COL8A2 (collagen type VIII alpha 2 chain) - Rat Genome Database

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Gene: COL8A2 (collagen type VIII alpha 2 chain) Homo sapiens
Analyze
Symbol: COL8A2
Name: collagen type VIII alpha 2 chain
RGD ID: 1313058
HGNC Page HGNC:2216
Description: Predicted to be an extracellular matrix structural constituent conferring tensile strength. Predicted to be involved in extracellular matrix organization. Predicted to act upstream of or within camera-type eye morphogenesis and endothelial cell proliferation. Located in collagen-containing extracellular matrix. Implicated in Fuchs' endothelial dystrophy and posterior polymorphous corneal dystrophy 2.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: collagen alpha-2(VIII) chain; collagen type VIII alpha 2; collagen VIII, alpha-2 polypeptide; collagen, type VIII, alpha 2; dJ665N4.1 (collagen type VIII alpha 2); endothelial collagen; FECD; FECD1; FLJ00201; MGC116970; MGC116972; PPCD; PPCD2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,095,239 - 36,125,222 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,095,239 - 36,125,222 (-)EnsemblGRCh38hg38GRCh38
GRCh37136,560,840 - 36,590,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,333,433 - 36,338,437 (-)NCBINCBI36Build 36hg18NCBI36
Build 34136,229,938 - 36,234,943NCBI
Celera134,835,260 - 34,840,268 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,677,988 - 34,682,528 (-)NCBIHuRef
CHM1_1136,677,163 - 36,682,171 (-)NCBICHM1_1
T2T-CHM13v2.0135,958,119 - 35,988,102 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. RGD HPO Phenotype Annotation Pipeline RGD automated import pipeline for human HPO-to-gene-to-disease annotations
Additional References at PubMed
PMID:2019595   PMID:2029894   PMID:9438378   PMID:9705353   PMID:10686422   PMID:11689488   PMID:12477932   PMID:12782141   PMID:14702039   PMID:14990571   PMID:15015022   PMID:15175909  
PMID:15851557   PMID:15914606   PMID:16303941   PMID:16908762   PMID:16936088   PMID:17471329   PMID:17721297   PMID:18024822   PMID:18464802   PMID:18502986   PMID:20144242   PMID:20551380  
PMID:21139683   PMID:21873635   PMID:22020132   PMID:22814818   PMID:23110055   PMID:23291589   PMID:23601356   PMID:23608731   PMID:24348007   PMID:24623722   PMID:25007886   PMID:25037231  
PMID:25416956   PMID:26186194   PMID:26989952   PMID:27121161   PMID:28514442   PMID:28675934   PMID:32296183   PMID:32931574   PMID:33405048   PMID:33961781   PMID:36543142  


Genomics

Comparative Map Data
COL8A2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38136,095,239 - 36,125,222 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl136,095,239 - 36,125,222 (-)EnsemblGRCh38hg38GRCh38
GRCh37136,560,840 - 36,590,823 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36136,333,433 - 36,338,437 (-)NCBINCBI36Build 36hg18NCBI36
Build 34136,229,938 - 36,234,943NCBI
Celera134,835,260 - 34,840,268 (-)NCBICelera
Cytogenetic Map1p34.3NCBI
HuRef134,677,988 - 34,682,528 (-)NCBIHuRef
CHM1_1136,677,163 - 36,682,171 (-)NCBICHM1_1
T2T-CHM13v2.0135,958,119 - 35,988,102 (-)NCBIT2T-CHM13v2.0
Col8a2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394126,180,613 - 126,208,123 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4126,180,586 - 126,208,123 (+)EnsemblGRCm39 Ensembl
GRCm384126,286,794 - 126,314,330 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4126,286,793 - 126,314,330 (+)EnsemblGRCm38mm10GRCm38
MGSCv374125,964,038 - 125,991,574 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364125,789,098 - 125,816,634 (+)NCBIMGSCv36mm8
Celera4124,623,374 - 124,651,011 (+)NCBICelera
Cytogenetic Map4D2.2NCBI
cM Map460.29NCBI
Col8a2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85143,870,754 - 143,897,372 (+)NCBIGRCr8
mRatBN7.25138,586,201 - 138,613,627 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5138,585,999 - 138,612,850 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05144,308,527 - 144,335,142 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5144,308,611 - 144,335,172 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05148,075,775 - 148,102,399 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45145,679,681 - 145,684,323 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.15145,667,832 - 145,693,486 (+)NCBI
