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ONTOLOGY REPORT - ANNOTATIONS

Term:DNA-templated transcription elongation
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Accession:GO:0006354 term browser browse the term
Definition:The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase.
Synonyms:exact_synonym: DNA-dependent transcription, elongation;   transcriptional elongation, DNA-dependent
 narrow_synonym: RNA elongation from bacterial-type RNA polymerase promoter;   transcription elongation from bacterial-type RNA polymerase promoter
 broad_synonym: RNA elongation
 alt_id: GO:0001124


show annotations for term's descendants           Sort by:
DNA-templated transcription elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ell3 elongation factor for RNA polymerase II 3 involved_in ISO (PMID:10882741) RGD PMID:10882741 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
maintenance of transcriptional fidelity during transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Polr2i RNA polymerase II subunit I involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:85,483,515...85,484,952
Ensembl chr 1:85,483,515...85,484,952 		JBrowse link
negative regulation of DNA-templated transcription, elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929), (PMID:9857195) RGD PMID:9450929 PMID:9857195 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:10075709), (PMID:9450929) RGD PMID:9450929 PMID:10075709 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Wdr82 WD repeat domain 82 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 8:106,814,569...106,834,535
Ensembl chr 8:106,814,569...106,834,438 		JBrowse link
G Zc3h4 zinc finger CCCH-type containing 4 involved_in ISO (PMID:33913806)
(MGI:6867107|PMID:33767452)		 RGD PMID:33767452 PMID:33913806 MGI:6867107 NCBI chr 1:77,106,309...77,143,827
Ensembl chr 1:77,106,250...77,142,691 		JBrowse link
negative regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:10318824), (PMID:19204372)		 Ensembl
RGD		 PMID:10318824 PMID:19204372 GO_REF:0000107 NCBI chr10:15,163,477...15,215,615
Ensembl chr10:15,163,684...15,215,615 		JBrowse link
G Eapp E2F-associated phosphoprotein acts_upstream_of_or_within ISO (PMID:15716352) RGD PMID:15716352 NCBI chr 6:72,166,486...72,194,357
Ensembl chr 6:72,170,301...72,193,734 		JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit acts_upstream_of_or_within ISO MGI:2661097 (PMID:19303854) RGD PMID:19303854 NCBI chr 4:76,624,399...76,687,362
Ensembl chr 4:76,624,399...76,687,362 		JBrowse link
G Hexim1 HEXIM P-TEFb complex subunit 1 involved_in ISO
ISS		 (PMID:14580347)
GO_REF:0000024		 RGD
UniProt		 PMID:14580347 GO_REF:0000024 NCBI chr10:88,062,808...88,064,920
Ensembl chr10:88,062,803...88,066,189 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in IEA
ISO		 GO_REF:0000107
(PMID:10490622)		 Ensembl
RGD		 PMID:10490622 GO_REF:0000107 NCBI chr13:90,069,058...90,086,905
Ensembl chr13:90,074,181...90,086,588 		JBrowse link
G Nelfa negative elongation factor complex member A involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:12612062)
(PMID:21670248)
GO_REF:0000033		 RGD
GO_Central		 PMID:12612062 PMID:21670248 GO_REF:0000033 NCBI chr14:76,808,920...76,832,998
Ensembl chr14:76,808,870...76,832,994 		JBrowse link
G Nelfb negative elongation factor complex member B involved_in ISO
IBA		 (MGI:3845453|PMID:19340312), (MGI:5576446|PMID:24656816), (MGI:6270977|PMID:25773599)
GO_REF:0000033
(PMID:12612062)		 RGD
GO_Central		 PMID:12612062 PMID:19340312 PMID:24656816 PMID:25773599 GO_REF:0000033 MGI:3845453 MGI:5576446 MGI:6270977 NCBI chr 3:8,010,883...8,027,403
Ensembl chr 3:8,010,888...8,027,403 		JBrowse link
G Nelfcd negative elongation factor complex member C/D involved_in ISO
IBA		 (PMID:12612062)
GO_REF:0000033		 RGD
GO_Central		 PMID:12612062 GO_REF:0000033 NCBI chr 3:163,213,765...163,224,886
Ensembl chr 3:163,213,762...163,224,884 		JBrowse link
G Nelfe negative elongation factor complex member E involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:12612062), (PMID:14701750), (PMID:27256882)
(PMID:21670248)
(PMID:31399344)
GO_REF:0000033		 RGD
