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Gene-Chemical Interaction Annotations
Gene-Chemical Interaction AnnotationsTerm | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | 17alpha-ethynylestradiol | affects expression | ISO | RGD:733436 | 6480464 | Ethinyl Estradiol affects the expression of COL5A1 mRNA | CTD | PMID:17555576 | 17alpha-ethynylestradiol | increases expression | ISO | RGD:70920 | 6480464 | Ethinyl Estradiol results in increased expression of COL5A1 mRNA | CTD | PMID:12655037 PMID:12075121 | 17alpha-ethynylestradiol | increases expression | EXP | | 6480464 | Ethinyl Estradiol results in increased expression of COL5A1 mRNA | CTD | PMID:18936297 | 17alpha-ethynylestradiol | increases expression | ISO | RGD:733436 | 6480464 | Ethinyl Estradiol results in increased expression of COL5A1 mRNA | CTD | PMID:17942748 | 17alpha-ethynylestradiol | multiple interactions | ISO | RGD:733436 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of COL5A1 mRNA | CTD | PMID:17942748 | 17alpha-ethynylestradiol | affects expression | ISO | RGD:70920 | 6480464 | Ethinyl Estradiol affects the expression of COL5A1 mRNA | CTD | PMID:16079270 | 17alpha-ethynylestradiol | increases expression | ISO | RGD:70920 | 6480464 | Ethinyl Estradiol results in increased expression of COL5A1 mRNA | CTD | PMID:12075121 PMID:12655037 | 17beta-estradiol | decreases expression | EXP | | 6480464 | Estradiol results in decreased expression of COL5A1 mRNA | CTD | PMID:19167446 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:733436 | 6480464 | Tetrachlorodibenzodioxin affects the expression of COL5A1 mRNA | CTD | PMID:20702594 PMID:16962184 | 2,3,7,8-tetrachlorodibenzodioxine | affects expression | ISO | RGD:733436 | 6480464 | Tetrachlorodibenzodioxin affects the expression of COL5A1 mRNA | CTD | PMID:16962184 PMID:20702594 | 2,3,7,8-tetrachlorodibenzodioxine | increases expression | ISO | RGD:733436 | 6480464 | Tetrachlorodibenzodioxin results in increased expression of COL5A1 mRNA | CTD | PMID:17942748 | 2,3,7,8-tetrachlorodibenzodioxine | multiple interactions | ISO | RGD:733436 | 6480464 | [Tetrachlorodibenzodioxin co-treated with Ethinyl Estradiol] results in increased expression of COL5A1 mRNA | CTD | PMID:17942748 | 2,4,6-trinitrobenzenesulfonic acid | multiple interactions | ISO | RGD:733436 | 6480464 | Curcumin inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of COL5A1 mRNA] | CTD | PMID:18200517 | 2,4,6-trinitrobenzenesulfonic acid | increases expression | ISO | RGD:733436 | 6480464 | Trinitrobenzenesulfonic Acid results in increased expression of COL5A1 mRNA | CTD | PMID:18200517 | 2-methylcholine | affects expression | EXP | | 6480464 | beta-methylcholine affects the expression of COL5A1 mRNA | CTD | PMID:21179406 | 3-methylcholanthrene | decreases expression | ISO | RGD:733436 | 6480464 | Methylcholanthrene results in decreased expression of COL5A1 mRNA | CTD | PMID:20713471 | 4-phenylbutyric acid | increases expression | EXP | | 6480464 | 4-phenylbutyric acid results in increased expression of COL5A1 mRNA | CTD | PMID:14583596 | 7,12-dimethyltetraphene | decreases expression | ISO | RGD:70920 | 6480464 | 9,10-Dimethyl-1,2-benzanthracene results in decreased expression of COL5A1 mRNA | CTD | PMID:12376462 | alachlor | increases expression | ISO | RGD:70920 | 6480464 | alachlor results in increased expression of COL5A1 mRNA | CTD | PMID:12419858 | alendronic acid | affects expression | ISO | RGD:70920 | 6480464 | Alendronate affects the expression of COL5A1 mRNA | CTD | PMID:16079270 | all-trans-retinoic acid | increases expression | ISO | RGD:733436 | 6480464 | Tretinoin results in increased expression of COL5A1 mRNA | CTD | PMID:16604517 | all-trans-retinoic acid | decreases expression | EXP | | 6480464 | Tretinoin results in decreased expression of COL5A1 mRNA | CTD | PMID:21934132 | benzo[a]pyrene | multiple interactions | ISO | RGD:733436 | 6480464 | Benzo(a)pyrene promotes the reaction [AHR protein binds to COL5A1 promoter] | CTD | PMID:19654925 | benzo[a]pyrene | increases expression | ISO | RGD:733436 | 6480464 | Benzo(a)pyrene results in increased expression of COL5A1 mRNA | CTD | PMID:15034205 | benzo[a]pyrene | decreases expression | ISO | RGD:733436 | 6480464 | Benzo(a)pyrene results in decreased expression of COL5A1 mRNA | CTD | PMID:21569818 | bisphenol A | increases expression | ISO | RGD:70920 | 6480464 | bisphenol A results in increased expression of COL5A1 mRNA | CTD | PMID:12075121 | C60 fullerene | increases expression | ISO | RGD:70920 | 6480464 | fullerene C60 results in increased expression of COL5A1 mRNA | CTD | PMID:19167457 | ciglitazone | decreases expression | ISO | RGD:70920 | 6480464 | ciglitazone results in decreased expression of COL5A1 mRNA | CTD | PMID:22193206 | crocidolite asbestos | decreases expression | EXP | | 6480464 | Asbestos, Crocidolite results in decreased expression of COL5A1 mRNA | CTD | PMID:18687144 | curcumin | multiple interactions | ISO | RGD:733436 | 6480464 | Curcumin inhibits the reaction [Trinitrobenzenesulfonic Acid results in increased expression of COL5A1 mRNA] | CTD | PMID:18200517 | cyclosporin A | increases expression | EXP | | 6480464 | Cyclosporine results in increased expression of COL5A1 mRNA | CTD | PMID:20106945 | cytarabine | decreases expression | EXP | | 6480464 | Cytarabine results in decreased expression of COL5A1 mRNA | CTD | PMID:21198554 | dexamethasone | decreases expression | ISO | RGD:70920 | 6480464 | Dexamethasone results in decreased expression of COL5A1 mRNA | CTD | PMID:14618091 PMID:20032058 | dexamethasone | decreases expression | ISO | RGD:70920 | 6480464 | Dexamethasone results in decreased expression of COL5A1 mRNA | CTD | PMID:20032058 PMID:14618091 | dexamethasone | multiple interactions | ISO | RGD:70920 | 6480464 | Testosterone inhibits the reaction [Dexamethasone results in decreased expression of COL5A1 mRNA] | CTD | PMID:20032058 | diazoxide | decreases expression | ISO | RGD:733436 | 6480464 | Isoproterenol results in decreased expression of COL5A1 mRNA | CTD | PMID:21335049 | dimethyl sulfoxide | increases expression | ISO | RGD:70920 | 6480464 | Dimethyl Sulfoxide results in increased expression of COL5A1 mRNA | CTD | PMID:22193206 | diuron | increases expression | ISO | RGD:70920 | 6480464 | Diuron results in increased expression of COL5A1 mRNA | CTD | PMID:21551480 | genistein | increases expression | ISO | RGD:70920 | 6480464 | Genistein results in increased expression of COL5A1 mRNA | CTD | PMID:12075121 | isoprenaline | decreases expression | ISO | RGD:733436 | 6480464 | Isoproterenol results in decreased expression of COL5A1 mRNA | CTD | PMID:21335049 | isotretinoin | increases expression | EXP | | 6480464 | Isotretinoin results in increased expression of COL5A1 mRNA | CTD | PMID:20436886 | naphthalene | increases expression | ISO | RGD:733436 | 6480464 | naphthalene results in increased expression of COL5A1 mRNA | CTD | PMID:18978301 | nickel sulfate | decreases expression | ISO | RGD:733436 | 6480464 | nickel sulfate results in decreased expression of COL5A1 mRNA | CTD | PMID:16166746 | ozone | affects expression | ISO | RGD:70920 | 6480464 | Ozone affects the expression of COL5A1 mRNA | CTD | PMID:16716893 | perfluorooctanoic acid | decreases expression | ISO | RGD:70920 | 6480464 | perfluorooctanoic acid results in decreased expression of COL5A1 mRNA | CTD | PMID:19162173 | pirinixic acid | multiple interactions | ISO | RGD:733436 | 6480464 | [pirinixic acid binds to and results in increased activity of PPARA protein] which results in increased expression of COL5A1 mRNA | CTD | PMID:19710929 | pirinixic acid | decreases expression | ISO | RGD:733436 | 6480464 | pirinixic acid results in decreased expression of COL5A1 mRNA | CTD | PMID:17426115 | raloxifene | affects expression | ISO | RGD:70920 | 6480464 | Raloxifene affects the expression of COL5A1 mRNA | CTD | PMID:16079270 | resveratrol | decreases expression | EXP | | 6480464 | resveratrol results in decreased expression of COL5A1 mRNA | CTD | PMID:19167446 | simvastatin | increases expression | ISO | RGD:733436 | 6480464 | Simvastatin results in increased expression of COL5A1 mRNA | CTD | PMID:16274305 | tamoxifen | affects expression | ISO | RGD:733436 | 6480464 | Tamoxifen affects the expression of COL5A1 mRNA | CTD | PMID:17555576 | tert-butyl hydroperoxide | decreases expression | EXP | | 6480464 | tert-Butylhydroperoxide results in decreased expression of COL5A1 mRNA | CTD | PMID:15336504 | testosterone | multiple interactions | ISO | RGD:70920 | 6480464 | Testosterone inhibits the reaction [Dexamethasone results in decreased expression of COL5A1 mRNA] | CTD | PMID:20032058 | testosterone enanthate | affects expression | EXP | | 6480464 | testosterone enanthate affects the expression of COL5A1 mRNA | CTD | PMID:17440010 | tetrachloromethane | increases expression | ISO | RGD:733436 | 6480464 | Carbon Tetrachloride results in increased expression of COL5A1 mRNA | CTD | PMID:17484886 | tetrachloromethane | increases expression | ISO | RGD:70920 | 6480464 | Carbon Tetrachloride results in increased expression of COL5A1 mRNA | CTD | PMID:17056239 | tetradecane | decreases expression | ISO | RGD:70920 | 6480464 | n-tetradecane results in decreased expression of COL5A1 protein | CTD | PMID:17337753 | trans-resveratrol | decreases expression | EXP | | 6480464 | resveratrol results in decreased expression of COL5A1 mRNA | CTD | PMID:19167446 | vanadium atom | decreases expression | EXP | | 6480464 | Vanadium results in decreased expression of COL5A1 mRNA | CTD | PMID:19000753 | vanadium(0) | decreases expression | EXP | | 6480464 | Vanadium results in decreased expression of COL5A1 mRNA | CTD | PMID:19000753 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Ontology Annotations
Molecular Pathway Annotations
Disease Annotations
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Gene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway Annotations
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| External Database Links | |
| KEGG Pathway | Amoebiasis |
| ECM-receptor interaction | |
| Focal adhesion | |
| PI3K-Akt signaling pathway | |
| Protein digestion and absorption | |
| Pathway Interaction Database | Beta1 integrin cell surface interactions (PID:200016) |
| Integrins in angiogenesis (PID:200128) | |
| Syndecan-1-mediated signaling events (PID:200156) | |
| Validated transcriptional targets of deltaNp63 isoforms (PID:200186) | |
References - curated| 1. |
Bouma P, etal., J Biol Chem. 2001 Apr 20;276(16):13356-64. Epub 2001 Jan 19. |
| 2. |
Burrows NP, etal., J Invest Dermatol 1996 Jun;106(6):1273-6. |
| 3. |
GOA_HUMAN data from the GO Consortium |
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Pipeline to import KEGG annotations from KEGG into RGD Pathway Ontology |
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Pipeline to import Pathway Interaction Database annotations from NCI into RGD |
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RGD automated import pipeline for gene-chemical interactions |
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RGD Automated Pipelines |
| 8. |
Takahara K, etal., Am J Hum Genet. 2002 Sep;71(3):451-65. Epub 2002 Jul 17. |
| 9. |
Wenstrup RJ, etal., Am J Hum Genet. 2000 Jun;66(6):1766-76. Epub 2000 Apr 24. |
References - uncurated| PubMed | 10602121 |
| 10722718 | |
| 10796876 | |
| 11741999 | |
| 11751872 | |
| 12477932 | |
| 12847218 | |
| 14504037 | |
| 14702039 | |
| 14970208 | |
| 15095409 | |
| 15136578 | |
| 15164053 | |
