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ONTOLOGY REPORT - ANNOTATIONS

Term:cytidine metabolic process
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Accession:GO:0046087 term browser browse the term
Definition:The chemical reactions and pathways involving cytidine, cytosine riboside, a widely distributed nucleoside.
Synonyms:exact_synonym: cytidine metabolism

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cytidine metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G R Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IC PMID:10781591 UniProt PMID:10781591 RGD:8553657 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G N Aicda activation induced cytidine deaminase involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624860:4,912,938...4,927,846
Ensembl chrNW_004624860:4,912,656...4,926,634 		JBrowse link
G G AICDA activation induced cytidine deaminase involved_in IEA GOC GO_REF:0000108 NCBI chr11:8,426,920...8,438,331
Ensembl chr11:8,428,922...8,431,641 		JBrowse link
G P AICDA activation induced cytidine deaminase involved_in IEA Ensembl
GOC		 GO_REF:0000107 GO_REF:0000108 NCBI chr 5:62,777,236...62,787,342
Ensembl chr 5:62,777,352...62,787,369 		JBrowse link
G S Aicda activation induced cytidine deaminase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936870:25,039...34,601
Ensembl chrNW_004936870:25,039...34,601 		JBrowse link
G D AICDA activation induced cytidine deaminase involved_in ISS
IEA		 UniProt
GOC
Ensembl		 GO_REF:0000024 GO_REF:0000107 GO_REF:0000108 NCBI chr27:37,064,107...37,073,791
Ensembl chr27:37,064,080...37,073,789 		JBrowse link
G B AICDA activation induced cytidine deaminase involved_in IEA GOC GO_REF:0000108 NCBI chr12:8,688,392...8,699,008
Ensembl chr12:8,904,273...8,913,917 		JBrowse link
G R Aicda activation-induced cytidine deaminase involved_in ISO (MGI:2656023|PMID:12692563) RGD PMID:12692563 MGI:2656023 NCBI chr 4:155,774,132...155,783,972
Ensembl chr 4:155,774,132...155,783,972 		JBrowse link
G M Aicda activation-induced cytidine deaminase involved_in IMP (MGI:2656023|PMID:12692563) UniProt PMID:12692563 MGI:2656023 NCBI chr 6:122,530,768...122,541,139
Ensembl chr 6:122,530,760...122,541,139 		JBrowse link
G H AICDA activation induced cytidine deaminase involved_in IEA Ensembl
GOC		 GO_REF:0000107 GO_REF:0000108 NCBI chr12:8,602,170...8,612,859
Ensembl chr12:8,602,155...8,613,242 		JBrowse link
G N Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624860:4,938,001...4,957,640
Ensembl chrNW_004624860:4,938,001...4,957,236 		JBrowse link
G G APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GOC GO_REF:0000108 NCBI chr11:7,696,571...7,700,424
Ensembl chr11:7,696,259...7,700,643 		JBrowse link
G P APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GOC GO_REF:0000108 NCBI chr 5:62,811,819...62,820,532
Ensembl chr 5:62,810,879...62,820,173 		JBrowse link
G S Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004939393:628...6,234
Ensembl chrNW_004939393:628...6,201 		JBrowse link
G D APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GOC GO_REF:0000108 NCBI chr27:37,102,728...37,114,084
Ensembl chr27:37,103,016...37,114,556 		JBrowse link
G B APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GOC GO_REF:0000108 NCBI chr12:7,777,734...7,793,960
Ensembl chr12:7,939,262...7,944,203 		JBrowse link
G R Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 4:155,800,030...155,828,515
Ensembl chr 4:155,800,887...155,827,390 		JBrowse link
G H APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 involved_in IEA GOC GO_REF:0000108 NCBI chr12:7,649,400...7,670,599
Ensembl chr12:7,649,400...7,665,908 		JBrowse link
G N Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004624754:17,689,587...17,700,318
Ensembl chrNW_004624754:17,689,595...17,700,316 		JBrowse link
G G APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chr17:31,091,668...31,104,534