GO_Central		 PMID:12612062 PMID:14701750 PMID:21670248 PMID:27256882 PMID:31399344 GO_REF:0000033 NCBI chr20:3,976,512...3,982,389
Ensembl chr20:3,976,518...3,982,355 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO (PMID:35393539) RGD PMID:35393539 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Recql5 RecQ like helicase 5 involved_in ISO
ISS		 (PMID:23748380)
GO_REF:0000024		 RGD
UniProt		 PMID:23748380 GO_REF:0000024 NCBI chr10:101,126,544...101,165,739
Ensembl chr10:101,126,547...101,165,652 		JBrowse link
G Rnf168 ring finger protein 168 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20550933)		 UniProt
Ensembl
RGD		 PMID:20550933 GO_REF:0000024 GO_REF:0000107 NCBI chr11:68,486,313...68,508,296
Ensembl chr11:68,486,321...68,508,277 		JBrowse link
G Rnf8 ring finger protein 8 involved_in ISO
ISS		 (PMID:20550933)
GO_REF:0000024		 RGD
UniProt		 PMID:20550933 GO_REF:0000024 NCBI chr20:7,682,258...7,710,448
Ensembl chr20:7,682,322...7,708,491 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
(PMID:17284610)		 Ensembl
RGD		 PMID:17284610 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Sirt6 sirtuin 6 involved_in ISO (MGI:6214653|PMID:25247314), (PMID:31399344) RGD PMID:25247314 PMID:31399344 MGI:6214653 NCBI chr 7:8,082,312...8,087,776
Ensembl chr 7:8,082,364...8,098,914 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit acts_upstream_of_or_within ISO (PMID:21670248) RGD PMID:21670248 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor involved_in ISO (PMID:7660122) RGD PMID:7660122 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377 		JBrowse link
positive regulation of DNA-templated transcription, elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccnk cyclin K involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191 		JBrowse link
G Ccnt1 cyclin T1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:129,687,146...129,718,080
Ensembl chr 7:129,691,209...129,717,871 		JBrowse link
G Ccnt2 cyclin T2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in ISO
IEA		 (PMID:10882741)
GO_REF:0000107		 RGD
Ensembl		 PMID:10882741 GO_REF:0000107 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:9326587) RGD PMID:9326587 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Kat7 lysine acetyltransferase 7 involved_in ISS
ISO		 GO_REF:0000024
(MGI:6392952|PMID:31827282)		 UniProt
RGD		 PMID:31827282 GO_REF:0000024 MGI:6392952 NCBI chr10:80,221,519...80,255,590
Ensembl chr10:80,221,524...80,255,567 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 involved_in ISO (PMID:27256882) RGD PMID:27256882 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Scaf8 SR-related CTD-associated factor 8 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:31104839)		 UniProt
Ensembl
RGD		 PMID:31104839 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:43,727,686...43,855,889
Ensembl chr 1:43,727,794...43,804,977 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) RGD PMID:9450929 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) RGD PMID:9450929 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
positive regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brd4 bromodomain containing 4 acts_upstream_of_or_within
involved_in		 ISO (PMID:18039861)
(PMID:19103749)		 RGD PMID:18039861 PMID:19103749 NCBI chr 7:11,216,446...11,296,029
Ensembl chr 7:11,216,446...11,295,539 		JBrowse link
G Btbd18 BTB domain containing 18 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:69,743,057...69,751,096
Ensembl chr 3:69,745,012...69,751,042 		JBrowse link
G Cbx7 chromobox 7 IMP RGD PMID:19706751 RGD:9586729 NCBI chr 7:111,460,656...111,479,231
Ensembl chr 7:111,460,656...111,477,973 		JBrowse link
G Ccnk cyclin K involved_in ISO (PMID:22988298), (PMID:26748711) RGD PMID:22988298 PMID:26748711 NCBI chr 6:127,090,115...127,113,195
Ensembl chr 6:127,090,569...127,113,191 		JBrowse link
G Ccnt1 cyclin T1 involved_in ISO (PMID:30134174), (PMID:35393539), (PMID:9499409) RGD PMID:9499409 PMID:30134174 PMID:35393539 NCBI chr 7:129,687,146...129,718,080
Ensembl chr 7:129,691,209...129,717,871 		JBrowse link
G Ccnt2 cyclin T2 involved_in ISO (PMID:9499409) RGD PMID:9499409 NCBI chr13:39,251,573...39,293,172
