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ONTOLOGY REPORT - ANNOTATIONS

Term:collagen trimer
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Accession:GO:0005581 term browser browse the term
Definition:A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
Synonyms:xref: Wikipedia:Collagen
 only_in_taxon: NCBITaxon:33208 ! Metazoa


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collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADIPOQ adiponectin, C1Q and collagen domain containing part_of IEA UniProt GO_REF:0000043 NCBI chr 3:186,842,710...186,858,463
Ensembl chr 3:186,842,704...186,858,463 		JBrowse link
G C1QA complement C1q A chain part_of IEA UniProt GO_REF:0000043 NCBI chr 1:22,636,463...22,639,678
Ensembl chr 1:22,635,077...22,639,678 		JBrowse link
G C1QB complement C1q B chain part_of IEA UniProt GO_REF:0000043 NCBI chr 1:22,653,236...22,661,637
Ensembl chr 1:22,652,762...22,661,637 		JBrowse link
G C1QC complement C1q C chain part_of IEA UniProt GO_REF:0000043 NCBI chr 1:22,643,633...22,648,108
Ensembl chr 1:22,643,014...22,648,110 		JBrowse link
G C1QL1 complement C1q like 1 part_of IEA UniProt GO_REF:0000043 NCBI chr17:44,959,693...44,968,303
Ensembl chr17:44,959,693...44,968,303 		JBrowse link
G C1QL2 complement C1q like 2 part_of IEA UniProt GO_REF:0000043 NCBI chr 2:119,156,243...119,158,751
Ensembl chr 2:119,156,243...119,158,751 		JBrowse link
G C1QL3 complement C1q like 3 part_of IEA UniProt GO_REF:0000043 NCBI chr10:16,513,734...16,521,879
Ensembl chr10:16,513,734...16,521,879 		JBrowse link
G C1QL4 complement C1q like 4 part_of IEA UniProt GO_REF:0000043 NCBI chr12:49,332,409...49,337,188
Ensembl chr12:49,332,409...49,337,188 		JBrowse link
G C1QTNF1 C1q and TNF related 1 part_of IEA UniProt GO_REF:0000043 NCBI chr17:79,022,934...79,049,788
Ensembl chr17:79,022,814...79,049,788 		JBrowse link
G C1QTNF2 C1q and TNF related 2 part_of IEA UniProt GO_REF:0000043 NCBI chr 5:160,347,754...160,370,626
Ensembl chr 5:160,347,754...160,370,641 		JBrowse link
G C1QTNF3 C1q and TNF related 3 part_of IEA UniProt GO_REF:0000043 NCBI chr 5:34,017,858...34,244,724
Ensembl chr 5:34,017,858...34,043,213 		JBrowse link
G C1QTNF5 C1q and TNF related 5 part_of IEA UniProt GO_REF:0000043 NCBI chr11:119,338,942...119,346,705
Ensembl chr11:119,338,942...119,340,940 		JBrowse link
G C1QTNF6 C1q and TNF related 6 part_of IEA UniProt GO_REF:0000043 NCBI chr22:37,180,166...37,199,423
Ensembl chr22:37,180,166...37,199,385 		JBrowse link
G C1QTNF7 C1q and TNF related 7 part_of IEA UniProt GO_REF:0000043 NCBI chr 4:15,339,786...15,446,167
Ensembl chr 4:15,339,818...15,446,167 		JBrowse link
G C1QTNF8 C1q and TNF related 8 part_of IEA UniProt GO_REF:0000043 NCBI chr16:1,088,226...1,096,306
Ensembl chr16:1,088,226...1,096,711 		JBrowse link
G C1QTNF9 C1q and TNF related 9 part_of IEA UniProt GO_REF:0000043 NCBI chr13:24,307,166...24,322,531
Ensembl chr13:24,307,166...24,322,535 		JBrowse link
G C1QTNF9B C1q and TNF related 9B part_of IEA UniProt GO_REF:0000043 NCBI chr13:23,891,099...23,897,502
Ensembl chr13:23,891,099...23,897,502 		JBrowse link
G CCBE1 collagen and calcium binding EGF domains 1 part_of IEA UniProt GO_REF:0000043 NCBI chr18:59,430,939...59,697,721
Ensembl chr18:59,430,939...59,697,662 		JBrowse link
G CD36 CD36 molecule (CD36 blood group) part_of IEA UniProt GO_REF:0000043 NCBI chr 7:80,602,207...80,679,274
Ensembl chr 7:80,369,575...80,679,277 		JBrowse link
G COL10A1 collagen type X alpha 1 chain part_of TAS
