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ONTOLOGY REPORT - ANNOTATIONS

Term:cellular modified amino acid biosynthetic process
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Accession:GO:0042398 term browser browse the term
Definition:The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents.
Synonyms:exact_synonym: amino acid derivative biosynthetic process;   cellular amino acid derivative anabolism;   cellular amino acid derivative biosynthesis;   cellular amino acid derivative biosynthetic process;   cellular amino acid derivative formation;   cellular amino acid derivative synthesis;   cellular modified amino acid anabolism;   cellular modified amino acid biosynthesis;   cellular modified amino acid formation;   cellular modified amino acid synthesis


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carnitine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain involved_in ISO (PMID:16972171) RGD PMID:16972171 NCBI chr 2:242,858,865...242,883,036
Ensembl chr 2:242,858,865...242,883,147 		JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 involved_in TAS
IEA		 GO_REF:0000041 UniProt
RGD		 PMID:10702312 GO_REF:0000041, RGD:68317 NCBI chr13:79,505,738...79,522,539
Ensembl chr13:79,505,695...79,540,568 		JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 involved_in TAS
IBA
ISS
ISO
IEA		 PMID:21873635
PMID:9753662
GO_REF:0000024
(PMID:20599753), (PMID:9753662)
GO_REF:0000041		 UniProt
RGD		 PMID:9753662 PMID:20599753 PMID:10526231 PMID:21873635 PMID:9753662 GO_REF:0000024 GO_REF:0000041, RGD:632240, RGD:13792537, RGD:8554503 NCBI chr 3:96,822,654...96,871,786
Ensembl chr 3:96,822,655...96,871,458 		JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon involved_in
acts_upstream_of_or_within		 TAS
IBA
ISS
ISO
IEA		 PMID:21873635
GO_REF:0000024
(MGI:2183690|PMID:12121276)
GO_REF:0000041
(PMID:15754339)
(PMID:23092983)		 UniProt
RGD		 PMID:12121276 PMID:15754339 PMID:23092983 PMID:11431483 PMID:21873635 GO_REF:0000024 GO_REF:0000041 MGI:2183690, RGD:70558, RGD:13792537 NCBI chr20:91,234...138,942
Ensembl chr20:91,272...140,386 		JBrowse link
creatine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gamt guanidinoacetate N-methyltransferase acts_upstream_of_or_within
involved_in		 IDA
ISO
IBA
IEA
TAS		 MGI:3044282 (MGI:3043413|PMID:15028668)
PMID:21873635
(PMID:8651275)
GO_REF:0000041		 RGD
UniProt		 PMID:8651275 PMID:15028668 PMID:15533043 PMID:21873635 PMID:12079381 GO_REF:0000041 MGI:3043413, RGD:1359081, RGD:13792537, RGD:632754 NCBI chr 7:9,448,590...9,451,778
Ensembl chr 7:9,448,628...9,451,778 		JBrowse link
G Gatm glycine amidinotransferase involved_in
acts_upstream_of_or_within		 TAS
IEA
ISO
IBA		 GO_REF:0000041
(PMID:9218780)
PMID:21873635		 UniProt
RGD		 PMID:9218780 PMID:8021264 PMID:21873635 GO_REF:0000041, RGD:70746, RGD:13792537 NCBI chr 3:109,658,919...109,675,508
Ensembl chr 3:109,658,951...109,684,129 		JBrowse link
folic acid-containing compound biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfs methenyltetrahydrofolate synthetase involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:89,729,498...89,801,998
Ensembl chr 8:89,729,508...89,799,089 		JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:50,003,242...50,042,193
Ensembl chr18:50,009,934...50,042,193 		JBrowse link
G Chdh choline dehydrogenase involved_in IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:5,194,269...5,225,541
Ensembl chr16:5,194,269...5,225,537 		JBrowse link
hydroxylysine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plod2 procollagen lysine, 2-oxoglutarate 5-dioxygenase 2 involved_in ISO
IEA		 (PMID:10934207)
GO_REF:0000107		 RGD
Ensembl		 PMID:10934207 GO_REF:0000107 NCBI chr 8:93,084,548...93,167,255
Ensembl chr 8:93,084,513...93,167,255 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 involved_in ISO (MGI:6202004|PMID:16447251) RGD PMID:16447251 MGI:6202004 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960 		JBrowse link
phosphatidylserine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Plscr1 phospholipid scramblase 1 involved_in ISO (MGI:5284813|PMID:12509439) RGD PMID:12509439 MGI:5284813 NCBI chr 8:92,784,279...92,804,698
Ensembl chr 8:92,784,356...92,804,692 		JBrowse link
G Ptdss1 phosphatidylserine synthase 1 involved_in ISO
IEA		 (PMID:19014349)
GO_REF:0000041		 RGD
UniProt		 PMID:19014349 GO_REF:0000041 NCBI chr 7:63,845,017...63,906,791
Ensembl chr 7:63,844,268...63,906,791 		JBrowse link
G Ptdss2 phosphatidylserine synthase 2 involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:19014349)
GO_REF:0000041
MGI:2447151 (MGI:2446765|PMID:12361952)		 RGD
UniProt		 PMID:12361952 PMID:19014349 GO_REF:0000041 MGI:2446765 NCBI chr 1:196,241,439...196,267,632
Ensembl chr 1:196,241,494...196,267,685 		JBrowse link
G Slc27a1 solute carrier family 27 member 1 involved_in IBA
ISO		 PMID:21873635
(PMID:19523918)		 RGD PMID:19523918 PMID:21873635 RGD:13792537 NCBI chr16:18,278,984...18,300,173
Ensembl chr16:18,278,984...18,296,063 		JBrowse link
phosphocreatine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ckb creatine kinase B involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 6:130,729,420...130,732,301
Ensembl chr 6:130,729,423...130,732,315 		JBrowse link
G Ckm creatine kinase, M-type involved_in
acts_upstream_of_or_within		 TAS
IDA
IBA
ISO
IEA		 PMID:21873635
(MGI:3513707|PMID:15601660)