Ensembl chr13:39,251,573...39,292,019 		JBrowse link
G Cdc73 cell division cycle 73 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Cdk12 cyclin-dependent kinase 12 involved_in ISO
IBA
IEA		 (PMID:22988298)
GO_REF:0000033
GO_REF:0000107		 RGD
GO_Central
Ensembl		 PMID:22988298 GO_REF:0000033 GO_REF:0000107 NCBI chr10:83,201,177...83,256,906
Ensembl chr10:83,201,211...83,280,888
Ensembl chr10:83,201,211...83,280,888 		JBrowse link
G Cdk13 cyclin-dependent kinase 13 involved_in ISO
IBA		 (PMID:26748711)
GO_REF:0000033		 RGD
GO_Central		 PMID:26748711 GO_REF:0000033 NCBI chr17:47,251,145...47,344,675
Ensembl chr17:47,251,163...47,341,721 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in ISS
ISO
IEA		 GO_REF:0000024
(PMID:14701750), (PMID:30134174), (PMID:9499409)
GO_REF:0000107		 UniProt
RGD
Ensembl		 PMID:9499409 PMID:14701750 PMID:30134174 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G Ctnnb1 catenin beta 1 involved_in IEA
ISO		 GO_REF:0000107
MGI:2148567|MGI:3841145 (PMID:30478225)		 Ensembl
RGD		 PMID:30478225 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Dab2 DAB adaptor protein 2 involved_in ISO (MGI:5442512|PMID:15894542) RGD PMID:15894542 MGI:5442512 NCBI chr 2:55,514,692...55,567,476
Ensembl chr 2:55,514,700...55,567,476 		JBrowse link
G Eapp E2F-associated phosphoprotein acts_upstream_of_or_within ISO (PMID:15716352) RGD PMID:15716352 NCBI chr 6:72,166,486...72,194,357
Ensembl chr 6:72,170,301...72,193,734 		JBrowse link
G Ell elongation factor for RNA polymerase II involved_in ISO
IBA		 (PMID:23932780)
GO_REF:0000033		 RGD
GO_Central		 PMID:23932780 GO_REF:0000033 NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118 		JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781 		JBrowse link
G Ell2l1 elongation factor for RNA polymerase II 2 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:145,878,600...145,888,249
Ensembl chr  X:145,878,614...145,887,896 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
G Eloc elongin C IDA RGD PMID:8202474 RGD:730008 NCBI chr 5:2,661,527...2,677,893
Ensembl chr 5:2,661,724...2,677,890 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (PMID:21245044) RGD PMID:21245044 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Ldb1 LIM domain binding 1 involved_in ISO (MGI:4834059|PMID:20570862) RGD PMID:20570862 MGI:4834059 NCBI chr 1:244,864,168...244,890,007
Ensembl chr 1:244,877,173...244,890,013 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 IMP RGD PMID:18086894 RGD:2292639 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Pwwp2a PWWP domain containing 2A involved_in ISO (MGI:6709552|PMID:30228260) RGD PMID:30228260 MGI:6709552 NCBI chr10:28,155,509...28,195,255
Ensembl chr10:28,155,605...28,194,308 		JBrowse link
G Pwwp2b PWWP domain containing 2B involved_in ISO (MGI:6709552|PMID:30228260) RGD PMID:30228260 MGI:6709552 NCBI chr 1:194,040,395...194,059,979
Ensembl chr 1:194,041,341...194,059,958 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (PMID:17234882)
(MGI:5508611|PMID:17234882)		 RGD PMID:17234882 MGI:5508611 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780 		JBrowse link
G Zmynd8 zinc finger, MYND-type containing 8 involved_in ISO UniProtKB:P50750 (PMID:26655721), (PMID:30134174) RGD PMID:26655721 PMID:30134174 NCBI chr 3:154,528,917...154,629,532
Ensembl chr 3:154,529,043...154,628,463 		JBrowse link
regulation of DNA-templated transcription elongation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccar2 cell cycle and apoptosis regulator 2 involved_in ISO (PMID:22446626) RGD PMID:22446626 NCBI chr15:45,212,797...45,228,001
Ensembl chr15:45,212,803...45,227,636 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor involved_in ISO (PMID:9326587) RGD PMID:9326587 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Setd5 SET domain containing 5 involved_in ISO (MGI:6381850|PMID:31515109) RGD PMID:31515109 MGI:6381850 NCBI chr 4:146,217,172...146,294,896
Ensembl chr 4:146,217,180...146,294,894 		JBrowse link
G Zfp326 zinc finger protein 326 involved_in ISO
IBA		 (PMID:22446626)
GO_REF:0000033		 RGD
GO_Central		 PMID:22446626 GO_REF:0000033 NCBI chr14:3,941,210...3,980,419
