Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:spermidine biosynthetic process
go back to main search page
Accession:GO:0008295 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane.
Synonyms:exact_synonym: spermidine anabolism;   spermidine biosynthesis;   spermidine formation;   spermidine synthesis
 xref: MetaCyc:BSUBPOLYAMSYN-PWY;   MetaCyc:POLYAMINSYN3-PWY


show annotations for term's descendants           Sort by:
 
spermidine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agmat agmatinase IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr 5:160,306,754...160,321,951
Ensembl chr 5:160,306,727...160,321,066
JBrowse link
G Amd1 adenosylmethionine decarboxylase 1 IDA
IBA
ISO
IMP
PMID:21873635
(MGI:3584197|PMID:11856372)
RGD PMID:11856372, PMID:10430362, PMID:21873635, PMID:1415709, PMID:10712236 MGI:3584197, RGD:1578320, RGD:13792537, RGD:7242912, RGD:7242911 NCBI chr20:45,384,000...45,399,694
Ensembl chr20:45,384,000...45,399,694
JBrowse link
G LOC100912604 spermidine synthase-like IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:14,588,818...14,591,980
Ensembl chr 3:14,588,870...14,591,974
JBrowse link
G Srm spermidine synthase IDA
IBA
IMP
ISO
PMID:21873635
(PMID:17585781)
RGD PMID:17585781, PMID:12843627, PMID:21873635, PMID:16931179, PMID:8494549 RGD:1359042, RGD:13792537, RGD:7242920, RGD:7242928 NCBI chr 5:165,405,168...165,408,325
Ensembl chr 5:165,405,168...165,408,320
JBrowse link
positive regulation of spermidine biosynthetic process term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Paox polyamine oxidase ISO (PMID:16354669) RGD PMID:16354669 NCBI chr 1:212,578,444...212,603,722
Ensembl chr 1:212,578,450...212,603,529
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20045
    metabolic process 12102
      cellular metabolic process 11041
        cellular nitrogen compound metabolic process 6723
          cellular nitrogen compound biosynthetic process 5100
            amine biosynthetic process 41
              cellular biogenic amine biosynthetic process 41
                polyamine biosynthetic process 13
                  spermidine biosynthetic process 5
                    negative regulation of spermidine biosynthetic process 0
                    positive regulation of spermidine biosynthetic process 1
                    regulation of spermidine biosynthetic process + 1
Path 2
Term Annotations click to browse term
  biological_process 20045
    metabolic process 12102
      organic substance metabolic process 11623
        organonitrogen compound metabolic process 7014
          amine metabolic process 122
            cellular amine metabolic process 114
              cellular biogenic amine metabolic process 101
                polyamine metabolic process 19
                  polyamine biosynthetic process 13
                    spermidine biosynthetic process 5
                      negative regulation of spermidine biosynthetic process 0
                      positive regulation of spermidine biosynthetic process 1
                      regulation of spermidine biosynthetic process + 1
paths to the root