Celera5137,083,446 - 137,109,740 (+)NCBICelera
Cytogenetic Map5q36NCBI
Col8a2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545214,127,630 - 14,155,212 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545214,127,654 - 14,149,582 (-)NCBIChiLan1.0ChiLan1.0
COL8A2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21190,720,683 - 190,751,550 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11189,842,330 - 189,872,762 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0135,361,336 - 35,391,173 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1136,535,542 - 36,556,413 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl136,537,869 - 36,540,541 (-)Ensemblpanpan1.1panPan2
COL8A2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1156,095,872 - 6,115,538 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl156,095,728 - 6,115,538 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha156,348,926 - 6,358,243 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0156,241,965 - 6,251,306 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl156,238,417 - 6,251,306 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1156,094,902 - 6,104,210 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0156,162,995 - 6,172,284 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0156,177,913 - 6,187,272 (+)NCBIUU_Cfam_GSD_1.0
Col8a2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505852,762,669 - 52,777,739 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647418,589,363 - 18,602,583 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647418,587,451 - 18,602,446 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COL8A2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl692,247,171 - 92,271,529 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1692,246,047 - 92,272,046 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2685,535,810 - 85,541,667 (-)NCBISscrofa10.2Sscrofa10.2susScr3
COL8A2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12096,728,341 - 96,761,495 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2096,756,520 - 96,759,182 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603319,965,194 - 19,999,068 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Col8a2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476419,087,563 - 19,110,593 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476419,088,305 - 19,110,606 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in COL8A2
89 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
NM_005202.4(COL8A2):c.1363C>A (p.Gln455Lys) single nucleotide variant Corneal dystrophy, Fuchs endothelial, 1 [RCV000018685]|Posterior polymorphous corneal dystrophy 2 [RCV000018686] Chr1:36098318 [GRCh38]
Chr1:36563919 [GRCh37]
Chr1:1p34.3
pathogenic
NM_005202.4(COL8A2):c.1349T>G (p.Leu450Trp) single nucleotide variant Corneal dystrophy, Fuchs endothelial, 1 [RCV000018687]|Posterior polymorphous corneal dystrophy 2 [RCV000018688] Chr1:36098332 [GRCh38]
Chr1:36563933 [GRCh37]
Chr1:1p34.3
pathogenic
GRCh38/hg38 1p34.3(chr1:35934217-36821999)x4 copy number gain See cases [RCV000138892] Chr1:35934217..36821999 [GRCh38]
Chr1:36399818..37287600 [GRCh37]
Chr1:36172405..37060187 [NCBI36]
Chr1:1p34.3
likely pathogenic
GRCh38/hg38 1p36.11-34.2(chr1:24381206-41401517)x3 copy number gain See cases [RCV000138891] Chr1:24381206..41401517 [GRCh38]
Chr1:24707696..41886350 [GRCh37]
Chr1:24580283..41658937 [NCBI36]
Chr1:1p36.11-34.2
pathogenic
NM_005202.4(COL8A2):c.1363_1364delinsGT (p.Gln455Val) indel Corneal dystrophy, Fuchs endothelial, 1 [RCV000154184] Chr1:36098317..36098318 [GRCh38]
Chr1:36563918..36563919 [GRCh37]
Chr1:1p34.3
pathogenic
GRCh37/hg19 1p36.12-12(chr1:20608823-120546301)x3 copy number loss not provided [RCV000762767] Chr1:20608823..120546301 [GRCh37]
Chr1:1p36.12-12
likely benign