Ensembl chr14:3,941,958...3,980,384 		JBrowse link
regulation of transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eaf1 ELL associated factor 1 involved_in ISO (PMID:32087315) RGD PMID:32087315 NCBI chr16:6,698,322...6,713,071
Ensembl chr16:6,698,322...6,713,071 		JBrowse link
G Eaf2 ELL associated factor 2 involved_in ISO (PMID:32087315) RGD PMID:32087315 NCBI chr11:63,960,200...64,004,610
Ensembl chr11:63,960,200...64,004,610 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor IMP RGD PMID:31644904 RGD:126925983 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) RGD PMID:9450929 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO (PMID:9450929) RGD PMID:9450929 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Wdr43 WD repeat domain 43 involved_in ISO (MGI:6323527|PMID:31128943) RGD PMID:31128943 MGI:6323527 NCBI chr 6:23,845,499...23,884,846
Ensembl chr 6:23,845,499...23,884,846 		JBrowse link
G Zmynd11 zinc finger, MYND-type containing 11 involved_in ISO
IBA		 (MGI:5560379|PMID:24590075)
GO_REF:0000033		 RGD
GO_Central		 PMID:24590075 GO_REF:0000033 MGI:5560379 NCBI chr17:60,542,669...60,631,913
Ensembl chr17:60,543,077...60,631,902 		JBrowse link
transcription elongation by mitochondrial RNA polymerase term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tefm transcription elongation factor, mitochondrial involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:65,119,657...65,124,233
Ensembl chr10:65,119,659...65,124,486 		JBrowse link
transcription elongation by RNA polymerase I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ercc2 ERCC excision repair 2, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO MGI:2183949 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:79,033,342...79,047,102
Ensembl chr 1:79,033,326...79,047,102 		JBrowse link
G Ercc3 ERCC excision repair 3, TFIIH core complex helicase subunit acts_upstream_of_or_within ISO (PMID:23562818) RGD PMID:23562818 NCBI chr18:23,883,613...23,914,326
Ensembl chr18:23,883,580...23,914,329 		JBrowse link
G Ercc6 ERCC excision repair 6, chromatin remodeling factor acts_upstream_of_or_within ISO MGI:1932102 (PMID:23562818) RGD PMID:23562818 NCBI chr16:7,764,983...7,835,587
Ensembl chr16:7,765,013...7,835,587 		JBrowse link
G Gtf2h5 general transcription factor IIH subunit 5 acts_upstream_of_or_within ISO MGI:5514340 (PMID:23562818) RGD PMID:23562818 NCBI chr 1:46,656,804...46,663,512
Ensembl chr 1:46,656,859...46,664,939 		JBrowse link
G Polr1e RNA polymerase I subunit E involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369 		JBrowse link
G Polr1f RNA polymerase I subunit F involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:50,053,289...50,070,514
Ensembl chr 6:50,053,289...50,070,514 		JBrowse link
G Polr2e RNA polymerase II, I and III subunit E involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:9,666,695...9,670,638
Ensembl chr 7:9,666,716...9,670,643 		JBrowse link
G Ubtf upstream binding transcription factor acts_upstream_of_or_within ISO (PMID:23562818) RGD PMID:23562818 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
transcription elongation by RNA polymerase II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07002622.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:76,426,358...76,427,521 JBrowse link
G AABR07043557.1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr19:22,481,952...22,483,036 JBrowse link
G AC119015.3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr10:73,743,526...73,743,822 JBrowse link
G Adrm1 ADRM1 26S proteasome ubiquitin receptor involved_in ISO
IEA		 (PMID:11818576)
GO_REF:0000107		 RGD
Ensembl		 PMID:11818576 GO_REF:0000107 NCBI chr 3:167,265,435...167,270,197
Ensembl chr 3:167,265,296...167,270,195 		JBrowse link
G Cdc73 cell division cycle 73 involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20178742)		 UniProt
Ensembl
RGD		 PMID:20178742 GO_REF:0000024 GO_REF:0000107 NCBI chr13:55,357,226...55,449,690
Ensembl chr13:55,357,226...55,449,656 		JBrowse link
G Cdk9 cyclin-dependent kinase 9 involved_in ISO (PMID:14580347) RGD PMID:14580347 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G Ctr9 CTR9 homolog, Paf1/RNA polymerase II complex component involved_in ISO
