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ONTOLOGY REPORT - ANNOTATIONS


Term:amino-acid betaine metabolic process
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Accession:GO:0006577 term browser browse the term
Definition:The chemical reactions and pathways involving any betaine, the N-trimethyl derivative of an amino acid.
Synonyms:exact_synonym: betaine metabolic process;   betaine metabolism


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amino-acid betaine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine-homocysteine S-methyltransferase ISO
IEA
(PMID:18230605)
GO_REF:0000107
RGD
Ensembl
PMID:18230605 GO_REF:0000107 NCBI chr 2:23,236,573...23,256,158
Ensembl chr 2:23,236,575...23,256,158
JBrowse link
G Bhmt2 betaine-homocysteine S-methyltransferase 2 NOT ISO (PMID:18230605) RGD PMID:18230605 NCBI chr 2:23,272,320...23,289,266
Ensembl chr 2:23,272,328...23,289,266
JBrowse link
amino-acid betaine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhmt betaine-homocysteine S-methyltransferase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:23,236,573...23,256,158
Ensembl chr 2:23,236,575...23,256,158
JBrowse link
G Dmgdh dimethylglycine dehydrogenase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr 2:23,289,376...23,370,360
Ensembl chr 2:23,289,374...23,370,477
JBrowse link
carnitine biosynthetic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain ISO (PMID:16972171) RGD PMID:16972171 NCBI chr 2:260,124,418...260,148,589
Ensembl chr 2:260,124,418...260,148,589
JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 TAS
IEA
GO_REF:0000041 UniProt PMID:10702312 GO_REF:0000041, RGD:68317 NCBI chr13:85,580,828...85,597,497
Ensembl chr13:85,580,828...85,597,493
JBrowse link
G Bbox1 gamma-butyrobetaine hydroxylase 1 TAS
IBA
ISO
ISS
IEA
PMID:21873635
(PMID:20599753), (PMID:9753662)
GO_REF:0000024
GO_REF:0000041
RGD
UniProt
PMID:9753662, PMID:20599753, PMID:10526231, PMID:21873635, PMID:9753662 GO_REF:0000024, GO_REF:0000041, RGD:632240, RGD:13792537, RGD:8554503 NCBI chr 3:101,425,684...101,474,848
Ensembl chr 3:101,427,055...101,474,890
JBrowse link
G Tmlhe trimethyllysine hydroxylase, epsilon TAS
IEA
ISS
ISO
IBA
GO_REF:0000041
GO_REF:0000024
(PMID:15754339), (PMID:23092983)
PMID:21873635
(MGI:2183690|PMID:12121276)
UniProt
RGD
PMID:12121276, PMID:15754339, PMID:23092983, PMID:11431483, PMID:21873635 GO_REF:0000024, GO_REF:0000041, MGI:2183690, RGD:70558, RGD:13792537 NCBI chr20:237,461...285,125
Ensembl chr20:237,506...284,943
JBrowse link
carnitine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadl acyl-CoA dehydrogenase, long chain ISO (MGI:1321427|PMID:9861014) RGD PMID:9861014 MGI:1321427 NCBI chr 9:73,833,368...73,871,857
Ensembl chr 9:73,833,388...73,871,888
JBrowse link
carnitine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadm acyl-CoA dehydrogenase medium chain ISO MGI:3692446 (MGI:3692159|PMID:16121256) RGD PMID:16121256 MGI:3692159 NCBI chr 2:260,124,418...260,148,589
Ensembl chr 2:260,124,418...260,148,589
JBrowse link
G Aldh9a1 aldehyde dehydrogenase 9 family, member A1 ISO (MGI:1861370|PMID:10702312) RGD PMID:10702312 MGI:1861370 NCBI chr13:85,580,828...85,597,497
Ensembl chr13:85,580,828...85,597,493
JBrowse link
G Cpt1a carnitine palmitoyltransferase 1A TAS
IBA
ISO
IDA
PMID:21873635
(PMID:11350182)
PMID:21990363
RGD PMID:11350182, PMID:12826662, PMID:21873635, PMID:21990363 RGD:1298786, RGD:13792537, RGD:8554544 NCBI chr 1:218,568,157...218,629,679
Ensembl chr 1:218,569,510...218,629,678
JBrowse link
G Cpt1b carnitine palmitoyltransferase 1B IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:130,395,211...130,404,731
Ensembl chr 7:130,395,194...130,405,347
JBrowse link
G Cpt1c carnitine palmitoyltransferase 1c IDA
IBA
PMID:21873635 RGD
GO_Central
PMID:18192268, PMID:21873635 RGD:2317579, RGD:13792537 NCBI chr 1:100,955,094...100,970,579
Ensembl chr 1:100,955,095...100,969,560
JBrowse link
G Cpt2 carnitine palmitoyltransferase 2 ISO
ISS
(PMID:20538056)
