - 110,895,713 (+)NCBI
GRCh376111,135,823 - 111,216,916 (+)NCBI
Build 366111,302,680 - 111,323,606 (+)NCBI Archive
HuRef6108,706,972 - 108,788,285 (+)NCBI
CHM1_16111,459,114 - 111,480,044 (+)NCBI
Sequence:
RefSeq Acc Id: NR_109768
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,874,785 - 110,895,713 (+)NCBI
HuRef6108,706,972 - 108,788,285 (+)NCBI
CHM1_16111,459,114 - 111,480,044 (+)NCBI
Sequence:
RefSeq Acc Id: NR_171681
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,874,785 - 110,895,713 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001625   ⟸   NM_001634
- Peptide Label: isoform 1
- UniProtKB: P17707 (UniProtKB/Swiss-Prot),   A0A088AWN0 (UniProtKB/TrEMBL),   B4DZ60 (UniProtKB/TrEMBL),   Q6N0B2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274144   ⟸   NM_001287215
- Peptide Label: isoform 4
- UniProtKB: Q5VXN5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274143   ⟸   NM_001287214
- Peptide Label: isoform 3
- UniProtKB: A0A088AWN0 (UniProtKB/TrEMBL),   B4DZ60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274145   ⟸   NM_001287216
- Peptide Label: isoform 5
- UniProtKB: B4DZ60 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000389988   ⟸   ENST00000451850
RefSeq Acc Id: ENSP00000433396   ⟸   ENST00000465404
RefSeq Acc Id: ENSP00000357871   ⟸   ENST00000368877
RefSeq Acc Id: ENSP00000357870   ⟸   ENST00000368876
RefSeq Acc Id: ENSP00000357880   ⟸   ENST00000368885
RefSeq Acc Id: ENSP00000357877   ⟸   ENST00000368882
RefSeq Acc Id: ENSP00000500249   ⟸   ENST00000672937
RefSeq Acc Id: ENSP00000502112   ⟸   ENST00000675380
RefSeq Acc Id: NP_001380335   ⟸   NM_001393406
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001380336   ⟸   NM_001393407
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001380337   ⟸   NM_001393408
- Peptide Label: isoform 6

Promoters
RGD ID:7208885
Promoter ID:EPDNEW_H10188
Type:initiation region
Name:AMD1_2
Description:adenosylmethionine decarboxylase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10192  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,814,707 - 110,814,767EPDNEW
RGD ID:7208893
Promoter ID:EPDNEW_H10192
Type:multiple initiation site
Name:AMD1_1
Description:adenosylmethionine decarboxylase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H10188  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh386110,874,785 - 110,874,845EPDNEW
RGD ID:6803764
Promoter ID:HG_KWN:54645
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000368876,   OTTHUMT00000041816,   OTTHUMT00000041817
Position:
Human AssemblyChrPosition (strand)Source
Build 366111,302,576 - 111,303,442 (+)MPROMDB
RGD ID:6851564
Promoter ID:EP73583
Type:multiple initiation site
Name:HS_AMD1
Description:S-adenosylmethionine decarboxylase 1.
