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ONTOLOGY REPORT - ANNOTATIONS


Term:DNA-directed DNA polymerase activity
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Accession:GO:0003887 term browser browse the term
Definition:Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and a 3'hydroxyl group.
Synonyms:narrow_synonym: DNA polymerase I;   DNA polymerase II;   DNA polymerase III;   DNA polymerase V activity;   DNA polymerase alpha;   DNA polymerase beta;   DNA polymerase gamma;   Klenow fragment;   Taq DNA polymerase;   Taq Pol I;   Tca DNA polymerase;   alpha DNA polymerase activity;   beta DNA polymerase activity;   delta DNA polymerase activity;   deoxyribonucleic polymerase I;   epsilon DNA polymerase activity;   eta DNA polymerase activity;   gamma DNA-directed DNA polymerase activity;   iota DNA polymerase activity;   kappa DNA polymerase activity;   lambda DNA polymerase activity;   mu DNA polymerase activity;   nu DNA polymerase activity;   sigma DNA polymerase activity;   theta DNA polymerase activity;   zeta DNA polymerase activity
 broad_synonym: duplicase
 related_synonym: DNA duplicase activity;   DNA nucleotidyltransferase (DNA-directed) activity;   DNA replicase activity;   DNA-dependent DNA polymerase activity;   deoxynucleoside-triphosphate:DNA deoxynucleotidyltransferase (DNA-directed) activity;   deoxyribonucleic acid duplicase activity;   deoxyribonucleic duplicase activity;   sequenase
 alt_id: GO:0003888;   GO:0003889;   GO:0003890;   GO:0003891;   GO:0003893;   GO:0003894;   GO:0003895;   GO:0008723;   GO:0015999;   GO:0016000;   GO:0016448;   GO:0016449;   GO:0016450;   GO:0016451;   GO:0016452;   GO:0019984
 xref: EC:2.7.7.7;   MetaCyc:DNA-DIRECTED-DNA-POLYMERASE-RXN;   Reactome:R-HSA-9710480 "Decitabine triphosphate incorporates into DNA";   reactome:R-HSA-110311 "POLZ extends translesion synthesis";   reactome:R-HSA-110317 "Insertion of correct bases opposite the lesion by POLH";   reactome:R-HSA-110319 "Elongation by POLH";   reactome:R-HSA-110368 "POLD,POLE-mediated DNA strand displacement synthesis";   reactome:R-HSA-111253 "POLB incorporates the first 3' dNMP and displaces 5'ddRP at SSB site";   reactome:R-HSA-164505 "Synthesis of full-length duplex viral DNA with a discontinuous plus strand";   reactome:R-HSA-164513 "3' PPT-primed initiation of plus-strand DNA synthesis";   reactome:R-HSA-174427 "The polymerase component of DNA polymerase alpha:primase synthesizes a 20-nucleotide primer on the G strand of the telomere";   reactome:R-HSA-174444 "Formation of C-strand Okazaki fragments";   reactome:R-HSA-5358579 "DNA polymerase delta polymerizes DNA across single stranded gap";   reactome:R-HSA-5649723 "POLB incorporates a single nucleotide in place of excised AP residue in NEIL1,NEIL2-mediated AP site resolution";   reactome:R-HSA-5649883 "POLB-mediated DNA strand displacement synthesis";   reactome:R-HSA-5653840 "POLD,POLE complete replication of damaged DNA after TLS";   reactome:R-HSA-5655892 "POLK incorporates dNMP opposite to damaged DNA base";   reactome:R-HSA-5655965 "POLK and POLZ cooperate in elongation of mispaired primer termini";   reactome:R-HSA-5656148 "POLI incorporates dNMP opposite to damaged DNA base";   reactome:R-HSA-5656158 "POLZ elongates POLI-incorporated dNMP";   reactome:R-HSA-5687360 "POLL or POLM extends aligned DNA DSB ends to fill gaps";   reactome:R-HSA-5687640 "POLQ extends annealed 3'-ssDNA overhangs in MMEJ";   reactome:R-HSA-5691001 "Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in