NM_005202.4(COL8A2):c.1137T>C (p.Gly379=) single nucleotide variant not provided [RCV001546183] Chr1:36098544 [GRCh38]
Chr1:36564145 [GRCh37]
Chr1:1p34.3
benign|likely benign
GRCh37/hg19 1p34.3(chr1:34830287-36945093)x1 copy number loss See cases [RCV000448022] Chr1:34830287..36945093 [GRCh37]
Chr1:1p34.3
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44
pathogenic
NM_005202.4(COL8A2):c.1517C>T (p.Thr506Met) single nucleotide variant Inborn genetic diseases [RCV003248572] Chr1:36098164 [GRCh38]
Chr1:36563765 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.215C>T (p.Pro72Leu) single nucleotide variant Inborn genetic diseases [RCV003251926] Chr1:36099466 [GRCh38]
Chr1:36565067 [GRCh37]
Chr1:1p34.3
uncertain significance
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease dominant intermediate C [RCV000708276] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1
uncertain significance
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44
pathogenic
GRCh37/hg19 1p35.2-34.3(chr1:31562164-37421958)x3 copy number gain not provided [RCV000748949] Chr1:31562164..37421958 [GRCh37]
Chr1:1p35.2-34.3
pathogenic
NM_005202.4(COL8A2):c.639C>T (p.Pro213=) single nucleotide variant not provided [RCV000898613] Chr1:36099042 [GRCh38]
Chr1:36564643 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.807G>A (p.Val269=) single nucleotide variant COL8A2-related condition [RCV003943166]|not provided [RCV000967913] Chr1:36098874 [GRCh38]
Chr1:36564475 [GRCh37]
Chr1:1p34.3
benign|likely benign
NM_005202.4(COL8A2):c.1746C>T (p.Thr582=) single nucleotide variant not provided [RCV000950365] Chr1:36097935 [GRCh38]
Chr1:36563536 [GRCh37]
Chr1:1p34.3
benign|likely benign
GRCh37/hg19 1p36.22-21.1(chr1:103343285-103455144)x3 copy number gain Global developmental delay [RCV000787285] Chr1:103343285..103455144 [GRCh37]
Chr1:1p36.22-21.1
uncertain significance
GRCh37/hg19 1p34.3(chr1:36496921-36829945)x3 copy number gain not provided [RCV000847964] Chr1:36496921..36829945 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1140G>C (p.Glu380Asp) single nucleotide variant Inborn genetic diseases [RCV003271324] Chr1:36098541 [GRCh38]
Chr1:36564142 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1485G>A (p.Gly495=) single nucleotide variant not provided [RCV001616981] Chr1:36098196 [GRCh38]
Chr1:36563797 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.-16-140T>C single nucleotide variant not provided [RCV001621405] Chr1:36100398 [GRCh38]
Chr1:36565999 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.193+186G>A single nucleotide variant not provided [RCV001724496] Chr1:36099864 [GRCh38]
Chr1:36565465 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.*12G>T single nucleotide variant Corneal dystrophy, Fuchs endothelial, 1 [RCV001658354]|Posterior polymorphous corneal dystrophy 2 [RCV001658355]|not provided [RCV001639904] Chr1:36097557 [GRCh38]
Chr1:36563158 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.1005C>G (p.Leu335=) single nucleotide variant COL8A2-related condition [RCV003984000]|not provided [RCV001609428] Chr1:36098676 [GRCh38]
Chr1:36564277 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.105G>A (p.Ala35=) single nucleotide variant not provided [RCV001657073] Chr1:36100138 [GRCh38]
Chr1:36565739 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.193+34C>T single nucleotide variant Corneal dystrophy, Fuchs endothelial, 1 [RCV001661301]|Posterior polymorphous corneal dystrophy 2 [RCV001661302]|not provided [RCV001696243] Chr1:36100016 [GRCh38]
Chr1:36565617 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.194-274A>G single nucleotide variant not provided [RCV001649932] Chr1:36099761 [GRCh38]
Chr1:36565362 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.1758C>T (p.Pro586=) single nucleotide variant not provided [RCV001665913] Chr1:36097923 [GRCh38]
Chr1:36563524 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.1505C>T (p.Thr502Met) single nucleotide variant COL8A2-related condition [RCV003976049]|not provided [RCV001710810] Chr1:36098176 [GRCh38]