SO ACC ID:SO:0000170
Source:EPD (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:NEDO full length human cDNA sequencing project.; Oligo-capping
Position:
Human AssemblyChrPosition (strand)Source
Build 366111,302,681 - 111,302,741EPD

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 6q21-23.2(chr6:108944899-132067720)x1 copy number loss See cases [RCV000051196] Chr6:108944899..132067720 [GRCh38]
Chr6:109266102..132388860 [GRCh37]
Chr6:109372795..132430553 [NCBI36]
Chr6:6q21-23.2
pathogenic
GRCh38/hg38 6q16.3-21(chr6:102356502-111049879)x1 copy number loss See cases [RCV000134806] Chr6:102356502..111049879 [GRCh38]
Chr6:102804377..111371082 [GRCh37]
Chr6:102911070..111477775 [NCBI36]
Chr6:6q16.3-21
pathogenic
GRCh38/hg38 6q21-22.1(chr6:107370141-115827482)x1 copy number loss See cases [RCV000138006] Chr6:107370141..115827482 [GRCh38]
Chr6:107691345..116148646 [GRCh37]
Chr6:107798038..116255339 [NCBI36]
Chr6:6q21-22.1
pathogenic
GRCh38/hg38 6q13-24.1(chr6:74382807-142040500)x3 copy number gain See cases [RCV000139729] Chr6:74382807..142040500 [GRCh38]
Chr6:75092523..142361637 [GRCh37]
Chr6:75149243..142403330 [NCBI36]
Chr6:6q13-24.1
pathogenic
GRCh38/hg38 6q16.1-22.31(chr6:96609994-122161548)x1 copy number loss See cases [RCV000139465] Chr6:96609994..122161548 [GRCh38]
Chr6:97057870..122482694 [GRCh37]
Chr6:97164591..122524393 [NCBI36]
Chr6:6q16.1-22.31
pathogenic
GRCh38/hg38 6q21-22.31(chr6:106503719-125781219)x1 copy number loss See cases [RCV000141587] Chr6:106503719..125781219 [GRCh38]
Chr6:106951594..126102365 [GRCh37]
Chr6:107058287..126144058 [NCBI36]
Chr6:6q21-22.31
pathogenic
GRCh38/hg38 6q21(chr6:110020558-111200711)x3 copy number gain See cases [RCV000141546] Chr6:110020558..111200711 [GRCh38]
Chr6:110341761..111521914 [GRCh37]
Chr6:110448454..111628607 [NCBI36]
Chr6:6q21
uncertain significance
GRCh38/hg38 6q16.3-21(chr6:103279465-113934239)x1 copy number loss See cases [RCV000142287] Chr6:103279465..113934239 [GRCh38]
Chr6:103727340..114255403 [GRCh37]
Chr6:103834033..114362096 [NCBI36]
Chr6:6q16.3-21
pathogenic
GRCh38/hg38 6q16.3-22.31(chr6:100054889-120488154)x1 copy number loss See cases [RCV000143227] Chr6:100054889..120488154 [GRCh38]
Chr6:100502765..120809300 [GRCh37]
Chr6:100609486..120850999 [NCBI36]
Chr6:6q16.3-22.31
pathogenic
GRCh37/hg19 6q21(chr6:111185776-111216743)x3 copy number gain See cases [RCV000446798] Chr6:111185776..111216743 [GRCh37]
Chr6:6q21
benign
GRCh37/hg19 6q21(chr6:109564793-112223595)x1 copy number loss See cases [RCV000447293] Chr6:109564793..112223595 [GRCh37]
Chr6:6q21
uncertain significance
GRCh37/hg19 6q14.3-22.31(chr6:85988428-120548687)x1 copy number loss See cases [RCV000445666] Chr6:85988428..120548687 [GRCh37]
Chr6:6q14.3-22.31
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482)x3 copy number gain See cases [RCV000512067] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:156975-170919482) copy number gain See cases [RCV000510595] Chr6:156975..170919482 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6q21(chr6:111078505-111207128)x3 copy number gain See cases [RCV000511021] Chr6:111078505..111207128 [GRCh37]
Chr6:6q21
uncertain significance
GRCh37/hg19 6q21(chr6:110419878-111698827)x1 copy number loss not provided [RCV000682707] Chr6:110419878..111698827 [GRCh37]
Chr6:6q21
uncertain significance
GRCh37/hg19 6q16.1-22.1(chr6:95549951-116684929)x1 copy number loss not provided [RCV000682693] Chr6:95549951..116684929 [GRCh37]
Chr6:6q16.1-22.1
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:108666-170980171)x3 copy number gain not provided [RCV000745403] Chr6:108666..170980171 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:60107-171054786)x3 copy number gain not provided [RCV000745400] Chr6:60107..171054786 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6p25.3-q27(chr6:165632-170919470)x3 copy number gain not provided [RCV000745404] Chr6:165632..170919470 [GRCh37]
Chr6:6p25.3-q27
pathogenic
GRCh37/hg19 6q21-22.31(chr6:110981075-119608396)x1 copy number loss not provided [RCV000848701] Chr6:110981075..119608396 [GRCh37]