GO_REF:0000107		 RGD
Ensembl		 PMID:15601660 PMID:6209281 PMID:12069495 PMID:21873635 GO_REF:0000107 MGI:3513707, RGD:727227, RGD:1359082, RGD:13792537 NCBI chr 1:79,061,390...79,071,721
Ensembl chr 1:79,061,456...79,071,720 		JBrowse link
G Ckmt1 creatine kinase, mitochondrial 1 involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 3:108,329,859...108,335,760
Ensembl chr 3:108,330,705...108,335,758 		JBrowse link
G Ckmt2 creatine kinase, mitochondrial 2 involved_in IBA
IEA		 PMID:21873635
GO_REF:0000002		 InterPro PMID:21873635 GO_REF:0000002, RGD:13792537 NCBI chr 2:23,079,920...23,110,518
Ensembl chr 2:23,079,918...23,110,430 		JBrowse link
positive regulation of L-dopa biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Park7 Parkinsonism associated deglycase involved_in ISO
ISS		 (PMID:16731528)
GO_REF:0000024		 RGD
ParkinsonsUK-UCL		 PMID:16731528 GO_REF:0000024 NCBI chr 5:161,353,718...161,376,993
Ensembl chr 5:161,353,719...161,376,970 		JBrowse link
tetrahydrofolate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1l1 aldehyde dehydrogenase 1 family, member L1 TAS RGD PMID:14729668 RGD:1547843 NCBI chr 4:123,059,989...123,106,471
Ensembl chr 4:123,060,008...123,106,465 		JBrowse link
G Atic 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase IDA RGD PMID:7057182 RGD:2301991 NCBI chr 9:73,164,846...73,184,897
Ensembl chr 9:73,164,846...73,184,889 		JBrowse link
G Dhfr dihydrofolate reductase involved_in IDA
ISO
IEA
IBA		 (PMID:2303423)
GO_REF:0000041
PMID:21873635		 RGD
UniProt		 PMID:2303423 PMID:11502523 PMID:21873635 GO_REF:0000041, RGD:1298877, RGD:13792537 NCBI chr 2:23,585,876...23,611,199
Ensembl chr 2:23,586,031...23,613,713 		JBrowse link
G Gart phosphoribosylglycinamide formyltransferase, phosphoribosylglycinamide synthetase, phosphoribosylaminoimidazole synthetase IDA RGD PMID:4078017 RGD:2301990 NCBI chr11:30,864,896...30,891,125
Ensembl chr11:30,865,889...30,891,125 		JBrowse link
G Gch1 GTP cyclohydrolase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr15:20,404,267...20,437,727
Ensembl chr15:20,402,527...20,437,698 		JBrowse link
tetrahydrofolylpolyglutamate biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fpgs folylpolyglutamate synthase involved_in IEA
ISO		 GO_REF:0000041
(PMID:25164808)
(PMID:3619447)		 UniProt
RGD		 PMID:3619447 PMID:25164808 GO_REF:0000041 NCBI chr 3:15,972,800...15,993,592
Ensembl chr 3:15,972,800...15,993,563 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19738
    metabolic process 12010
      cellular metabolic process 7444
        cellular modified amino acid metabolic process 126
          cellular modified amino acid biosynthetic process 26
            4-hydroxyproline biosynthetic process 0
            L-dopa biosynthetic process + 1
            O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthetic process 0
            S-methylmethionine biosynthetic process 0
            aerobactin biosynthetic process 0
            amino-acid betaine biosynthetic process + 6
            cellular modified histidine biosynthetic process + 0
            coenzyme B biosynthetic process 0
            creatine biosynthetic process 2
            folic acid-containing compound biosynthetic process + 7
            hydroxylysine biosynthetic process 2
            lincomycin biosynthetic process 0
            ochratoxin A biosynthetic process 0
            pantothenate biosynthetic process 0
            peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine + 0
            peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine 0
            phosphagen biosynthetic process + 4
            phosphatidylserine biosynthetic process + 4
            prenylcysteine biosynthetic process 0
            pyrrolysine biosynthetic process 0
            sarcosine biosynthetic process 0
Path 2
Term Annotations click to browse term
  biological_process 19738
    metabolic process 12010
      organic substance metabolic process 11557
        organonitrogen compound metabolic process 6750
          cellular modified amino acid metabolic process 126
            cellular modified amino acid biosynthetic process 26
              4-hydroxyproline biosynthetic process 0
              L-dopa biosynthetic process + 1
              O3-(N-acetylglucosamine-1-phosphoryl)-L-serine biosynthetic process 0
              S-methylmethionine biosynthetic process 0
              aerobactin biosynthetic process 0
              amino-acid betaine biosynthetic process + 6
              cellular modified histidine biosynthetic process + 0
              coenzyme B biosynthetic process 0
              creatine biosynthetic process 2
              folic acid-containing compound biosynthetic process + 7
              hydroxylysine biosynthetic process 2
              lincomycin biosynthetic process 0
              ochratoxin A biosynthetic process 0
              pantothenate biosynthetic process 0
              peptidyl-1-thioglycine biosynthetic process from peptidyl-glycine + 0
              peptidyl-glycine cholesteryl ester biosynthesis from peptidyl-glycine 0
              phosphagen biosynthetic process + 4
              phosphatidylserine biosynthetic process + 4
              prenylcysteine biosynthetic process 0
              pyrrolysine biosynthetic process 0
              sarcosine biosynthetic process 0
paths to the root