GG-NER";   reactome:R-HSA-5693593 "D-loop extension by DNA polymerases";   reactome:R-HSA-6782208 "Repair DNA synthesis of ~27-30 bases long patch by POLD, POLE or POLK in TC-NER";   reactome:R-HSA-6786166 "Translesion synthesis across unhooked ICL by POLN";   reactome:R-HSA-68950 "The polymerase component of DNA polymerase alpha:primase synthesizes a 20-nucleotide primer at the origin";   reactome:R-HSA-69116 "Formation of Okazaki fragments";   reactome:R-HSA-73932 "Resynthesis of excised residue by POLB"



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DNA-directed DNA polymerase activity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dntt DNA nucleotidylexotransferase enables IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 1:239,856,391...239,888,283
Ensembl chr 1:239,856,391...239,888,282
JBrowse link
G Haus3 HAUS augmin-like complex, subunit 3 enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:76,580,549...76,599,542
Ensembl chr14:76,580,546...76,752,463
JBrowse link
G Pola1 DNA polymerase alpha 1, catalytic subunit enables IDA
IMP
ISS
IEA
ISO
IBA
GO_REF:0000024
GO_REF:0000003
(PMID:26975377), (PMID:3359994), (PMID:4084590), (PMID:8026492), (PMID:893425)
GO_REF:0000117
GO_REF:0000033
(PMID:8106564), (PMID:9584195)
UniProt
RGD
GO_Central
PMID:893425 PMID:3359994 PMID:4084590 PMID:8026492 PMID:8106564 More... GO_REF:0000003 GO_REF:0000024 GO_REF:0000033 GO_REF:0000117, RGD:724599, RGD:1580606, RGD:2307013 NCBI chr  X:58,034,617...58,348,612
Ensembl chr  X:58,034,619...58,348,536
JBrowse link
G Pola2 DNA polymerase alpha 2, accessory subunit IMP RGD PMID:11536367 PMID:7503737 RGD:633584, RGD:2307013 NCBI chr 1:203,227,183...203,251,350
Ensembl chr 1:203,203,388...203,251,348
JBrowse link
G Polb DNA polymerase beta enables TAS
IDA
ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:16600869), (PMID:9207062)
GO_REF:0000104
GO_REF:0000033
UniProt
RGD
GO_Central
PMID:9207062 PMID:16600869 PMID:12388548 PMID:17412650 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104, RGD:633643, RGD:2302580 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Pold1 DNA polymerase delta 1, catalytic subunit enables IDA
IMP
ISO
IEA
IBA
(PMID:16762037)
GO_REF:0000003
GO_REF:0000033
RGD
UniProt
GO_Central
PMID:16762037 PMID:9620226 PMID:7503737 PMID:11959615 PMID:10541966 GO_REF:0000003 GO_REF:0000033, RGD:2299945, RGD:2307013, RGD:7247274, RGD:729526 NCBI chr 1:95,025,462...95,041,559
Ensembl chr 1:95,025,499...95,036,465
JBrowse link
G Pold3 DNA polymerase delta 3, accessory subunit contributes_to IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:154,417,893...154,456,687
Ensembl chr 1:154,418,084...154,456,665
JBrowse link
G Pold4 DNA polymerase delta 4, accessory subunit contributes_to IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:201,526,591...201,528,406
Ensembl chr 1:201,526,665...201,528,401
JBrowse link
G Pole DNA polymerase epsilon, catalytic subunit enables IMP
ISO
IBA
(PMID:16762037)
GO_REF:0000033
RGD
GO_Central
PMID:16762037 PMID:11959615 GO_REF:0000033, RGD:7247274 NCBI chr12:46,345,420...46,393,984
Ensembl chr12:46,345,420...46,393,939
JBrowse link
G Polg DNA polymerase gamma, catalytic subunit enables IDA
IEA
ISO
IBA
GO_REF:0000107
(PMID:10608893), (PMID:11897778), (PMID:15164064), (PMID:15177179), (PMID:19837034), (PMID:19858216), (PMID:26056153), (PMID:26095671), (PMID:26123486), (PMID:26446790), (PMID:26554610), (PMID:28430993), (PMID:37202477)
GO_REF:0000033
Ensembl
RGD
GO_Central