Chr1:36563777 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.-16-275T>C single nucleotide variant not provided [RCV001546979] Chr1:36100533 [GRCh38]
Chr1:36566134 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.193+67G>C single nucleotide variant not provided [RCV001644130] Chr1:36099983 [GRCh38]
Chr1:36565584 [GRCh37]
Chr1:1p34.3
benign
NC_000001.10:g.(?_33241563)_(46663513_?)dup duplication Charcot-Marie-Tooth disease, dominant intermediate C [RCV001308684] Chr1:33241563..46663513 [GRCh37]
Chr1:1p35.1-34.1
uncertain significance
NM_005202.4(COL8A2):c.1876G>T (p.Val626Leu) single nucleotide variant not provided [RCV001354072] Chr1:36097805 [GRCh38]
Chr1:36563406 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1301G>A (p.Arg434His) single nucleotide variant not provided [RCV001485177] Chr1:36098380 [GRCh38]
Chr1:36563981 [GRCh37]
Chr1:1p34.3
benign|likely benign
NM_005202.4(COL8A2):c.194-87C>T single nucleotide variant not provided [RCV001618818] Chr1:36099574 [GRCh38]
Chr1:36565175 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.464G>A (p.Arg155Gln) single nucleotide variant not provided [RCV001652393] Chr1:36099217 [GRCh38]
Chr1:36564818 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.*13dup duplication not provided [RCV001797409] Chr1:36097555..36097556 [GRCh38]
Chr1:36563156..36563157 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.1328C>T (p.Ala443Val) single nucleotide variant not provided [RCV001971165] Chr1:36098353 [GRCh38]
Chr1:36563954 [GRCh37]
Chr1:1p34.3
uncertain significance
GRCh37/hg19 1p34.3(chr1:36041366-39112237) copy number loss not specified [RCV002053236] Chr1:36041366..39112237 [GRCh37]
Chr1:1p34.3
uncertain significance
GRCh37/hg19 1p34.3(chr1:35950860-36635695) copy number gain not specified [RCV002053225] Chr1:35950860..36635695 [GRCh37]
Chr1:1p34.3
uncertain significance
GRCh37/hg19 1p35.1-33(chr1:33285582-47891811) copy number gain not specified [RCV002052781] Chr1:33285582..47891811 [GRCh37]
Chr1:1p35.1-33
pathogenic
NM_005202.4(COL8A2):c.1645G>A (p.Gly549Ser) single nucleotide variant Inborn genetic diseases [RCV002545816]|not provided [RCV001888005] Chr1:36098036 [GRCh38]
Chr1:36563637 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1280G>T (p.Gly427Val) single nucleotide variant not provided [RCV001989226] Chr1:36098401 [GRCh38]
Chr1:36564002 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1724C>T (p.Pro575Leu) single nucleotide variant not provided [RCV002078179] Chr1:36097957 [GRCh38]
Chr1:36563558 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.7G>A (p.Gly3Arg) single nucleotide variant not provided [RCV002192949] Chr1:36100236 [GRCh38]
Chr1:36565837 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.194-10T>C single nucleotide variant not provided [RCV002131868] Chr1:36099497 [GRCh38]
Chr1:36565098 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.194-7_194-4del microsatellite COL8A2-related condition [RCV003978745]|not provided [RCV002127358] Chr1:36099491..36099494 [GRCh38]
Chr1:36565092..36565095 [GRCh37]
Chr1:1p34.3
benign|likely benign
NM_005202.4(COL8A2):c.1323A>G (p.Ala441=) single nucleotide variant not provided [RCV002123032] Chr1:36098358 [GRCh38]
Chr1:36563959 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.297A>G (p.Lys99=) single nucleotide variant not provided [RCV002117859] Chr1:36099384 [GRCh38]
Chr1:36564985 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.1699G>A (p.Gly567Ser) single nucleotide variant Inborn genetic diseases [RCV002551280]|not provided [RCV002082777] Chr1:36097982 [GRCh38]
Chr1:36563583 [GRCh37]
Chr1:1p34.3
benign|uncertain significance
NM_005202.4(COL8A2):c.679C>T (p.Pro227Ser) single nucleotide variant not specified [RCV002281764] Chr1:36099002 [GRCh38]
Chr1:36564603 [GRCh37]
Chr1:1p34.3
uncertain significance
GRCh37/hg19 1p34.3(chr1:35104233-37357913)x1 copy number loss not provided [RCV002474552] Chr1:35104233..37357913 [GRCh37]
Chr1:1p34.3
pathogenic
NM_005202.4(COL8A2):c.1589C>A (p.Pro530His) single nucleotide variant Inborn genetic diseases [RCV002754328] Chr1:36098092 [GRCh38]