Ensembl chr17:31,095,184...31,103,526 		JBrowse link
G P APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 7:36,364,258...36,381,012
Ensembl chr 7:36,364,300...36,384,295 		JBrowse link
G S Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chrNW_004936476:18,759,040...18,769,815
Ensembl chrNW_004936476:18,758,582...18,769,835 		JBrowse link
G D APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chr12:9,808,276...9,819,973
Ensembl chr12:9,808,297...9,819,985 		JBrowse link
G B APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:40,641,211...40,652,975
Ensembl chr 6:41,950,194...41,963,086 		JBrowse link
G R Apobec2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 9:12,564,955...12,578,461
Ensembl chr 9:12,564,920...12,578,458 		JBrowse link
G H APOBEC2 apolipoprotein B mRNA editing enzyme catalytic subunit 2 involved_in IEA GOC GO_REF:0000108 NCBI chr 6:41,053,202...41,064,891
Ensembl chr 6:41,053,202...41,064,891 		JBrowse link
G R Apobec3 apolipoprotein B mRNA editing enzyme catalytic subunit 3 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:111,433,789...111,453,032
Ensembl chr 7:111,433,764...111,452,922 		JBrowse link
G B APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A involved_in IEA GOC GO_REF:0000108 NCBI chr22:19,866,522...19,872,836 JBrowse link
G H APOBEC3A apolipoprotein B mRNA editing enzyme catalytic subunit 3A involved_in IEA GOC GO_REF:0000108 NCBI chr22:38,957,609...38,963,184
Ensembl chr22:38,952,741...38,963,184 		JBrowse link
G H APOBEC3A_B APOBEC3A and APOBEC3B deletion hybrid involved_in IEA GOC GO_REF:0000108 Ensembl chr22:38,952,741...38,963,184 JBrowse link
G G APOBEC3B apolipoprotein B mRNA editing enzyme catalytic subunit 3B involved_in IEA GOC GO_REF:0000108 Ensembl chr19:21,625,056...21,635,889 JBrowse link
G P APOBEC3B apolipoprotein B mRNA editing enzyme catalytic subunit 3B involved_in IEA GOC GO_REF:0000108 NCBI chr 5:9,098,676...9,115,965
Ensembl chr 5:9,097,719...9,116,369 		JBrowse link
G B APOBEC3B apolipoprotein B mRNA editing enzyme catalytic subunit 3B involved_in IEA GOC GO_REF:0000108 NCBI chr22:19,892,548...19,902,455
Ensembl chr22:37,711,588...37,721,265 		JBrowse link
G H APOBEC3B apolipoprotein B mRNA editing enzyme catalytic subunit 3B involved_in IEA GOC GO_REF:0000108 NCBI chr22:38,982,347...38,992,779
Ensembl chr22:38,982,347...38,992,804 		JBrowse link
G G APOBEC3C apolipoprotein B mRNA editing enzyme catalytic subunit 3C involved_in IEA GOC GO_REF:0000108 NCBI chr19:21,657,588...21,662,061
Ensembl chr19:21,657,702...21,661,643 		JBrowse link
G B APOBEC3C apolipoprotein B mRNA editing enzyme catalytic subunit 3C involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:19,924,116...19,930,771
Ensembl chr22:37,743,388...37,749,725 		JBrowse link
G H APOBEC3C apolipoprotein B mRNA editing enzyme catalytic subunit 3C involved_in IDA
IEA		 (PMID:21632763) UniProt
GOC		 PMID:21632763 GO_REF:0000108 NCBI chr22:39,014,257...39,020,352
Ensembl chr22:39,014,257...39,020,352 		JBrowse link
G G APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D involved_in IEA GOC GO_REF:0000108 NCBI chr19:21,606,278...21,695,429
Ensembl chr19:21,665,117...21,698,449 		JBrowse link
G B APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D involved_in IEA GOC GO_REF:0000108 NCBI chr22:19,931,452...19,942,829 JBrowse link
G H APOBEC3D apolipoprotein B mRNA editing enzyme catalytic subunit 3D involved_in IEA GOC GO_REF:0000108 NCBI chr22:39,021,127...39,033,277
Ensembl chr22:39,021,113...39,033,277 		JBrowse link
G H APOBEC3F apolipoprotein B mRNA editing enzyme catalytic subunit 3F involved_in IEA GOC GO_REF:0000108 NCBI chr22:39,040,864...39,055,972
Ensembl chr22:39,040,604...39,055,972 		JBrowse link
G G APOBEC3G apolipoprotein B mRNA editing enzyme catalytic subunit 3G involved_in IEA UniProt
Ensembl		 GO_REF:0000104 GO_REF:0000107 NCBI chr19:21,717,867...21,732,276
Ensembl chr19:21,717,889...21,732,839 		JBrowse link