Chr6:6q21-22.31
pathogenic
GRCh37/hg19 6q21(chr6:109564694-112232351)x1 copy number loss not provided [RCV001007557] Chr6:109564694..112232351 [GRCh37]
Chr6:6q21
uncertain significance
NM_015076.5(CDK19):c.82G>C (p.Gly28Arg) single nucleotide variant Developmental and epileptic encephalopathy, 87 [RCV001252678]|not provided [RCV001250465] Chr6:110815055 [GRCh38]
Chr6:111136258 [GRCh37]
Chr6:6q21
pathogenic
NM_015076.5(CDK19):c.92C>A (p.Thr31Asn) single nucleotide variant Developmental and epileptic encephalopathy, 87 [RCV001250507] Chr6:110815045 [GRCh38]
Chr6:111136248 [GRCh37]
Chr6:6q21
likely pathogenic
NM_015076.5(CDK19):c.95A>G (p.Tyr32Cys) single nucleotide variant Developmental and epileptic encephalopathy, 87 [RCV001252680] Chr6:110815042 [GRCh38]
Chr6:111136245 [GRCh37]
Chr6:6q21
likely pathogenic
NM_015076.5(CDK19):c.94T>C (p.Tyr32His) single nucleotide variant Developmental and epileptic encephalopathy, 87 [RCV001195090] Chr6:110815043 [GRCh38]
Chr6:111136246 [GRCh37]
Chr6:6q21
pathogenic
NM_015076.5(CDK19):c.83G>C (p.Gly28Ala) single nucleotide variant not provided [RCV001250468] Chr6:110815054 [GRCh38]
Chr6:111136257 [GRCh37]
Chr6:6q21
likely pathogenic
GRCh37/hg19 6q16.3-22.1(chr6:101296547-117004249)x3 copy number gain Microcephaly [RCV001251053] Chr6:101296547..117004249 [GRCh37]
Chr6:6q16.3-22.1
pathogenic
NM_015076.5(CDK19):c.82G>A (p.Gly28Arg) single nucleotide variant Developmental and epileptic encephalopathy, 87 [RCV001252679] Chr6:110815055 [GRCh38]
Chr6:111136258 [GRCh37]
Chr6:6q21
pathogenic
GRCh37/hg19 6q16.1-21(chr6:98949950-114533905)x1 copy number loss Deletion 6q16 q21 [RCV001263224] Chr6:98949950..114533905 [GRCh37]
Chr6:6q16.1-21
pathogenic
GRCh37/hg19 6q21(chr6:109796301-113083437)x3 copy number gain See cases [RCV001353182] Chr6:109796301..113083437 [GRCh37]
Chr6:6q21
uncertain significance

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:457 AgrOrtholog
COSMIC AMD1 COSMIC
Ensembl Genes ENSG00000123505 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSP00000357870 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000357871 ENTREZGENE, UniProtKB/TrEMBL
  ENSP00000357877 UniProtKB/Swiss-Prot
  ENSP00000357880 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSP00000389988 UniProtKB/TrEMBL
  ENSP00000500249 UniProtKB/TrEMBL
  ENSP00000502112 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENST00000368876 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000368877 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000368882 UniProtKB/Swiss-Prot
  ENST00000368885 ENTREZGENE, UniProtKB/Swiss-Prot
  ENST00000451850 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000672937 UniProtKB/TrEMBL
  ENST00000675380 ENTREZGENE, UniProtKB/TrEMBL
GTEx ENSG00000123505 GTEx
HGNC ID HGNC:457 ENTREZGENE
Human Proteome Map AMD1 Human Proteome Map
InterPro S-AdoMet_decarboxylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S-AdoMet_deCO2ase_core UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  S-AdoMet_deCO2ase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:262 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 262 ENTREZGENE
OMIM 180980 OMIM
PANTHER PTHR11570 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SAM_decarbox UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA24763 PharmGKB
PIRSF S-AdenosylMet_decarboxylase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ADOMETDC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF56276 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs SAM_DCase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A088AWN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A5F9ZHD5_HUMAN UniProtKB/TrEMBL
  B4DZ60 ENTREZGENE, UniProtKB/TrEMBL
  DCAM_HUMAN UniProtKB/Swiss-Prot
  F6R5I9_HUMAN UniProtKB/TrEMBL
  P17707 ENTREZGENE
  Q5VXN5 ENTREZGENE, UniProtKB/TrEMBL
  Q6N0B2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6NNH3 UniProtKB/TrEMBL
  B4DTR6 UniProtKB/TrEMBL
  E1P5F7 UniProtKB/Swiss-Prot
  Q5VXN4 UniProtKB/Swiss-Prot
  Q5VXN6 UniProtKB/Swiss-Prot
  Q9BWK4 UniProtKB/Swiss-Prot