| 1571108 | |
| 1572660 | |
| 16430677 | |
| 16431952 | |
| 1722213 | |
| 17407447 | |
| 17965778 | |
| 18305566 | |
| 18353721 | |
| 18443036 | |
| 18487259 | |
| 18818748 | |
| 18972565 | |
| 19019335 | |
| 19042922 | |
| 19180518 | |
| 19422640 | |
| 19426620 | |
| 19527514 | |
| 19654427 | |
| 19913121 | |
| 20140262 | |
| 20301422 | |
| 20359947 | |
| 20452482 | |
| 20625483 | |
| 20628086 | |
| 20635400 | |
| 20673868 | |
| 2071595 | |
| 20719862 | |
| 20798666 | |
| 20834067 | |
| 20847697 | |
| 21139048 | |
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| 21609763 | |
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| 21934170 | |
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| 2745554 | |
| 3571333 | |
| 6501291 | |
| 6693501 | |
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| 8181482 | |
| 8440685 | |
| 8575750 | |
| 8900172 | |
| 9042913 | |
| 9099729 | |
| 9501082 | |
| 9582436 | |
| 9683580 | |
| 9840442 |
RGD Disease Portals| COL5A1 has been annotated in the following RGD Disease Portals. |
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Comparative Map Data| COL5A1 (Homo sapiens) |
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| Col5a1 (Mus musculus) |
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| Col5a1 (Rattus norvegicus) |
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Position Markers| RH45344 |
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| RH76754 |
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| RH93484 |
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| RH75751 |
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| RH101994 |
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| SHGC-147947 |
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| SHGC-143900 |
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| RH70759 |
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| RH70027 |
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| COL5A1_2419 |
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| G54670 |
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QTLs in Region (Human Genome Assembly GRCh37)| The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
Nucleotide Sequences| Nucleotide RefSeqs | NG_008030 | (Get FASTA) | Search GEO for Microarray Profiles |
| NM_000093 | (Get FASTA) | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AB209864 | (Get FASTA) | Search GEO for Microarray Profiles |
| AB371583 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030006 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030007 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030008 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030009 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030010 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030011 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030012 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030013 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030014 | (Get FASTA) | Search GEO for Microarray Profiles | |
| ABBA01030015 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK057231 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AK122763 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL591890 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL603650 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AL645768 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AMYH01021827 | (Get FASTA) | Search GEO for Microarray Profiles | |
| AMYH01021828 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC008760 | (Get FASTA) | Search GEO for Microarray Profiles | |
| BC032405 | (Get FASTA) | Search GEO for Microarray Profiles | |
| CH471090 | (Get FASTA) | Search GEO for Microarray Profiles | |
| D90279 | (Get FASTA) | Search GEO for Microarray Profiles | |