G B APOBEC3G apolipoprotein B mRNA editing enzyme catalytic subunit 3G involved_in ISS UniProt GO_REF:0000024 NCBI chr22:19,977,184...19,994,769 JBrowse link
G H APOBEC3G apolipoprotein B mRNA editing enzyme catalytic subunit 3G involved_in IEA
IDA		 (PMID:16378963) UniProt PMID:16378963 GO_REF:0000104 NCBI chr22:39,077,005...39,087,743
Ensembl chr22:39,077,067...39,087,743 		JBrowse link
G G APOBEC3H apolipoprotein B mRNA editing enzyme catalytic subunit 3H involved_in IEA GOC GO_REF:0000108 NCBI chr19:21,734,362...21,749,148
Ensembl chr19:21,742,084...21,749,288 		JBrowse link
G B APOBEC3H apolipoprotein B mRNA editing enzyme catalytic subunit 3H involved_in IEA GOC GO_REF:0000108 NCBI chr22:20,003,585...20,010,741
Ensembl chr22:37,821,315...37,828,153 		JBrowse link
G H APOBEC3H apolipoprotein B mRNA editing enzyme catalytic subunit 3H involved_in IEA GOC GO_REF:0000108 NCBI chr22:39,097,244...39,104,067
Ensembl chr22:39,097,224...39,104,067 		JBrowse link
G D APOBEC3Z1 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3Z1 involved_in IEA GOC GO_REF:0000108
G D APOBEC3Z3 apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 3Z3 involved_in IEA GOC GO_REF:0000108 NCBI chr10:25,910,973...25,917,508
Ensembl chr10:25,911,291...25,913,808 		JBrowse link
G D CBX7 chromobox 7 involved_in IEA GOC GO_REF:0000108 NCBI chr10:25,876,022...25,896,284
Ensembl chr10:25,876,016...25,893,501 		JBrowse link
G N Cda cytidine deaminase involved_in ISO
IEA		 RGD
TreeGrafter
InterPro
Ensembl		 PMID:675715 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2316616 NCBI chrNW_004624764:5,621,888...5,645,055
Ensembl chrNW_004624764:5,621,899...5,645,850 		JBrowse link
G G CDA cytidine deaminase involved_in ISO
IEA		 RGD
TreeGrafter
InterPro		 PMID:675715 GO_REF:0000002 GO_REF:0000118 RGD:2316616 NCBI chr20:111,931,365...111,960,172
Ensembl chr20:111,931,364...111,960,036 		JBrowse link
G P CDA cytidine deaminase involved_in ISO
IEA
IBA		 RGD
TreeGrafter
GO_Central
InterPro
Ensembl		 PMID:675715 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:2316616 NCBI chr 6:78,824,248...78,849,154
Ensembl chr 6:78,824,270...78,849,547 		JBrowse link
G S Cda cytidine deaminase involved_in ISO
IEA		 RGD
TreeGrafter
InterPro
Ensembl		 PMID:675715 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2316616 NCBI chrNW_004936474:6,543,295...6,564,575
Ensembl chrNW_004936474:6,543,220...6,566,308 		JBrowse link
G D CDA cytidine deaminase involved_in ISO
IEA		 RGD
TreeGrafter
Ensembl
GOC
InterPro		 PMID:675715 GO_REF:0000002 GO_REF:0000107 GO_REF:0000108 GO_REF:0000118 RGD:2316616 NCBI chr 2:78,305,328...78,327,229
Ensembl chr 2:78,304,726...78,327,247 		JBrowse link
G B CDA cytidine deaminase involved_in ISO
IEA		 RGD
TreeGrafter
InterPro
Ensembl		 PMID:675715 GO_REF:0000002 GO_REF:0000107 GO_REF:0000118 RGD:2316616 NCBI chr 1:19,538,696...19,568,008
Ensembl chr 1:20,583,441...20,612,711 		JBrowse link
G C Cda cytidine deaminase involved_in ISO (PMID:9596658) RGD
UniProt		 PMID:675715 PMID:9596658 RGD:2316616 NCBI chrNW_004955452:1,131,968...1,156,777
Ensembl chrNW_004955452:1,132,049...1,156,565 		JBrowse link
G R Cda cytidine deaminase involved_in IDA
IBA
ISO		 GO_REF:0000033
(PMID:9596658)		 GO_Central
RGD		 PMID:9596658 PMID:675715 GO_REF:0000033, RGD:2316616 NCBI chr 5:150,556,615...150,583,231
Ensembl chr 5:150,556,615...150,583,231 		JBrowse link
G M Cda cytidine deaminase involved_in ISO
IBA		 RGD
GO_Central
MGI		 PMID:675715 GO_REF:0000033 GO_REF:0000096 GO_REF:0000119 MGI:4417868 MGI:4834177 RGD:2316616 NCBI chr 4:138,065,839...138,095,623
Ensembl chr 4:138,065,735...138,095,303 		JBrowse link
G H CDA cytidine deaminase involved_in ISO
IEA
IBA
IDA		 (PMID:9596658) RGD
TreeGrafter
GO_Central
UniProt
InterPro
Ensembl		 PMID:675715 PMID:9596658 GO_REF:0000002 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 RGD:2316616 NCBI chr 1:20,589,097...20,618,903