Chr1:36563693 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1809C>T (p.Ser603=) single nucleotide variant not provided [RCV002947567] Chr1:36097872 [GRCh38]
Chr1:36563473 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.1557_1565del (p.520PPG[3]) deletion not provided [RCV002996025] Chr1:36098116..36098124 [GRCh38]
Chr1:36563717..36563725 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1651G>A (p.Val551Met) single nucleotide variant Inborn genetic diseases [RCV002905771] Chr1:36098030 [GRCh38]
Chr1:36563631 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1580C>A (p.Pro527Gln) single nucleotide variant Inborn genetic diseases [RCV002734512] Chr1:36098101 [GRCh38]
Chr1:36563702 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.262C>T (p.Arg88Trp) single nucleotide variant Inborn genetic diseases [RCV002859101] Chr1:36099419 [GRCh38]
Chr1:36565020 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1660G>A (p.Ala554Thr) single nucleotide variant Inborn genetic diseases [RCV002729280] Chr1:36098021 [GRCh38]
Chr1:36563622 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1586C>A (p.Pro529His) single nucleotide variant Inborn genetic diseases [RCV002707684] Chr1:36098095 [GRCh38]
Chr1:36563696 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.446G>A (p.Arg149Gln) single nucleotide variant not provided [RCV002593088] Chr1:36099235 [GRCh38]
Chr1:36564836 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.22C>T (p.Leu8=) single nucleotide variant COL8A2-related condition [RCV003926560]|not provided [RCV002952693] Chr1:36100221 [GRCh38]
Chr1:36565822 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.104C>T (p.Ala35Val) single nucleotide variant Inborn genetic diseases [RCV002758751] Chr1:36100139 [GRCh38]
Chr1:36565740 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1759G>A (p.Ala587Thr) single nucleotide variant Inborn genetic diseases [RCV002758226] Chr1:36097922 [GRCh38]
Chr1:36563523 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1276A>C (p.Lys426Gln) single nucleotide variant Inborn genetic diseases [RCV002869321] Chr1:36098405 [GRCh38]
Chr1:36564006 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1648G>A (p.Gly550Ser) single nucleotide variant not provided [RCV002781327] Chr1:36098033 [GRCh38]
Chr1:36563634 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.565G>C (p.Glu189Gln) single nucleotide variant not provided [RCV003054672] Chr1:36099116 [GRCh38]
Chr1:36564717 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1114C>T (p.Arg372Cys) single nucleotide variant Inborn genetic diseases [RCV002799118]|not provided [RCV003730283] Chr1:36098567 [GRCh38]
Chr1:36564168 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.424C>T (p.Leu142Phe) single nucleotide variant Inborn genetic diseases [RCV002916353] Chr1:36099257 [GRCh38]
Chr1:36564858 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.71C>T (p.Pro24Leu) single nucleotide variant Inborn genetic diseases [RCV002983895] Chr1:36100172 [GRCh38]
Chr1:36565773 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.427C>T (p.Arg143Trp) single nucleotide variant Inborn genetic diseases [RCV003003493] Chr1:36099254 [GRCh38]
Chr1:36564855 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1249C>T (p.His417Tyr) single nucleotide variant Inborn genetic diseases [RCV002763487] Chr1:36098432 [GRCh38]
Chr1:36564033 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1553C>T (p.Thr518Met) single nucleotide variant Inborn genetic diseases [RCV002891283] Chr1:36098128 [GRCh38]
Chr1:36563729 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.835G>A (p.Gly279Ser) single nucleotide variant Inborn genetic diseases [RCV002699113] Chr1:36098846 [GRCh38]
Chr1:36564447 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.2053C>T (p.Leu685Phe) single nucleotide variant not provided [RCV002900608] Chr1:36097628 [GRCh38]
Chr1:36563229 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.968C>T (p.Pro323Leu) single nucleotide variant Inborn genetic diseases [RCV002813832] Chr1:36098713 [GRCh38]