IBA		 (PMID:20178742)
GO_REF:0000033		 RGD
GO_Central		 PMID:20178742 GO_REF:0000033 NCBI chr 1:165,137,277...165,167,303
Ensembl chr 1:165,137,215...165,167,303 		JBrowse link
G Eaf1 ELL associated factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:6,698,322...6,713,071
Ensembl chr16:6,698,322...6,713,071 		JBrowse link
G Eaf2 ELL associated factor 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr11:63,960,200...64,004,610
Ensembl chr11:63,960,200...64,004,610 		JBrowse link
G Ell elongation factor for RNA polymerase II involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr16:18,843,775...18,891,484
Ensembl chr16:18,843,780...18,891,118 		JBrowse link
G Ell2 elongation factor for RNA polymerase II 2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:5,189,375...5,258,781
Ensembl chr 2:5,189,971...5,258,781 		JBrowse link
G Ell2l1 elongation factor for RNA polymerase II 2 like 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:145,878,600...145,888,249
Ensembl chr  X:145,878,614...145,887,896 		JBrowse link
G Ell3 elongation factor for RNA polymerase II 3 involved_in ISO
IEA		 (PMID:10882741)
GO_REF:0000107
GO_REF:0000002		 RGD
Ensembl
InterPro		 PMID:10882741 GO_REF:0000002 GO_REF:0000107 NCBI chr 3:108,413,035...108,417,181
Ensembl chr 3:108,410,448...108,417,132 		JBrowse link
G Eloa elongin A involved_in IDA
IEA		 PMID:8896449
GO_REF:0000002		 InterPro PMID:8896449 GO_REF:0000002, RGD:8553414 NCBI chr 5:148,231,600...148,246,760
Ensembl chr 5:148,231,596...148,246,765 		JBrowse link
G Elob elongin B involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:12,848,830...12,853,897
Ensembl chr10:12,848,827...12,853,635 		JBrowse link
G Elob-ps13 elongin B, pseduogene 13 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:21,021,825...21,022,305
Ensembl chr 3:21,021,861...21,022,169
Ensembl chr 3:21,021,861...21,022,169 		JBrowse link
G Elob-ps4 elongin B, pseduogene 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:73,749,869...73,750,223
Ensembl chr10:73,747,952...73,750,403 		JBrowse link
G Elobl7 elongin B like 7 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:110,995,164...110,995,624
Ensembl chr 8:110,989,940...110,995,640 		JBrowse link
G Elobl9 elongin B like 9 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:73,765,641...73,765,970
Ensembl chr10:73,765,617...73,765,970 		JBrowse link
G Elof1 elongation factor 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:20,645,336...20,650,888
Ensembl chr 8:20,645,336...20,650,579 		JBrowse link
G ENSRNOG00000063973 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr  X:115,936,708...115,937,864 JBrowse link
G ENSRNOG00000064158 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,002,979...21,003,786 JBrowse link
G ENSRNOG00000065620 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,006,946...21,007,741 JBrowse link
G ENSRNOG00000066103 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,025,824...21,026,620 JBrowse link
G ENSRNOG00000066836 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 8:3,228,866...3,234,903 JBrowse link
G ENSRNOG00000068416 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,017,907...21,018,712 JBrowse link
G ENSRNOG00000068577 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:20,998,987...20,999,319 JBrowse link
G ENSRNOG00000069411 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:21,029,748...21,030,080 JBrowse link
G ENSRNOG00000069831 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 3:20,991,066...20,991,398 JBrowse link
G ENSRNOG00000070656 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 6:76,070,756...76,077,309 JBrowse link
G ENSRNOG00000071067 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:126,816,739...126,817,049 JBrowse link
G Eny2 ENY2, transcription and export complex 2 subunit involved_in IEA GO_REF:0000104 UniProt GO_REF:0000104 NCBI chr 7:75,581,215...75,605,903
Ensembl chr 7:75,581,240...75,605,897 		JBrowse link
G Gtf2f1 general transcription factor IIF subunit 1 involved_in ISO (PMID:15351637) RGD PMID:15351637 NCBI chr 9:1,844,027...1,853,455
