CDA (cytidine deaminase) - Rat Genome Database

Name: CDA
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: CDA (cytidine deaminase) Canis lupus familiaris

Analyze

Symbol:

CDA

Name:

cytidine deaminase

RGD ID:

12162392

Description:

ENCODES a protein that exhibits cytidine deaminase activity (ortholog); INVOLVED IN cellular response to external biotic stimulus (ortholog); cytidine deamination (ortholog); response to cycloheximide (ortholog); PARTICIPATES IN beta-ureidopropionase deficiency pathway; capecitabine pharmacodynamics pathway; capecitabine pharmacokinetics pathway; ASSOCIATED WITH 3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ortholog); Breast Neoplasms (ortholog); congenital disorder of glycosylation Ir (ortholog); FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDA (cytidine deaminase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Cda (cytidine deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Cda (cytidine deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cda (cytidine deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDA (cytidine deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cda (cytidine deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDA (cytidine deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDA (cytidine deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cda (cytidine deaminase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	78,305,328 - 78,327,229 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	78,304,726 - 78,327,247 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	74,819,639 - 74,841,500 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	78,872,416 - 78,894,283 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	78,870,359 - 78,894,541 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	75,690,869 - 75,712,919 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	76,702,707 - 76,724,560 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	77,706,391 - 77,728,271 (-)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

3-Hydroxy-3-Methylglutaryl-CoA Lyase Deficiency (ISO)

Breast Neoplasms (ISO)

congenital disorder of glycosylation Ir (ISO)

hyperprolinemia type 2 (ISO)

lung non-small cell carcinoma (ISO)

Parkinson's disease 6 (ISO)

stomach cancer (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to external biotic stimulus (ISO)

cytidine deamination (IEA,ISO)

negative regulation of cell growth (IEA)

negative regulation of nucleotide metabolic process (IEA)

response to cycloheximide (ISO)

UMP salvage (IEA)

Cellular Component

cytoplasm (IEA)

cytosol (IEA,ISO)

Molecular Function

cytidine deaminase activity (IEA,ISO)

hydrolase activity (IEA)

identical protein binding (IEA)

metal ion binding (IEA)

nucleoside binding (IEA)

protein binding (ISO)

protein homodimerization activity (IEA)

zinc ion binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

beta-ureidopropionase deficiency pathway (ISO)

capecitabine pharmacodynamics pathway (ISO)

capecitabine pharmacokinetics pathway (ISO)

dihydropyrimidinase deficiency pathway (ISO)

mitochondrial neurogastrointestinal encephalopathy syndrome pathway (ISO)

orotic aciduria 1 pathway (ISO)

pyrimidine metabolic pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

CDA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	78,305,328 - 78,327,229 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	78,304,726 - 78,327,247 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	74,819,639 - 74,841,500 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	78,872,416 - 78,894,283 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	78,870,359 - 78,894,541 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	75,690,869 - 75,712,919 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	76,702,707 - 76,724,560 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	77,706,391 - 77,728,271 (-)	NCBI		UU_Cfam_GSD_1.0

CDA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	20,589,097 - 20,618,903 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	20,589,086 - 20,618,903 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	20,915,590 - 20,945,396 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	20,788,031 - 20,817,988 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	1	20,660,836 - 20,690,702	NCBI
Celera	1	19,239,772 - 19,269,752 (+)	NCBI		Celera
Cytogenetic Map	1	p36.12	NCBI
HuRef	1	19,161,467 - 19,190,528 (+)	NCBI		HuRef
CHM1_1	1	21,025,824 - 21,055,781 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	20,414,048 - 20,443,922 (+)	NCBI		T2T-CHM13v2.0

Cda
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	138,065,839 - 138,095,623 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	138,065,735 - 138,095,303 (-)	Ensembl		GRCm39 Ensembl
GRCm38	4	138,338,528 - 138,368,311 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	138,338,424 - 138,367,992 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	137,894,443 - 137,923,870 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	137,610,604 - 137,640,031 (-)	NCBI		MGSCv36	mm8
Celera	4	140,122,623 - 140,152,350 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	70.17	NCBI