Chr1:36564314 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.629T>G (p.Val210Gly) single nucleotide variant Inborn genetic diseases [RCV002722868] Chr1:36099052 [GRCh38]
Chr1:36564653 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1286C>A (p.Pro429Gln) single nucleotide variant Inborn genetic diseases [RCV003277670] Chr1:36098395 [GRCh38]
Chr1:36563996 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.*90C>A single nucleotide variant not provided [RCV003218995] Chr1:36097479 [GRCh38]
Chr1:36563080 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.511A>G (p.Ile171Val) single nucleotide variant Inborn genetic diseases [RCV003203321] Chr1:36099170 [GRCh38]
Chr1:36564771 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.2003G>A (p.Arg668Gln) single nucleotide variant Inborn genetic diseases [RCV003203527] Chr1:36097678 [GRCh38]
Chr1:36563279 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.130A>G (p.Ile44Val) single nucleotide variant Inborn genetic diseases [RCV003287125] Chr1:36100113 [GRCh38]
Chr1:36565714 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.1487G>A (p.Arg496Lys) single nucleotide variant Inborn genetic diseases [RCV003359041] Chr1:36098194 [GRCh38]
Chr1:36563795 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.1165G>A (p.Val389Met) single nucleotide variant Inborn genetic diseases [RCV003376371] Chr1:36098516 [GRCh38]
Chr1:36564117 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1961G>A (p.Gly654Asp) single nucleotide variant Inborn genetic diseases [RCV003366531] Chr1:36097720 [GRCh38]
Chr1:36563321 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.281dup (p.Gly95fs) duplication COL8A2-related condition [RCV003416690] Chr1:36099399..36099400 [GRCh38]
Chr1:36565000..36565001 [GRCh37]
Chr1:1p34.3
uncertain significance
Single allele inversion Bilateral polymicrogyria [RCV003459046] Chr1:33246132..61045156 [GRCh38]
Chr1:1p35.1-31.3
likely pathogenic
NM_005202.4(COL8A2):c.1151G>A (p.Gly384Glu) single nucleotide variant not provided [RCV003406343] Chr1:36098530 [GRCh38]
Chr1:36564131 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.402C>T (p.Val134=) single nucleotide variant not provided [RCV003546397] Chr1:36099279 [GRCh38]
Chr1:36564880 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.660G>A (p.Gly220=) single nucleotide variant not provided [RCV003693178] Chr1:36099021 [GRCh38]
Chr1:36564622 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.1084C>T (p.Leu362Phe) single nucleotide variant not provided [RCV003659176] Chr1:36098597 [GRCh38]
Chr1:36564198 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.71C>G (p.Pro24Arg) single nucleotide variant not provided [RCV003549594] Chr1:36100172 [GRCh38]
Chr1:36565773 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.129C>T (p.Tyr43=) single nucleotide variant not provided [RCV003561448] Chr1:36100114 [GRCh38]
Chr1:36565715 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.1882G>A (p.Val628Ile) single nucleotide variant not provided [RCV003548735] Chr1:36097799 [GRCh38]
Chr1:36563400 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.90C>T (p.Gly30=) single nucleotide variant not provided [RCV003725612] Chr1:36100153 [GRCh38]
Chr1:36565754 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.1802G>C (p.Gly601Ala) single nucleotide variant not provided [RCV003724724] Chr1:36097879 [GRCh38]
Chr1:36563480 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1836C>T (p.Phe612=) single nucleotide variant not provided [RCV003833126] Chr1:36097845 [GRCh38]
Chr1:36563446 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.743del (p.Pro248fs) deletion not provided [RCV003553842] Chr1:36098938 [GRCh38]
Chr1:36564539 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.*3C>T single nucleotide variant COL8A2-related condition [RCV003939387] Chr1:36097566 [GRCh38]
Chr1:36563167 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.1156C>A (p.Pro386Thr) single nucleotide variant not provided [RCV003726959] Chr1:36098525 [GRCh38]