Ensembl chr 9:1,843,901...1,853,423 		JBrowse link
G Gtf2f2 general transcription factor IIF subunit 2 involved_in IDA
ISO		 (PMID:15351637) RGD PMID:15351637 PMID:7929273 RGD:9681417 NCBI chr15:51,206,027...51,327,166
Ensembl chr15:51,206,031...51,327,253 		JBrowse link
G Leo1 LEO1 homolog, Paf1/RNA polymerase II complex component involved_in ISO
ISS		 (PMID:20178742)
GO_REF:0000024		 RGD
UniProt		 PMID:20178742 GO_REF:0000024 NCBI chr 8:76,199,547...76,223,983
Ensembl chr 8:76,199,099...76,223,983 		JBrowse link
G LOC120098580 DNA-directed RNA polymerase II subunit GRINL1A-like involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr19:22,878,910...22,880,774
Ensembl chr19:22,879,469...22,880,556 		JBrowse link
G Myzap myocardial zonula adherens protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:72,155,817...72,243,036
Ensembl chr 8:72,131,530...72,243,036 		JBrowse link
G Paf1 PAF1 homolog, Paf1/RNA polymerase II complex component involved_in ISO
ISS		 (PMID:20178742)
GO_REF:0000024		 RGD
UniProt		 PMID:20178742 GO_REF:0000024 NCBI chr 1:83,683,654...83,689,233
Ensembl chr 1:83,668,813...83,689,237 		JBrowse link
G Pbrm1 polybromo 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:6,213,507...6,312,895
Ensembl chr16:6,213,300...6,311,780 		JBrowse link
G Pcid2 PCI domain containing 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712 		JBrowse link
G Polr2m RNA polymerase II subunit M involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 8:72,131,992...72,139,423
Ensembl chr 8:72,131,530...72,243,036 		JBrowse link
G Rtf1 Rtf1, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae) involved_in ISO (PMID:20178742) RGD PMID:20178742 NCBI chr 3:106,659,363...106,718,956
Ensembl chr 3:106,659,308...106,718,970 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase involved_in ISO (PMID:23325844) RGD PMID:23325844 NCBI chr 8:110,511,808...110,597,475
Ensembl chr 8:110,511,772...110,597,489 		JBrowse link
G Skic8 SKI8 subunit of superkiller complex involved_in ISS
IEA
ISO		 GO_REF:0000024
GO_REF:0000107
(PMID:20178742)		 UniProt
Ensembl
RGD		 PMID:20178742 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:55,103,542...55,120,837
Ensembl chr 8:55,103,545...55,120,813 		JBrowse link
G Sox10 SRY-box transcription factor 10 IDA RGD PMID:25524031 RGD:12879827 NCBI chr 7:110,725,274...110,734,651
Ensembl chr 7:110,725,274...110,735,544 		JBrowse link
G Supt16h SPT16 homolog, facilitates chromatin remodeling subunit involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:24,867,697...24,904,818
Ensembl chr15:24,866,489...24,904,846 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in ISO
IBA		 (PMID:9450929), (PMID:9857195)
GO_REF:0000033		 RGD
GO_Central		 PMID:9450929 PMID:9857195 GO_REF:0000033 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in ISO
IBA		 (PMID:10075709), (PMID:9450929)
GO_REF:0000033		 RGD
GO_Central		 PMID:9450929 PMID:10075709 GO_REF:0000033 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780 		JBrowse link
G Tcea1 transcription elongation factor A1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:14,631,454...14,668,769
Ensembl chr 5:14,631,454...14,668,745
Ensembl chr15:14,631,454...14,668,745 		JBrowse link
G Tcea2 transcription elongation factor A2 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 3:168,796,244...168,804,125
Ensembl chr 3:168,796,331...168,804,116 		JBrowse link
G Tcea3 transcription elongation factor A3 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 5:148,476,941...148,509,452
Ensembl chr 5:148,476,941...148,509,448 		JBrowse link
transcription elongation-coupled chromatin remodeling term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk9 cyclin-dependent kinase 9 involved_in ISO
IEA		 (PMID:19844166)
GO_REF:0000107		 RGD
Ensembl		 PMID:19844166 GO_REF:0000107 NCBI chr 3:15,996,467...16,001,315
Ensembl chr 3:15,996,468...16,002,410 		JBrowse link
G ENSRNOG00000068353 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 1:258,030,937...258,037,823 JBrowse link
G ENSRNOG00000069559 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 Ensembl chr 4:64,095,041...64,095,714 JBrowse link