Ensembl chr 1:20,589,086...20,618,903 		JBrowse link
G N Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO (PMID:26945630) UniProt PMID:26945630 NCBI chrNW_004624748:5,420,395...5,467,215
Ensembl chrNW_004624748:5,426,215...5,467,082 		JBrowse link
G G CDADC1 cytidine and dCMP deaminase domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:27,165,870...27,212,179
Ensembl chr 3:27,177,026...27,212,171 		JBrowse link
G P CDADC1 cytidine and dCMP deaminase domain containing 1 involved_in IEA
IBA		 Ensembl
GO_Central		 GO_REF:0000033 GO_REF:0000107 NCBI chr11:18,467,508...18,518,137
Ensembl chr11:18,458,301...18,518,146 		JBrowse link
G S Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936565:2,336,613...2,395,816
Ensembl chrNW_004936565:2,336,744...2,387,195 		JBrowse link
G D CDADC1 cytidine and dCMP deaminase domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr22:2,443,459...2,489,147
Ensembl chr22:2,436,206...2,489,016 		JBrowse link
G B CDADC1 cytidine and dCMP deaminase domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:30,386,671...30,432,112
Ensembl chr13:49,138,498...49,186,541 		JBrowse link
G C Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO (PMID:26945630) UniProt PMID:26945630 NCBI chrNW_004955431:2,724,988...2,767,539
Ensembl chrNW_004955431:2,725,742...2,767,664 		JBrowse link
G R Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO (PMID:26945630) RGD PMID:26945630 NCBI chr15:33,726,590...33,755,611
Ensembl chr15:33,723,435...33,755,576 		JBrowse link
G M Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr14:59,796,837...59,835,433
Ensembl chr14:59,796,837...59,835,408 		JBrowse link
G H CDADC1 cytidine and dCMP deaminase domain containing 1 involved_in IDA
IBA		 (PMID:26945630) UniProt
GO_Central		 PMID:26945630 GO_REF:0000033 NCBI chr13:49,247,925...49,293,485
Ensembl chr13:49,247,925...49,293,485 		JBrowse link
G P DCTD dCMP deaminase involved_in IBA GO_Central GO_REF:0000033 NCBI chr15:44,466,312...44,492,594
Ensembl chr15:44,466,315...44,490,831 		JBrowse link
G R Dctd dCMP deaminase involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr16:44,066,952...44,098,654
Ensembl chr16:44,055,128...44,098,446 		JBrowse link
G M Dctd dCMP deaminase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 8:48,552,127...48,594,702
Ensembl chr 8:48,552,127...48,606,268 		JBrowse link
G H DCTD dCMP deaminase involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:182,890,091...182,917,611
Ensembl chr 4:182,890,060...182,917,936 		JBrowse link
G P PINK1 PTEN induced kinase 1 involved_in IEA InterPro GO_REF:0000002 NCBI chr 6:78,863,195...78,884,663
Ensembl chr 6:78,863,190...78,884,640 		JBrowse link
G M Pycr3 pyrroline-5-carboxylate reductase 3 acts_upstream_of_or_within ISO MGI GO_REF:0000008 NCBI chr15:75,788,319...75,793,369
Ensembl chr15:75,788,326...75,793,409 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 180414
    metabolic process 103353
      organonitrogen compound metabolic process 49889
        pyrimidine-containing compound metabolic process 699
          pyrimidine nucleoside metabolic process 168
            pyrimidine ribonucleoside metabolic process 94
              cytidine metabolic process 75
                cytidine biosynthetic process + 0
                cytidine catabolic process + 75
Path 2
Term Annotations click to browse term
  biological_process 180414
    metabolic process 103353
      primary metabolic process 89779
        nucleobase-containing compound metabolic process 51248
          nucleobase-containing small molecule metabolic process 6206
            nucleoside metabolic process 569
              pyrimidine nucleoside metabolic process 168
                pyrimidine ribonucleoside metabolic process 94
                  cytidine metabolic process 75
                    cytidine biosynthetic process + 0
                    cytidine catabolic process + 75
paths to the root