PMID:10608893 PMID:11897778 PMID:15164064 PMID:15177179 PMID:19837034 More... GO_REF:0000033 GO_REF:0000107, RGD:724601 NCBI chr 1:133,382,764...133,399,578
Ensembl chr 1:133,382,766...133,398,567
JBrowse link
G Polg2 DNA polymerase gamma 2, accessory subunit enables ISO (PMID:10666468) RGD PMID:10666468 NCBI chr10:91,712,586...91,723,008
Ensembl chr10:91,712,586...91,723,008
JBrowse link
G Polh DNA polymerase eta enables IBA
ISO
GO_REF:0000033
(PMID:10871396)
GO_Central
RGD
PMID:10871396 GO_REF:0000033 NCBI chr 9:14,778,355...14,813,210
Ensembl chr 9:14,777,888...14,812,723
JBrowse link
G Poli DNA polymerase iota enables IBA
ISO
GO_REF:0000033
(PMID:12925679)
GO_Central
RGD
PMID:12925679 GO_REF:0000033 NCBI chr18:64,116,774...64,134,373
Ensembl chr18:64,116,774...64,163,418
JBrowse link
G Polk DNA polymerase kappa enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:27,822,228...27,882,331
Ensembl chr 2:27,822,679...27,882,313
JBrowse link
G Poll DNA polymerase lambda enables ISS
ISO
IEA
IBA
GO_REF:0000024
(PMID:19806195)
GO_REF:0000104
GO_REF:0000033
(PMID:10966791)
UniProt
RGD
GO_Central
PMID:10966791 PMID:19806195 GO_REF:0000024 GO_REF:0000033 GO_REF:0000104 NCBI chr 1:244,400,202...244,408,762
Ensembl chr 1:244,400,204...244,408,662
JBrowse link
G Polm DNA polymerase mu enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:80,707,075...80,716,677
Ensembl chr14:80,706,345...80,717,086
JBrowse link
G Poln DNA polymerase nu enables ISO
IBA
(PMID:12794064), (PMID:17118716), (PMID:19908865)
GO_REF:0000033
RGD
GO_Central
PMID:12794064 PMID:17118716 PMID:19908865 GO_REF:0000033 NCBI chr14:76,579,983...76,752,460
Ensembl chr14:76,580,546...76,752,463
JBrowse link
G Polq DNA polymerase theta enables ISO
IBA
(PMID:14576298), (PMID:22135286), (PMID:25643323), (PMID:25775267), (PMID:27311885), (PMID:27591252), (PMID:31562312), (PMID:33577776), (PMID:34140467), (PMID:34179826)
(MGI:5621198|PMID:25642960), (MGI:6869820|PMID:29058711)
GO_REF:0000033
RGD
GO_Central
PMID:14576298 PMID:22135286 PMID:25642960 PMID:25643323 PMID:25775267 More... GO_REF:0000033 MGI:5621198 MGI:6869820 NCBI chr11:63,673,796...63,775,905
Ensembl chr11:63,673,816...63,775,878
JBrowse link
G Primpol primase and DNA directed polymerase enables IBA
ISO
GO_REF:0000033
(PMID:24126761), (PMID:24207056), (PMID:25746449)
GO_Central
RGD
PMID:24126761 PMID:24207056 PMID:25746449 GO_REF:0000033 NCBI chr16:45,681,252...45,715,758
Ensembl chr16:45,681,326...45,715,565
JBrowse link
G Rev1 REV1, DNA directed polymerase enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 9:40,278,100...40,351,764
Ensembl chr 9:40,278,101...40,351,576
JBrowse link
G Rev3l REV3 like, DNA directed polymerase zeta catalytic subunit enables IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr20:43,131,841...43,290,102
Ensembl chr20:43,132,363...43,290,099
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  molecular_function 20487
    catalytic activity 6037
      catalytic activity, acting on a nucleic acid 630
        catalytic activity, acting on DNA 254
          DNA polymerase activity 34
            DNA-directed DNA polymerase activity 21
Path 2
Term Annotations click to browse term
  molecular_function 20487
    catalytic activity 6037
      transferase activity 2398
        transferase activity, transferring phosphorus-containing groups 972
          nucleotidyltransferase activity 143
            DNA polymerase activity 34
              DNA-directed DNA polymerase activity 21
paths to the root