Cda
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	155,839,929 - 155,866,541 (-)	NCBI		GRCr8
mRatBN7.2	5	150,556,615 - 150,583,231 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	150,556,615 - 150,583,231 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	153,252,247 - 153,279,877 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	155,026,533 - 155,054,163 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	155,008,554 - 155,036,184 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	156,703,579 - 156,734,541 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	156,703,579 - 156,734,541 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0 Ensembl	5	156,757,044 - 156,781,291 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	160,452,101 - 160,482,729 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	157,117,303 - 157,143,989 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	157,127,441 - 157,153,991 (-)	NCBI
Celera	5	148,950,060 - 148,976,672 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Cda
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955452	1,132,049 - 1,156,565 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955452	1,131,968 - 1,156,777 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	206,506,028 - 206,535,363 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	205,618,335 - 205,647,685 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	19,538,696 - 19,568,008 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	20,583,441 - 20,612,711 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	20,583,441 - 20,612,711 (+)	Ensembl	panpan1.1		panPan2

Cda
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	40,718,495 - 40,739,795 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	6,543,220 - 6,566,308 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	6,543,295 - 6,564,575 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	78,824,270 - 78,849,547 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	78,824,248 - 78,849,154 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	73,017,555 - 73,042,459 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	111,931,365 - 111,960,172 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	111,931,364 - 111,960,036 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666033	4,270,608 - 4,299,725 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cda
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	5,621,899 - 5,645,850 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624764	5,621,888 - 5,645,055 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CDA
244 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium			13	6	5	6	1		12		5	1
Low	5	5	9		1		5	1		8	5	5
Below cutoff								4

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038470876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038531753	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038595992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038660083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_544519	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000045	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000023893 ⟹ ENSCAFP00000022181

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	2	78,304,726 - 78,327,247 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845004629 ⟹ ENSCAFP00845003700

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	2	78,870,359 - 78,894,541 (-)	Ensembl

RefSeq Acc Id:

ENSCAFT00845004637 ⟹ ENSCAFP00845003705

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	2	78,870,359 - 78,894,541 (-)	Ensembl

RefSeq Acc Id:

XM_038470876 ⟹ XP_038326804

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	2	75,690,869 - 75,712,919 (-)	NCBI

RefSeq Acc Id:

XM_038531753 ⟹ XP_038387681

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	2	77,706,391 - 77,728,271 (-)	NCBI

RefSeq Acc Id:

XM_038595992 ⟹ XP_038451920

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	2	76,702,707 - 76,724,560 (-)	NCBI

RefSeq Acc Id:

XM_038660083 ⟹ XP_038516011

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	2	78,872,416 - 78,894,283 (-)	NCBI

RefSeq Acc Id:

XM_544519 ⟹ XP_544519

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	2	78,305,328 - 78,327,229 (-)	NCBI
Dog10K_Boxer_Tasha	2	74,819,639 - 74,841,500 (-)	NCBI

Sequence:

show sequence

AGGAGCCAGCGTGGAGCCGCCGGCCGGGCAGCAGCAGCGAGCGGGCTTCCGCGCCTCCGCCACC
CGCGGGACCGACATGGCCCACGAGCGTCCCGCCAGCGCCCTGGAGCCCGAGCTCGTGCAGCGGC
TGCTGCTCTCCTGCCAGGAGGCCAAGAAGTCCGCCTACTGCCCCTACAGTCACTTCCCCGTGGG
GGCCGCGATCCTCACTCAGGACGGGAGGATCTTCTCCGGGTGCAACATAGAAAATGTCTGTTAC
CCGCTGGGCGTCTGTGCAGAGCGGACAGCCATCCAGAAGGCCATCTCAGAAGGGCACAGAGAGT
TCAGGGCAATTGCTATCTCCAGTGACCTGCAAGATGACTTTATCTCACCATGTGGGGCCTGCAG
ACAATTCATGAGAGAGTTTGGCAGCAACTGGGTTGTCTACATGACCAAGCCGGATGGCACGTAT
GTTGTCAGTACAGTGCTGGAGCTGCTACCTGCCCCCTTCGGGTCCATAGGCTGGCAGAAGGTCC
AGTGAAGGTTGGGAAACAGCCACAGCCTGGAAGAGCCTGGCTTTCCGTGCGTACCTAAGGGGAT
TGCTGCCCAGAGAACTCGACGAAGATGTTCTCACAGACCTGGAGACATCTGCCAAGCGGGCTGG
GCTGGGCAGAGATGGCTCTTCCAGGTTACACAGTCAAGCACGGCGGTCTTCACTGAAGCGATAA
AAGGTTTCACTCTGGCCCGGGCCAGCATCCCTCCTTGCAACCCACCTTGTCCTTCCCGGGACAG
GAGCACCTATCCCTTCCTTTCCTTCCTTCGGGGCCCTCTTTAAAATTCCAGCAAGTCTGGACTG
CTTCCCCGTCAGCCTTCCCAAGGTTCTATCCTGTTCTGAGCAACTTTTCTAATTATAGACAACA
CAGAACATCTGACTTGGGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038326804	(Get FASTA)	NCBI Sequence Viewer
	XP_038387681	(Get FASTA)	NCBI Sequence Viewer
	XP_038451920	(Get FASTA)	NCBI Sequence Viewer
	XP_038516011	(Get FASTA)	NCBI Sequence Viewer
	XP_544519	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000022181.2
	ENSCAFP00000074073.1
	ENSCAFP00030011213.1
	ENSCAFP00845003700.1
	ENSCAFP00845003705
	ENSCAFP00845003705.1