| L38808 | (Get FASTA) | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | NM_000093 | |||||||||||||||||||||||||
| RefSeq Status: | REVIEWED | |||||||||||||||||||||||||
| Type: | CODING | |||||||||||||||||||||||||
| Protein Acc Id: | NP_000084 | |||||||||||||||||||||||||
| Peptide Label: | preproprotein | |||||||||||||||||||||||||
| Position: |
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Protein Sequences| Protein RefSeqs | NP_000084 | (Get FASTA) |
| GenBank Protein | AAA79853 | (Get FASTA) |
| AAH08760 | (Get FASTA) | |
| BAA14323 | (Get FASTA) | |
| BAD93101 | (Get FASTA) | |
| BAG48312 | (Get FASTA) | |
| EAW88128 | (Get FASTA) | |
| EAW88129 | (Get FASTA) | |
| EAW88130 | (Get FASTA) | |
| EAW88131 | (Get FASTA) | |
| EAW88132 | (Get FASTA) | |
| P20908 | (Get FASTA) |
Promoters| RGD ID: | 6863074 | ||||||||||
| Promoter ID: | EPDNEW_H4702 | ||||||||||
| Type: | initiation region | ||||||||||
| Name: | CMC1_1 | ||||||||||
| Description: | COX assembly mitochondrial protein 1 homolog | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||||
| Position: |
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| RGD ID: | 6807520 | ||||||||||
| Promoter ID: | HG_KWN:65500 | ||||||||||
| Type: | CpG-Island | ||||||||||
| SO ACC ID: | SO:0000170 | ||||||||||
| Source: | MPROMDB | ||||||||||
| Tissues & Cell Lines: | HeLa_S3 | ||||||||||
| Transcripts: | ENST00000355306, ENST00000371814, OTTHUMT00000054954 | ||||||||||
| Position: |
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External Database Links| Database | Acc Id | Source(s) |
| COSMIC | COL5A1 | COSMIC |
| Ensembl Genes | ENSG00000130635 | ENTREZGENE |
| Ensembl Protein | ENSP00000360882 | ENTREZGENE |
| Ensembl Transcript | ENST00000371817 | ENTREZGENE |
| Entrez Gene | 1289 | ENTREZGENE |
| Gene3D-CATH | ConA_like_subgrp | UniProtKB/Swiss-Prot |
| HGNC ID | 2209 | ENTREZGENE |
| HomoloGene Group ID | 55434 | ENTREZGENE |
| HPRD ID | 00368 | ENTREZGENE |
| InterPro | Collagen | UniProtKB/Swiss-Prot |
| ConA-like_lec_gl | UniProtKB/Swiss-Prot | |
| ConA-like_subgrp | UniProtKB/Swiss-Prot | |
| Fib_collagen_C | UniProtKB/Swiss-Prot | |
| Laminin_G | UniProtKB/Swiss-Prot | |
| IPI | IPI00844090 | UniProtKB/Swiss-Prot |
| KEGG Report | hsa:1289 | ENTREZGENE, UniProtKB/Swiss-Prot |
| OMIM | 120215 | OMIM |
| 130000 | OMIM | |
| 130010 | OMIM | |
| Pfam | COLFI | UniProtKB/Swiss-Prot |
| Collagen | UniProtKB/Swiss-Prot | |
| Laminin_G_2 | UniProtKB/Swiss-Prot | |
| PharmGKB | PA26724 | PharmGKB |
| ProDom | Fib_collagen_C | UniProtKB/Swiss-Prot |
| PROSITE | LAM_G_DOMAIN; FALSE_NEG | UniProtKB/Swiss-Prot |
| NC1_FIB | UniProtKB/Swiss-Prot | |
| SMART | COLFI | UniProtKB/Swiss-Prot |
| LamG | UniProtKB/Swiss-Prot | |
| TSPN | UniProtKB/Swiss-Prot | |
| Superfamily-SCOP | ConA_like_lec_gl | UniProtKB/Swiss-Prot |
| UniGene | Hs.210283 | ENTREZGENE |
| UniProt | CO5A1_HUMAN | UniProtKB/Swiss-Prot |
| H7BY82_HUMAN | UniProtKB/TrEMBL | |
| Q59EE7_HUMAN | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2011-08-16 | COL5A1 | collagen, type V, alpha 1 | COL5A1 | collagen, type V, alpha 1 | Symbol and/or name change | 39860 | APPROVED |
| More on COL5A1 | |||
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Entrez Gene | ||
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Ensembl Gene | ||
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HGNC Report | ||
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NCBI Map Viewer | ||
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Vista | ||
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Vista + UCSC | ||
| RGD Object Information | |
| RGD ID: | 733435 |
| Created: | 2004-01-12 |
| Species: | Homo sapiens |
| Last Modified: | 2013-04-02 |
| Status: | ACTIVE |
© Bioinformatics Program, HMGC at the Medical College of Wisconsin
RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.