IEA		 (PMID:8554571) PINC
UniProt		 PMID:8554571 GO_REF:0000043 NCBI chr 6:116,118,909...116,217,144
Ensembl chr 6:116,118,909...116,158,747 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain part_of IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 1:102,876,473...103,108,522
Ensembl chr 1:102,876,467...103,108,872 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain part_of IEA
IBA		 Ensembl
TreeGrafter
GO_Central
UniProt		 GO_REF:0000033 GO_REF:0000043 GO_REF:0000107 GO_REF:0000118 NCBI chr 6:33,162,694...33,193,519
Ensembl chr 6:33,162,681...33,192,499 		JBrowse link
G COL12A1 collagen type XII alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 6:75,084,326...75,206,053
Ensembl chr 6:75,084,326...75,206,267 		JBrowse link
G COL13A1 collagen type XIII alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr10:69,801,906...69,959,144
Ensembl chr10:69,801,880...69,964,275 		JBrowse link
G COL14A1 collagen type XIV alpha 1 chain part_of IEA
NAS		 (PMID:9427527) UniProt PMID:9427527 GO_REF:0000043 NCBI chr 8:120,124,454...120,373,573
Ensembl chr 8:120,059,780...120,373,573 		JBrowse link
G COL15A1 collagen type XV alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 9:98,943,907...99,070,787
Ensembl chr 9:98,943,179...99,070,787 		JBrowse link
G COL16A1 collagen type XVI alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 1:31,652,263...31,704,017
Ensembl chr 1:31,652,263...31,704,319 		JBrowse link
G COL17A1 collagen type XVII alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr10:104,031,286...104,085,880
Ensembl chr10:104,031,286...104,085,880 		JBrowse link
G COL18A1 collagen type XVIII alpha 1 chain part_of IEA
IBA
TAS		 (PMID:10942434) UniProt
GO_Central
PINC		 PMID:10942434 GO_REF:0000033 GO_REF:0000043 NCBI chr21:45,405,165...45,513,720
Ensembl chr21:45,405,165...45,513,720 		JBrowse link
G COL19A1 collagen type XIX alpha 1 chain part_of NAS
IEA
TAS		 (PMID:7775380)
(PMID:9143499)		 UniProt
PINC		 PMID:7775380 PMID:9143499 GO_REF:0000043 NCBI chr 6:69,866,556...70,212,468
Ensembl chr 6:69,866,556...70,212,468 		JBrowse link
G COL1A1 collagen type I alpha 1 chain part_of IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr17:50,184,101...50,201,631
Ensembl chr17:50,184,101...50,201,632 		JBrowse link
G COL1A2 collagen type I alpha 2 chain part_of IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 7:94,394,895...94,431,227
Ensembl chr 7:94,394,895...94,431,227 		JBrowse link
G COL20A1 collagen type XX alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr20:63,293,186...63,334,806
Ensembl chr20:63,293,186...63,334,851 		JBrowse link
G COL21A1 collagen type XXI alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 6:56,056,590...56,394,128
Ensembl chr 6:56,056,590...56,394,094 		JBrowse link
G COL22A1 collagen type XXII alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 8:138,588,235...138,914,041
Ensembl chr 8:138,588,235...138,914,041 		JBrowse link
G COL23A1 collagen type XXIII alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 5:178,237,618...178,590,393
Ensembl chr 5:178,237,476...178,590,393 		JBrowse link
G COL24A1 collagen type XXIV alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 1:85,729,233...86,156,984
Ensembl chr 1:85,729,233...86,156,943 		JBrowse link
G COL25A1 collagen type XXV alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 4:108,808,725...109,302,658
Ensembl chr 4:108,808,725...109,302,752 		JBrowse link
G COL26A1 collagen type XXVI alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 7:101,362,388...101,559,024
Ensembl chr 7:101,362,875...101,559,024 		JBrowse link
G COL27A1 collagen type XXVII alpha 1 chain part_of IEA
IBA		 UniProt
GO_Central		 GO_REF:0000033 GO_REF:0000043 NCBI chr 9:114,154,098...114,312,511
Ensembl chr 9:114,155,537...114,312,511 		JBrowse link
G COL28A1 collagen type XXVIII alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 7:7,338,194...7,543,870
Ensembl chr 7:7,356,203...7,535,873 		JBrowse link
G COL2A1 collagen type II alpha 1 chain part_of IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr12:47,972,967...48,006,212
Ensembl chr12:47,972,967...48,004,554 		JBrowse link
G COL3A1 collagen type III alpha 1 chain part_of IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 2:188,974,373...189,012,746
Ensembl chr 2:188,974,373...189,012,746 		JBrowse link
G COL4A1 collagen type IV alpha 1 chain part_of IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr13:110,148,963...110,307,157
Ensembl chr13:110,148,963...110,307,202 		JBrowse link
G COL4A2 collagen type IV alpha 2 chain part_of IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr13:110,307,284...110,513,209
Ensembl chr13:110,305,812...110,513,209 		JBrowse link
G COL4A3 collagen type IV alpha 3 chain part_of IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:227,164,624...227,314,792
Ensembl chr 2:227,164,624...227,314,792 		JBrowse link
G COL4A4 collagen type IV alpha 4 chain part_of IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr 2:226,967,360...227,164,488
Ensembl chr 2:227,002,714...227,164,453 		JBrowse link
G COL4A5 collagen type IV alpha 5 chain part_of IEA UniProt
InterPro		 GO_REF:0000002 GO_REF:0000043 NCBI chr  X:108,439,838...108,697,545
Ensembl chr  X:108,439,838...108,697,545 		JBrowse link
G COL4A6 collagen type IV alpha 6 chain part_of IEA InterPro
UniProt		 GO_REF:0000002 GO_REF:0000043 NCBI chr  X:108,155,614...108,439,458
Ensembl chr  X:108,155,607...108,439,497 		JBrowse link
G COL5A1 collagen type V alpha 1 chain part_of IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 9:134,641,803...134,844,843
Ensembl chr 9:134,641,803...134,844,843 		JBrowse link
G COL5A2 collagen type V alpha 2 chain part_of IEA UniProt
Ensembl		 GO_REF:0000043 GO_REF:0000107 NCBI chr 2:189,031,898...189,441,111
Ensembl chr 2:189,031,898...189,225,312 		JBrowse link
G COL5A3 collagen type V alpha 3 chain part_of IEA UniProt GO_REF:0000043 NCBI chr19:9,959,561...10,010,504
Ensembl chr19:9,959,561...10,010,504 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr21:45,981,770...46,005,048
Ensembl chr21:45,981,770...46,005,050 		JBrowse link
G COL6A2 collagen type VI alpha 2 chain part_of IEA UniProt GO_REF:0000043 NCBI chr21:46,098,112...46,132,848
Ensembl chr21:46,098,112...46,132,848 		JBrowse link
G COL6A3 collagen type VI alpha 3 chain part_of IEA Ensembl
UniProt		 GO_REF:0000043 GO_REF:0000107 NCBI chr 2:237,324,018...237,414,164
Ensembl chr 2:237,324,003...237,414,328 		JBrowse link
G COL6A5 collagen type VI alpha 5 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 3:130,345,672...130,484,846
Ensembl chr 3:130,345,516...130,484,846 		JBrowse link
G COL6A6 collagen type VI alpha 6 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 3:130,516,720...130,677,042
Ensembl chr 3:130,517,177...130,677,044 		JBrowse link
G COL7A1 collagen type VII alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 3:48,564,073...48,595,329
Ensembl chr 3:48,564,073...48,595,329 		JBrowse link
G COL8A1 collagen type VIII alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 3:99,638,594...99,799,217
Ensembl chr 3:99,638,475...99,799,226 		JBrowse link
G COL8A2 collagen type VIII alpha 2 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 1:36,095,239...36,125,222
Ensembl chr 1:36,095,239...36,125,222 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 6:70,215,061...70,303,084
Ensembl chr 6:70,216,040...70,303,084 		JBrowse link
G COL9A2 collagen type IX alpha 2 chain part_of IEA UniProt GO_REF:0000043 NCBI chr 1:40,300,489...40,317,286
Ensembl chr 1:40,300,489...40,317,813 		JBrowse link
G COL9A3 collagen type IX alpha 3 chain part_of IEA UniProt GO_REF:0000043 NCBI chr20:62,816,213...62,841,159
Ensembl chr20:62,816,244...62,841,159 		JBrowse link
G COLEC10 collectin subfamily member 10 part_of IEA UniProt GO_REF:0000043 NCBI chr 8:118,952,263...119,108,455
Ensembl chr 8:118,995,452...119,108,455 		JBrowse link
G COLEC11 collectin subfamily member 11 part_of IEA UniProt GO_REF:0000043 NCBI chr 2:3,595,112...3,644,644
Ensembl chr 2:3,594,832...3,644,644 		JBrowse link
G COLEC12 collectin subfamily member 12 part_of IEA UniProt GO_REF:0000043 NCBI chr18:316,737...500,701
Ensembl chr18:316,737...500,722 		JBrowse link
G COLQ collagen like tail subunit of asymmetric acetylcholinesterase part_of IEA UniProt GO_REF:0000043 NCBI chr 3:15,450,133...15,521,706
Ensembl chr 3:15,450,133...15,521,751 		JBrowse link
G CTHRC1 collagen triple helix repeat containing 1 part_of IEA UniProt GO_REF:0000043 NCBI chr 8:103,371,538...103,382,989
Ensembl chr 8:103,371,538...103,382,989 		JBrowse link
G EDA ectodysplasin A part_of IEA UniProt GO_REF:0000043 NCBI chr  X:69,616,113...70,039,472
Ensembl chr  X:69,616,067...70,039,472 		JBrowse link
G EMID1 EMI domain containing 1 part_of IEA UniProt GO_REF:0000043 NCBI chr22:29,205,896...29,259,597
Ensembl chr22:29,205,896...29,259,597 		JBrowse link
G EMILIN1 elastin microfibril interfacer 1 part_of IEA UniProt GO_REF:0000043 NCBI chr 2:27,078,615...27,086,403
Ensembl chr 2:27,078,615...27,086,403 		JBrowse link
G EMILIN2 elastin microfibril interfacer 2 part_of IEA UniProt GO_REF:0000043 NCBI chr18:2,846,232...2,916,003
Ensembl chr18:2,847,006...2,916,003 		JBrowse link
G FCN1 ficolin 1 part_of IEA UniProt GO_REF:0000043 NCBI chr 9:134,903,232...134,917,912
Ensembl chr 9:134,903,232...134,917,912 		JBrowse link
G FCN2 ficolin 2 part_of IEA UniProt GO_REF:0000043 NCBI chr 9:134,864,144...134,887,523
Ensembl chr 9:134,880,810...134,887,523 		JBrowse link
G FCN3 ficolin 3 part_of IEA UniProt GO_REF:0000043 NCBI chr 1:27,369,110...27,374,824
Ensembl chr 1:27,369,110...27,374,824 		JBrowse link
G GLDN gliomedin part_of IEA UniProt GO_REF:0000043 NCBI chr15:51,341,655...51,413,365
Ensembl chr15:51,341,655...51,408,005 		JBrowse link
G LOC124906938 collagen alpha-2(IV) chain-like part_of IEA UniProt GO_REF:0000043
G LOX lysyl oxidase part_of IEA Ensembl GO_REF:0000107 NCBI chr 5:122,063,195...122,078,259
Ensembl chr 5:122,063,195...122,078,413 		JBrowse link
G MARCO macrophage receptor with collagenous structure part_of IEA UniProt GO_REF:0000043 NCBI chr 2:118,942,194...118,994,660
Ensembl chr 2:118,942,194...118,994,660 		JBrowse link
G MBL2 mannose binding lectin 2 part_of IEA UniProt GO_REF:0000043 NCBI chr10:52,765,380...52,772,784
Ensembl chr10:52,765,380...52,772,784 		JBrowse link
G MMP1 matrix metallopeptidase 1 part_of IEA UniProt GO_REF:0000043 NCBI chr11:102,789,919...102,798,160
Ensembl chr11:102,789,401...102,798,160 		JBrowse link
G MMP8 matrix metallopeptidase 8 part_of IEA UniProt GO_REF:0000043 NCBI chr11:102,711,796...102,724,954
Ensembl chr11:102,711,796...102,727,050 		JBrowse link
G MSR1 macrophage scavenger receptor 1 part_of IEA UniProt GO_REF:0000043 NCBI chr 8:16,107,881...16,192,651
Ensembl chr 8:16,107,878...16,567,490 		JBrowse link
G OTOL1 otolin 1 part_of IEA UniProt GO_REF:0000043 NCBI chr 3:161,496,808...161,503,942
Ensembl chr 3:161,496,808...161,503,942 		JBrowse link
G P4HA1 prolyl 4-hydroxylase subunit alpha 1 part_of IEA UniProt GO_REF:0000043 NCBI chr10:73,007,217...73,096,866
Ensembl chr10:73,007,217...73,096,974 		JBrowse link
G PABIR2 PABIR family member 2 part_of IEA UniProt GO_REF:0000043 NCBI chr  X:134,769,566...134,797,205
Ensembl chr  X:134,769,566...134,797,232 		JBrowse link
G PCOLCE procollagen C-endopeptidase enhancer part_of IEA UniProt GO_REF:0000043 NCBI chr 7:100,602,363...100,608,175
Ensembl chr 7:100,602,363...100,608,175 		JBrowse link
G PCOLCE2 procollagen C-endopeptidase enhancer 2 part_of IEA UniProt GO_REF:0000043 NCBI chr 3:142,817,874...142,889,083
Ensembl chr 3:142,815,922...142,889,206 		JBrowse link
G PLOD1 procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 part_of IEA UniProt GO_REF:0000043 NCBI chr 1:11,934,717...11,975,537
Ensembl chr 1:11,934,205...11,975,538 		JBrowse link
G PLOD3 procollagen-lysine,2-oxoglutarate 5-dioxygenase 3 part_of IEA UniProt GO_REF:0000043 NCBI chr 7:101,205,984...101,217,581
Ensembl chr 7:101,205,977...101,218,420 		JBrowse link
G RPS18 ribosomal protein S18 part_of IEA UniProt GO_REF:0000043 NCBI chr 6:33,272,075...33,276,511
Ensembl chr 6:33,272,075...33,276,511 		JBrowse link
G RXRB retinoid X receptor beta part_of IEA UniProt GO_REF:0000043 NCBI chr 6:33,193,588...33,200,853
Ensembl chr 6:33,193,588...33,200,665 		JBrowse link
G SAAL1 serum amyloid A like 1 part_of IEA UniProt GO_REF:0000043 NCBI chr11:18,080,292...18,106,082
Ensembl chr11:18,069,935...18,106,087 		JBrowse link
G SCARA3 scavenger receptor class A member 3 part_of IEA UniProt GO_REF:0000043 NCBI chr 8:27,633,463...27,734,141
Ensembl chr 8:27,633,868...27,676,776 		JBrowse link
G SERPINH1 serpin family H member 1 part_of IEA UniProt GO_REF:0000043 NCBI chr11:75,562,253...75,572,783
Ensembl chr11:75,562,056...75,572,783 		JBrowse link
G SFTPA1 surfactant protein A1 part_of IEA UniProt GO_REF:0000043 NCBI chr10:79,610,939...79,615,455
Ensembl chr10:79,610,939...79,615,455 		JBrowse link
G SFTPA2 surfactant protein A2 part_of IEA UniProt GO_REF:0000043 NCBI chr10:79,555,852...79,560,407
Ensembl chr10:79,555,852...79,560,407 		JBrowse link
G SFTPD surfactant protein D part_of IEA UniProt GO_REF:0000043 NCBI chr10:79,937,740...79,982,383
Ensembl chr10:79,937,467...79,982,614 		JBrowse link
G TIMP1 TIMP metallopeptidase inhibitor 1 part_of IEA UniProt GO_REF:0000043 NCBI chr  X:47,582,436...47,586,789
Ensembl chr  X:47,582,408...47,586,789 		JBrowse link
G WDR33 WD repeat domain 33 part_of IEA UniProt GO_REF:0000043 NCBI chr 2:127,701,027...127,811,171
Ensembl chr 2:127,701,027...127,811,187 		JBrowse link
G WDR46 WD repeat domain 46 part_of IEA UniProt GO_REF:0000043 NCBI chr 6:33,279,108...33,289,239
Ensembl chr 6:33,279,108...33,289,247 		JBrowse link
collagen type I trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A1 collagen type I alpha 1 chain part_of
located_in		 IMP
IBA
IEA
NAS
IDA
IPI		 (PMID:14976317), (PMID:17576241)
(PMID:1939261)
(PMID:19932771)
(PMID:26848503), (PMID:28281531)		 UniProt
GO_Central
Ensembl
CAFA
ComplexPortal		 PMID:1939261 PMID:14976317 PMID:17576241 PMID:19932771 PMID:26848503 More... GO_REF:0000033 GO_REF:0000107 NCBI chr17:50,184,101...50,201,631
Ensembl chr17:50,184,101...50,201,632 		JBrowse link
G COL1A2 collagen type I alpha 2 chain part_of
located_in		 TAS
IBA
IEA
IDA
IPI
IMP		 (PMID:6267597)
(PMID:18375391), (PMID:19932771)
(PMID:26848503)
(PMID:17955022)		 UniProt
GO_Central
Ensembl
ComplexPortal		 PMID:6267597 PMID:17955022 PMID:18375391 PMID:19932771 PMID:26848503 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:94,394,895...94,431,227
Ensembl chr 7:94,394,895...94,431,227 		JBrowse link
collagen type II trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain part_of IEA
IBA
IDA		 (PMID:8660302) Ensembl
GO_Central
TreeGrafter
BHF-UCL		 PMID:8660302 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr12:47,972,967...48,006,212
Ensembl chr12:47,972,967...48,004,554 		JBrowse link
collagen type III trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL3A1 collagen type III alpha 1 chain part_of
located_in		 IEA
IPI
NAS
IDA
IMP		 (PMID:18805790)
(PMID:1672129)
(PMID:19932771)
(PMID:17576241), (PMID:7487954)		 Ensembl
ComplexPortal
UniProt
CAFA		 PMID:1672129 PMID:7487954 PMID:17576241 PMID:18805790 PMID:19932771 GO_REF:0000107 NCBI chr 2:188,974,373...189,012,746
Ensembl chr 2:188,974,373...189,012,746 		JBrowse link
collagen type IV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A2 collagen type I alpha 2 chain part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 7:94,394,895...94,431,227
Ensembl chr 7:94,394,895...94,431,227 		JBrowse link
G COL4A1 collagen type IV alpha 1 chain part_of IMP
IEA		 (PMID:16107487) BHF-UCL
Ensembl		 PMID:16107487 GO_REF:0000107 NCBI chr13:110,148,963...110,307,157
Ensembl chr13:110,148,963...110,307,202 		JBrowse link
G COL4A2 collagen type IV alpha 2 chain part_of IEA
IBA
TAS		 (PMID:2846280), (PMID:3345760) Ensembl
GO_Central
UniProt		 PMID:2846280 PMID:3345760 GO_REF:0000033 GO_REF:0000107 NCBI chr13:110,307,284...110,513,209
Ensembl chr13:110,305,812...110,513,209 		JBrowse link
G COL4A3 collagen type IV alpha 3 chain part_of IDA
IEA		 (PMID:10766752) UniProt
Ensembl		 PMID:10766752 GO_REF:0000107 NCBI chr 2:227,164,624...227,314,792
Ensembl chr 2:227,164,624...227,314,792 		JBrowse link
G COL4A4 collagen type IV alpha 4 chain part_of IDA
IBA
IEA		 (PMID:7523402) UniProt
GO_Central
Ensembl		 PMID:7523402 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:226,967,360...227,164,488
Ensembl chr 2:227,002,714...227,164,453 		JBrowse link
G COL4A5 collagen type IV alpha 5 chain part_of IEA
TAS		 (PMID:2349482) Ensembl
PINC		 PMID:2349482 GO_REF:0000107 NCBI chr  X:108,439,838...108,697,545
Ensembl chr  X:108,439,838...108,697,545 		JBrowse link
G COL4A6 collagen type IV alpha 6 chain part_of NAS
IEA
IBA		 (PMID:8125972) UniProt
TreeGrafter
GO_Central
Ensembl		 PMID:8125972 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr  X:108,155,614...108,439,458
Ensembl chr  X:108,155,607...108,439,497 		JBrowse link
G COL5A2 collagen type V alpha 2 chain part_of IEA TreeGrafter GO_REF:0000118 NCBI chr 2:189,031,898...189,441,111
Ensembl chr 2:189,031,898...189,225,312 		JBrowse link
collagen type IX trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL16A1 collagen type XVI alpha 1 chain part_of IBA GO_Central GO_REF:0000033 NCBI chr 1:31,652,263...31,704,017
Ensembl chr 1:31,652,263...31,704,319 		JBrowse link
G COL9A1 collagen type IX alpha 1 chain part_of
located_in		 TAS
IPI
IEA
IBA
IDA		 (PMID:9707347)
(PMID:27897211)
(PMID:8660302)		 UniProt
ComplexPortal
TreeGrafter
GO_Central
BHF-UCL		 PMID:8660302 PMID:9707347 PMID:27897211 GO_REF:0000033 GO_REF:0000118 NCBI chr 6:70,215,061...70,303,084
Ensembl chr 6:70,216,040...70,303,084 		JBrowse link
G COL9A2 collagen type IX alpha 2 chain part_of
located_in		 IDA
IPI
TAS		 (PMID:8660302)
(PMID:27897211)
(PMID:10364514)		 BHF-UCL
ComplexPortal
PINC		 PMID:8660302 PMID:10364514 PMID:27897211 NCBI chr 1:40,300,489...40,317,286
Ensembl chr 1:40,300,489...40,317,813 		JBrowse link
G COL9A3 collagen type IX alpha 3 chain part_of
located_in		 IDA
IPI
IBA
TAS		 (PMID:8660302)
(PMID:27897211)
(PMID:8586434)		 BHF-UCL
ComplexPortal
GO_Central
PINC		 PMID:8586434 PMID:8660302 PMID:27897211 GO_REF:0000033 NCBI chr20:62,816,213...62,841,159
Ensembl chr20:62,816,244...62,841,159 		JBrowse link
collagen type V trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL28A1 collagen type XXVIII alpha 1 chain part_of IBA GO_Central GO_REF:0000033 NCBI chr 7:7,338,194...7,543,870
Ensembl chr 7:7,356,203...7,535,873 		JBrowse link
G COL5A1 collagen type V alpha 1 chain part_of
located_in		 IMP
IBA
NAS
TAS		 (PMID:9683580)
(PMID:37158802)
(PMID:9042913)		 UniProt
GO_Central
ComplexPortal
PINC		 PMID:9042913 PMID:9683580 PMID:37158802 GO_REF:0000033 NCBI chr 9:134,641,803...134,844,843
Ensembl chr 9:134,641,803...134,844,843 		JBrowse link
G COL5A2 collagen type V alpha 2 chain part_of
located_in		 IMP
IBA
NAS		 (PMID:9425231), (PMID:9783710)
(PMID:37158802)		 UniProt
GO_Central
ComplexPortal		 PMID:9425231 PMID:9783710 PMID:37158802 GO_REF:0000033 NCBI chr 2:189,031,898...189,441,111
Ensembl chr 2:189,031,898...189,225,312 		JBrowse link
G COL5A3 collagen type V alpha 3 chain part_of
located_in		 IEA
NAS		 (PMID:37158802)
(PMID:10722718), (PMID:1571108)		 Ensembl
ComplexPortal
UniProt		 PMID:1571108 PMID:10722718 PMID:37158802 GO_REF:0000107 NCBI chr19:9,959,561...10,010,504
Ensembl chr19:9,959,561...10,010,504 		JBrowse link
collagen type VI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL6A1 collagen type VI alpha 1 chain part_of NAS (PMID:2551668) UniProt PMID:2551668 NCBI chr21:45,981,770...46,005,048
Ensembl chr21:45,981,770...46,005,050 		JBrowse link
G COL6A3 collagen type VI alpha 3 chain part_of TAS (PMID:8782832) PINC PMID:8782832 NCBI chr 2:237,324,018...237,414,164
Ensembl chr 2:237,324,003...237,414,328 		JBrowse link
G DCN decorin ISO RGD PMID:12840020 RGD:728372 NCBI chr12:91,140,484...91,182,817
Ensembl chr12:91,140,484...91,183,217 		JBrowse link
collagen type VII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL7A1 collagen type VII alpha 1 chain part_of TAS (PMID:9375848) PINC PMID:9375848 NCBI chr 3:48,564,073...48,595,329
Ensembl chr 3:48,564,073...48,595,329 		JBrowse link
collagen type VIII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL8A1 collagen type VIII alpha 1 chain part_of TAS (PMID:2029894) PINC PMID:2029894 NCBI chr 3:99,638,594...99,799,217
Ensembl chr 3:99,638,475...99,799,226 		JBrowse link
collagen type X trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL10A1 collagen type X alpha 1 chain located_in IPI (PMID:11839302) ComplexPortal PMID:11839302 NCBI chr 6:116,118,909...116,217,144
Ensembl chr 6:116,118,909...116,158,747 		JBrowse link
collagen type XI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL11A1 collagen type XI alpha 1 chain part_of
located_in		 IDA
IEA
IBA
NAS		 (PMID:3182841)
(PMID:17876790)
(PMID:10486316)		 UniProt
TreeGrafter
GO_Central
ComplexPortal		 PMID:3182841 PMID:10486316 PMID:17876790 GO_REF:0000033 GO_REF:0000118 NCBI chr 1:102,876,473...103,108,522
Ensembl chr 1:102,876,467...103,108,872 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain part_of
located_in		 NAS (PMID:7859284), (PMID:8838804)
(PMID:17876790)		 UniProt
ComplexPortal		 PMID:7859284 PMID:8838804 PMID:17876790 NCBI chr 6:33,162,694...33,193,519
Ensembl chr 6:33,162,681...33,192,499 		JBrowse link
G COL2A1 collagen type II alpha 1 chain located_in NAS (PMID:17876790) ComplexPortal PMID:17876790 NCBI chr12:47,972,967...48,006,212
Ensembl chr12:47,972,967...48,004,554 		JBrowse link
G COL5A2 collagen type V alpha 2 chain located_in NAS (PMID:17876790) ComplexPortal PMID:17876790 NCBI chr 2:189,031,898...189,441,111
Ensembl chr 2:189,031,898...189,225,312 		JBrowse link
collagen type XII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL12A1 collagen type XII alpha 1 chain part_of ISO
TAS
NAS		 (PMID:3476925)
(PMID:1427837)		 RGD
PINC
UniProt		 PMID:1427837 PMID:3476925 PMID:10419532 RGD:727275 NCBI chr 6:75,084,326...75,206,053
Ensembl chr 6:75,084,326...75,206,267 		JBrowse link
collagen type XIII trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL13A1 collagen type XIII alpha 1 chain part_of TAS (PMID:2459707), (PMID:9624150) UniProt PMID:2459707 PMID:9624150 NCBI chr10:69,801,906...69,959,144
Ensembl chr10:69,801,880...69,964,275 		JBrowse link
collagen type XIV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL14A1 collagen type XIV alpha 1 chain part_of NAS (PMID:9427527) UniProt PMID:9427527 NCBI chr 8:120,124,454...120,373,573
Ensembl chr 8:120,059,780...120,373,573 		JBrowse link
collagen type XV trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL15A1 collagen type XV alpha 1 chain part_of TAS (PMID:9651385) UniProt PMID:9651385 NCBI chr 9:98,943,907...99,070,787
Ensembl chr 9:98,943,179...99,070,787 		JBrowse link
collagen type XVI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL16A1 collagen type XVI alpha 1 chain part_of TAS (PMID:1284248) PINC PMID:1284248 NCBI chr 1:31,652,263...31,704,017
Ensembl chr 1:31,652,263...31,704,319 		JBrowse link
collagen type XXVI trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL26A1 collagen type XXVI alpha 1 chain located_in NAS (PMID:1916105) ComplexPortal PMID:1916105 NCBI chr 7:101,362,388...101,559,024
Ensembl chr 7:101,362,875...101,559,024 		JBrowse link
fibrillar collagen trimer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL27A1 collagen type XXVII alpha 1 chain part_of IEA Ensembl GO_REF:0000107 NCBI chr 9:114,154,098...114,312,511
Ensembl chr 9:114,155,537...114,312,511 		JBrowse link
G LUM lumican part_of IDA (PMID:10734230) UniProt PMID:10734230 NCBI chr12:91,102,629...91,111,494
Ensembl chr12:91,102,629...91,111,494 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 20717
    protein-containing complex 7461
      collagen trimer 103
        FACIT collagen trimer + 6
        anchoring collagen complex + 3
        basement membrane collagen trimer + 10
        collagen type VI trimer 3
        collagen type XXVI trimer 1
        collagen type XXVIII trimer 0
        fibrillar collagen trimer + 12
        network-forming collagen trimer + 10
        short-chain collagen trimer + 2
        transmembrane collagen trimer + 1
paths to the root