RefSeq Acc Id:	XP_544519 ⟸ XM_544519
- UniProtKB:	A0A8C0K6L8 (UniProtKB/TrEMBL), A0A8C0MP51 (UniProtKB/TrEMBL), A0A8I3MFS9 (UniProtKB/TrEMBL), A0A8I3N2Q2 (UniProtKB/TrEMBL), A0A8P0PQS0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAHERPASALEPELVQRLLLSCQEAKKSAYCPYSHFPVGAAILTQDGRIFSGCNIENVCYPLGV CAERTAIQKAISEGHREFRAIAISSDLQDDFISPCGACRQFMREFGSNWVVYMTKPDGTYVVST VLELLPAPFGSIGWQKVQ hide sequence

RefSeq Acc Id:

ENSCAFP00000022181 ⟸ ENSCAFT00000023893

RefSeq Acc Id:

XP_038326804 ⟸ XM_038470876

RefSeq Acc Id:

XP_038451920 ⟸ XM_038595992

RefSeq Acc Id:	XP_038516011 ⟸ XM_038660083
- UniProtKB:	A0A8C0K6L8 (UniProtKB/TrEMBL), A0A8C0MP51 (UniProtKB/TrEMBL), A0A8I3MFS9 (UniProtKB/TrEMBL), A0A8I3N2Q2 (UniProtKB/TrEMBL), A0A8P0PQS0 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038387681 ⟸ XM_038531753
- UniProtKB:	A0A8C0K6L8 (UniProtKB/TrEMBL), A0A8C0MP51 (UniProtKB/TrEMBL), A0A8I3MFS9 (UniProtKB/TrEMBL), A0A8I3N2Q2 (UniProtKB/TrEMBL), A0A8P0PQS0 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCAFP00845003705 ⟸ ENSCAFT00845004637

RefSeq Acc Id:

ENSCAFP00845003700 ⟸ ENSCAFT00845004629

Protein Domains

CMP/dCMP-type deaminase

Promoters

RGD ID:

13682622

Promoter ID:

EPDNEW_C689

Type:

initiation region

Name:

CDA_1

Description:

cytidine deaminase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	2	78,327,181 - 78,327,241	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000015049	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030006962	UniProtKB/TrEMBL
	ENSCAFG00845002612	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000023893.4	UniProtKB/TrEMBL
	ENSCAFT00000095989.1	UniProtKB/TrEMBL
	ENSCAFT00030012825.1	UniProtKB/TrEMBL
	ENSCAFT00845004629.1	UniProtKB/TrEMBL
	ENSCAFT00845004637	ENTREZGENE
	ENSCAFT00845004637.1	UniProtKB/TrEMBL
Gene3D-CATH	Cytidine Deaminase, domain 2	UniProtKB/TrEMBL
InterPro	APOBEC/CMP_deaminase_Zn-bd	UniProtKB/TrEMBL
	CMP_dCMP_dom	UniProtKB/TrEMBL
	Cyt_deam_tetra	UniProtKB/TrEMBL
	Cytidine_deaminase-like	UniProtKB/TrEMBL
KEGG Report	cfa:487393	UniProtKB/TrEMBL
NCBI Gene	CDA	ENTREZGENE
PANTHER	CYTIDINE DEAMINASE	UniProtKB/TrEMBL
	CYTIDINE DEAMINASE	UniProtKB/TrEMBL
Pfam	dCMP_cyt_deam_1	UniProtKB/TrEMBL
PROSITE	CYT_DCMP_DEAMINASES_1	UniProtKB/TrEMBL
	CYT_DCMP_DEAMINASES_2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF53927	UniProtKB/TrEMBL
UniProt	A0A8C0K6L8	ENTREZGENE
	A0A8C0MP51	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3MFS9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3N2Q2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0PQS0	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:38983	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB