Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:amino-acid betaine biosynthetic process
go back to main search page
Accession:GO:0006578 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of any betaine, the N-trimethyl derivative of an amino acid.
Synonyms:exact_synonym: betaine anabolism;   betaine biosynthesis;   betaine biosynthetic process;   betaine formation;   betaine synthesis


show annotations for term's descendants           Sort by:
carnitine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO
IEA		 (PMID:16972171)
GO_REF:0000107		 RGD
Ensembl		 PMID:16972171 GO_REF:0000107 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147 		JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 involved_in TAS
IEA
ISO		 GO_REF:0000041
GO_REF:0000107
(PMID:10702312)		 UniProt
Ensembl
RGD		 PMID:10702312 PMID:10702312 GO_REF:0000041 GO_REF:0000107, RGD:68317 NCBI chr13:79,505,738...79,522,539
Ensembl chr13:79,505,695...79,540,568 		JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 involved_in TAS
IEA
ISO
ISS
IBA		 GO_REF:0000041
(PMID:20599753), (PMID:9753662)
GO_REF:0000024
MGI:104740 (PMID:17692817), (PMID:18945875)
GO_REF:0000033		 UniProt
RGD
GO_Central		 PMID:9753662 PMID:17692817 PMID:18945875 PMID:20599753 PMID:10526231 More... GO_REF:0000024 GO_REF:0000033 GO_REF:0000041, RGD:632240, RGD:8554503 NCBI chr 3:96,822,654...96,871,786
Ensembl chr 3:96,822,655...96,871,458 		JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon involved_in
acts_upstream_of_or_within		 TAS
ISO
IEA
ISS
IBA		 (PMID:23092983)
(PMID:15754339)
GO_REF:0000041
GO_REF:0000024
(PMID:37553674)
(PMID:12121276)
GO_REF:0000033		 RGD
UniProt
GO_Central		 PMID:12121276 PMID:15754339 PMID:23092983 PMID:37553674 PMID:11431483 GO_REF:0000024 GO_REF:0000033 GO_REF:0000041, RGD:70558 NCBI chr20:91,234...138,942
Ensembl chr20:91,272...140,386 		JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:50,003,242...50,042,193
Ensembl chr18:50,009,934...50,042,193 		JBrowse link
G Chdh choline dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:5,194,269...5,225,541
Ensembl chr16:5,194,269...5,225,537 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      cellular metabolic process 9554
        cellular modified amino acid metabolic process 181
          amino-acid betaine metabolic process 19
            amino-acid betaine biosynthetic process 6
              L-proline betaine biosynthetic process 0
              N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process + 0
              carnitine biosynthetic process 4
              ergothioneine biosynthetic process + 0
              glycine betaine biosynthetic process + 2
              selenoneine biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11456
      biosynthetic process 8172
        organic substance biosynthetic process 8107
          organonitrogen compound biosynthetic process 2087
            cellular modified amino acid biosynthetic process 41
              amino-acid betaine biosynthetic process 6
                L-proline betaine biosynthetic process 0
                N-alpha,N-alpha,N-alpha-trimethyl-L-histidine biosynthetic process + 0
                carnitine biosynthetic process 4
                ergothioneine biosynthetic process + 0
                glycine betaine biosynthetic process + 2
                selenoneine biosynthetic process 0
paths to the root