GO_REF:0000024
RGD
UniProt
PMID:20538056 GO_REF:0000024 NCBI chr 5:127,505,646...127,523,016
Ensembl chr 5:127,505,614...127,523,089
JBrowse link
G Crot carnitine O-octanoyltransferase IEA
ISO
ISS
GO_REF:0000107
(MGI:5546000|PMID:15492013)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:15492013 GO_REF:0000024, GO_REF:0000107, MGI:5546000 NCBI chr 4:22,079,837...22,116,265
Ensembl chr 4:22,081,604...22,116,265
JBrowse link
G Por cytochrome p450 oxidoreductase IEP RGD PMID:16616465 RGD:4889829 NCBI chr12:23,998,411...24,017,063
Ensembl chr12:23,998,411...24,046,814
JBrowse link
G Slc22a4 solute carrier family 22 member 4 ISO UniProtKB:Q9H015 (MGI:1352952|PMID:10655497) RGD PMID:10655497 MGI:1352952 NCBI chr10:39,334,972...39,373,508 JBrowse link
G Slc22a5 solute carrier family 22 member 5 ISO MGI:1856926 (MGI:3606365|PMID:15240869), (MGI:3692809|PMID:17027329), (MGI:61916|PMID:8325377), (MGI:67915|PMID:7914432), (MGI:78309|PMID:1996978) RGD PMID:1996978, PMID:7914432, PMID:8325377, PMID:15240869, PMID:17027329 MGI:3606365, MGI:3692809, MGI:61916, MGI:67915, MGI:78309 NCBI chr10:39,201,101...39,228,090
Ensembl chr10:39,201,107...39,323,853
JBrowse link
carnitine metabolic process, CoA-linked term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acadl acyl-CoA dehydrogenase, long chain IBA
ISO
PMID:21873635
(MGI:1321427|PMID:9861014)
RGD PMID:9861014, PMID:21873635 MGI:1321427, RGD:13792537 NCBI chr 9:73,833,368...73,871,857
Ensembl chr 9:73,833,388...73,871,888
JBrowse link
G Acadm acyl-CoA dehydrogenase medium chain ISO
IEA
(PMID:16972171)
(MGI:4412440|PMID:18459129)
GO_REF:0000107
RGD
Ensembl
PMID:16972171, PMID:18459129 GO_REF:0000107, MGI:4412440 NCBI chr 2:260,124,418...260,148,589
Ensembl chr 2:260,124,418...260,148,589
JBrowse link
G Crat carnitine O-acetyltransferase IEA
ISO
ISS
IBA
GO_REF:0000107
(PMID:15099582), (PMID:23485643), (PMID:2351134)
GO_REF:0000024
PMID:21873635
Ensembl
RGD
UniProt
PMID:2351134, PMID:15099582, PMID:23485643, PMID:21873635 GO_REF:0000024, GO_REF:0000107, RGD:13792537 NCBI chr 3:8,967,984...8,981,959
Ensembl chr 3:8,968,417...8,981,362
JBrowse link
glycine betaine biosynthetic process from choline term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh7a1 aldehyde dehydrogenase 7 family, member A1 IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr18:51,619,007...51,651,267
Ensembl chr18:51,619,007...51,651,267
JBrowse link
G Chdh choline dehydrogenase IEA GO_REF:0000041 UniProt GO_REF:0000041 NCBI chr16:6,078,083...6,109,386
Ensembl chr16:6,078,122...6,109,382
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      cellular metabolic process 11073
        cellular nitrogen compound metabolic process 6684
          amino-acid betaine metabolic process 19
            N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process + 0
            amino-acid betaine biosynthetic process + 6
            amino-acid betaine catabolic process + 3
            carnitine metabolic process + 14
            ergothioneine metabolic process + 0
            glycine betaine metabolic process + 2
            selenoneine metabolic process + 0
            stachydrine metabolic process + 0
Path 2
Term Annotations click to browse term
  biological_process 20020
    metabolic process 12263
      organic substance metabolic process 11643
        organonitrogen compound metabolic process 7134
          cellular modified amino acid metabolic process 190
            amino-acid betaine metabolic process 19
              N-alpha,N-alpha,N-alpha-trimethyl-L-histidine metabolic process + 0
              amino-acid betaine biosynthetic process + 6
              amino-acid betaine catabolic process + 3
              carnitine metabolic process + 14
              ergothioneine metabolic process + 0
              glycine betaine metabolic process + 2
              selenoneine metabolic process + 0
              stachydrine metabolic process + 0
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.