Chr1:36564126 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.2095T>C (p.Leu699=) single nucleotide variant not provided [RCV003555441] Chr1:36097586 [GRCh38]
Chr1:36563187 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.1702G>A (p.Glu568Lys) single nucleotide variant not provided [RCV003845133] Chr1:36097979 [GRCh38]
Chr1:36563580 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1057C>T (p.Pro353Ser) single nucleotide variant not provided [RCV003568261] Chr1:36098624 [GRCh38]
Chr1:36564225 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.96C>T (p.Ala32=) single nucleotide variant not provided [RCV003556622] Chr1:36100147 [GRCh38]
Chr1:36565748 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.1662C>T (p.Ala554=) single nucleotide variant COL8A2-related condition [RCV003914008] Chr1:36098019 [GRCh38]
Chr1:36563620 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.30GCT[6] (p.Leu16_Val17insLeu) microsatellite COL8A2-related condition [RCV003914361] Chr1:36100198..36100199 [GRCh38]
Chr1:36565799..36565800 [GRCh37]
Chr1:1p34.3
benign
NM_005202.4(COL8A2):c.*5C>T single nucleotide variant COL8A2-related condition [RCV003919630] Chr1:36097564 [GRCh38]
Chr1:36563165 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.1069G>C (p.Gly357Arg) single nucleotide variant COL8A2-related condition [RCV003906927] Chr1:36098612 [GRCh38]
Chr1:36564213 [GRCh37]
Chr1:1p34.3
likely benign
NM_005202.4(COL8A2):c.1004T>C (p.Leu335Pro) single nucleotide variant Inborn genetic diseases [RCV003361639] Chr1:36098677 [GRCh38]
Chr1:36564278 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1223C>T (p.Pro408Leu) single nucleotide variant Inborn genetic diseases [RCV003307253] Chr1:36098458 [GRCh38]
Chr1:36564059 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.605G>A (p.Arg202Gln) single nucleotide variant Inborn genetic diseases [RCV003304090] Chr1:36099076 [GRCh38]
Chr1:36564677 [GRCh37]
Chr1:1p34.3
uncertain significance
NM_005202.4(COL8A2):c.1576C>T (p.Pro526Ser) single nucleotide variant Inborn genetic diseases [RCV003356426] Chr1:36098105 [GRCh38]
Chr1:36563706 [GRCh37]
Chr1:1p34.3
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3585
Count of miRNA genes:906
Interacting mature miRNAs:1085
Transcripts:ENST00000303143, ENST00000397799, ENST00000481785
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
COL8A2_1661  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37136,560,993 - 36,561,731UniSTSGRCh37
Build 36136,333,580 - 36,334,318RGDNCBI36
Celera134,835,411 - 34,836,149RGD
HuRef134,678,139 - 34,678,877UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High 1
Medium 1184 1350 541 105 209 7 1872 818 973 44 457 644 104 1 288 1509 1
Low 1148 1144 911 268 850 203 1895 647 1935 256 954 852 70 914 735 3 2
Below cutoff 43 490 262 242 603 245 582 726 822 111 34 89 1 2 544

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_016245 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001294347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_005202 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_005270477 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC114484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI084614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074129 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL138787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096295 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096296 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC096297 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099645 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY025990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC130911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC130912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC130913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC130914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC130915 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC130916 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC130917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KC130918 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M60832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000303143   ⟹   ENSP00000305913