G Epop elongin BC and polycomb repressive complex 2 associated protein involved_in ISO (MGI:5822935|PMID:27863226) RGD PMID:27863226 MGI:5822935 NCBI chr10:82,624,392...82,625,912
Ensembl chr10:82,624,392...82,625,912 		JBrowse link
G Glyr1 glyoxylate reductase 1 homolog involved_in ISO
IEA
IBA		 (PMID:29759984)
GO_REF:0000107
GO_REF:0000033		 RGD
Ensembl
GO_Central		 PMID:29759984 GO_REF:0000033 GO_REF:0000107 NCBI chr10:10,532,036...10,567,639
Ensembl chr10:10,532,154...10,567,637 		JBrowse link
G Iws1 interacts with SUPT6H, CTD assembly factor 1 involved_in ISO
IEA		 (PMID:19141475)
GO_REF:0000107		 RGD
Ensembl		 PMID:19141475 GO_REF:0000107 NCBI chr18:23,695,496...23,737,363
Ensembl chr18:23,695,425...23,736,172 		JBrowse link
G Sart3 spliceosome associated factor 3, U4/U6 recycling protein involved_in ISO (PMID:24526689) RGD PMID:24526689 NCBI chr12:42,859,026...42,887,041
Ensembl chr12:42,859,305...42,887,038 		JBrowse link
G Supt4h1 SPT4 homolog, DSIF elongation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr10:72,539,323...72,545,582
Ensembl chr10:72,539,382...72,545,831 		JBrowse link
G Supt5h SPT5 homolog, DSIF elongation factor subunit involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 1:83,586,713...83,616,971
Ensembl chr 1:83,586,718...83,616,892 		JBrowse link
G Supt6h SPT6 homolog, histone chaperone and transcription elongation factor involved_in ISO (PMID:23503590)
(MGI:5484727|PMID:23503590)		 RGD PMID:23503590 MGI:5484727 NCBI chr10:63,103,920...63,140,780
Ensembl chr10:63,103,921...63,140,780 		JBrowse link
G Usp15 ubiquitin specific peptidase 15 involved_in ISO
ISS
IEA		 (PMID:24526689)
GO_REF:0000024
GO_REF:0000107		 RGD
UniProt
Ensembl		 PMID:24526689 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:58,756,714...58,848,778
Ensembl chr 7:58,756,872...58,848,721 		JBrowse link
G Usp7 ubiquitin specific peptidase 7 involved_in ISO (MGI:5822935|PMID:27863226) RGD PMID:27863226 MGI:5822935 NCBI chr10:6,880,684...6,925,355
Ensembl chr10:6,828,795...6,925,355 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    cellular process 18196
      cellular metabolic process 9552
        cellular biosynthetic process 7753
          macromolecule biosynthetic process 7211
            RNA biosynthetic process 3305
              DNA-templated transcription elongation 112
                maintenance of transcriptional fidelity during transcription elongation + 1
                negative regulation of DNA-templated transcription, elongation + 20
                positive regulation of DNA-templated transcription, elongation + 33
                regulation of DNA-templated transcription elongation + 56
                transcription elongation by RNA polymerase I + 8
                transcription elongation by RNA polymerase II + 97
                transcription elongation by RNA polymerase III + 0
                transcription elongation by mitochondrial RNA polymerase 1
Path 2
Term Annotations click to browse term
  biological_process 19692
    metabolic process 11448
      organic substance metabolic process 10963
        organic cyclic compound metabolic process 6032
          nucleobase-containing compound metabolic process 5530
            nucleic acid metabolic process 4955
              nucleic acid biosynthetic process 3434
                RNA biosynthetic process 3305
                  DNA-templated transcription 3282
                    DNA-templated transcription elongation 112
                      maintenance of transcriptional fidelity during transcription elongation + 1
                      negative regulation of DNA-templated transcription, elongation + 20
                      positive regulation of DNA-templated transcription, elongation + 33
                      regulation of DNA-templated transcription elongation + 56
                      transcription elongation by RNA polymerase I + 8
                      transcription elongation by RNA polymerase II + 97
                      transcription elongation by RNA polymerase III + 0
                      transcription elongation by mitochondrial RNA polymerase 1
paths to the root