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,095,241 - 36,100,249 (-)Ensembl
RefSeq Acc Id: ENST00000397799   ⟹   ENSP00000380901
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,095,239 - 36,125,222 (-)Ensembl
RefSeq Acc Id: ENST00000481785   ⟹   ENSP00000436433
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl136,097,507 - 36,100,249 (-)Ensembl
RefSeq Acc Id: NM_001294347   ⟹   NP_001281276
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,095,239 - 36,125,222 (-)NCBI
CHM1_1136,677,158 - 36,707,042 (-)NCBI
T2T-CHM13v2.0135,958,119 - 35,988,102 (-)NCBI
Sequence:
RefSeq Acc Id: NM_005202   ⟹   NP_005193
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,095,239 - 36,125,222 (-)NCBI
GRCh37136,560,840 - 36,591,305 (-)NCBI
Build 36136,333,433 - 36,338,437 (-)NCBI Archive
HuRef134,677,988 - 34,682,528 (-)ENTREZGENE
CHM1_1136,677,158 - 36,707,042 (-)NCBI
T2T-CHM13v2.0135,958,119 - 35,988,102 (-)NCBI
Sequence:
RefSeq Acc Id: NP_005193   ⟸   NM_005202
- Peptide Label: isoform 1 precursor
- UniProtKB: Q5JV31 (UniProtKB/Swiss-Prot),   Q8TEJ5 (UniProtKB/Swiss-Prot),   P25067 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001281276   ⟸   NM_001294347
- Peptide Label: isoform 2
- UniProtKB: E9PP49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSP00000436433   ⟸   ENST00000481785
RefSeq Acc Id: ENSP00000305913   ⟸   ENST00000303143
RefSeq Acc Id: ENSP00000380901   ⟸   ENST00000397799
Protein Domains
C1q

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P25067-F1-model_v2 AlphaFold P25067 1-703 view protein structure

Promoters
RGD ID:6854970
Promoter ID:EPDNEW_H650
Type:multiple initiation site
Name:COL8A2_2
Description:collagen type VIII alpha 2 chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H651  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,100,214 - 36,100,274EPDNEW
RGD ID:6854972
Promoter ID:EPDNEW_H651
Type:initiation region
Name:COL8A2_1
Description:collagen type VIII alpha 2 chain
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H650  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38136,125,740 - 36,125,800EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:2216 AgrOrtholog
COSMIC COL8A2 COSMIC
Ensembl Genes ENSG00000171812 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000303143.9 UniProtKB/Swiss-Prot
  ENST00000397799 ENTREZGENE
  ENST00000397799.2 UniProtKB/Swiss-Prot
  ENST00000481785 ENTREZGENE
  ENST00000481785.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000171812 GTEx
HGNC ID HGNC:2216 ENTREZGENE
Human Proteome Map COL8A2 Human Proteome Map
InterPro C1q_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:1296 UniProtKB/Swiss-Prot
NCBI Gene 1296 ENTREZGENE
OMIM 120252 OMIM
PANTHER C1Q DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  COLLAGEN ALPHA UniProtKB/Swiss-Prot
  COLLAGEN ALPHA-1(X) CHAIN UniProtKB/TrEMBL
  COLLAGEN ALPHA-2(VIII) CHAIN UniProtKB/Swiss-Prot
  EMI DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER UniProtKB/TrEMBL
Pfam C1q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Collagen UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA26732 PharmGKB
PRINTS COMPLEMNTC1Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART C1Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt CO8A2_HUMAN UniProtKB/Swiss-Prot
  E9PP49 ENTREZGENE, UniProtKB/TrEMBL
  P25067 ENTREZGENE
  Q4VAP9_HUMAN UniProtKB/TrEMBL
  Q4VAQ0_HUMAN UniProtKB/TrEMBL
  Q4VAQ1_HUMAN UniProtKB/TrEMBL
  Q5JV31 ENTREZGENE
  Q8TEJ5 ENTREZGENE
  R9UH34_HUMAN UniProtKB/TrEMBL
  R9UH47_HUMAN UniProtKB/TrEMBL
  R9UJ55_HUMAN UniProtKB/TrEMBL
UniProt Secondary Q5JV31 UniProtKB/Swiss-Prot
  Q8TEJ5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-07-26 COL8A2  collagen type VIII alpha 2 chain    collagen type VIII alpha 2  Symbol and/or name change 5135510 APPROVED
2016-01-26 COL8A2  collagen type VIII alpha 2    collagen, type VIII, alpha 2  Symbol and/or name change 5135510 APPROVED