Hoxa10 (homeobox A10) - Rat Genome Database

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Gene: Hoxa10 (homeobox A10) Rattus norvegicus
Analyze
Symbol: Hoxa10 (Ensembl: LOC100911668)
Name: homeobox A10 (Ensembl:homeobox protein Hox-A10-like)
RGD ID: 9410935
Description: Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and histone deacetylase binding activity. Involved in prostate gland development; response to estrogen; and response to testosterone. Predicted to be located in cytoplasm and nucleoplasm. Predicted to be part of transcription regulator complex. Orthologous to human HOXA10 (homeobox A10); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; all-trans-retinoic acid.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: homeobox protein Hox-A10; homeobox protein Hox-A10-like; LOC100911668
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,662,204 - 82,671,490 (-)NCBIGRCr8
mRatBN7.2481,331,591 - 81,340,878 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,331,591 - 81,340,919 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,553,401 - 86,562,690 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0482,328,792 - 82,338,081 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,755,903 - 80,765,183 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0482,285,940 - 82,295,892 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,200,145 - 82,209,933 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,285,528 - 82,295,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,866,976 - 146,876,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera476,222,210 - 76,229,619 (-)NCBICelera
Cytogenetic Map4q24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Posterior Hox gene expression and differential androgen regulation in the developing and adult rat prostate lobes. Huang L, etal., Endocrinology. 2007 Mar;148(3):1235-45. Epub 2006 Nov 30.
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Developmental exposure to Bisphenol a impairs the uterine response to ovarian steroids in the adult. Varayoud J, etal., Endocrinology. 2008 Nov;149(11):5848-60. doi: 10.1210/en.2008-0651. Epub 2008 Jul 24.
Additional References at PubMed
PMID:9343407   PMID:11900456   PMID:12869760   PMID:15213244   PMID:21471217   PMID:23760953   PMID:37062956  


Genomics

Comparative Map Data
Hoxa10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8482,662,204 - 82,671,490 (-)NCBIGRCr8
mRatBN7.2481,331,591 - 81,340,878 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl481,331,591 - 81,340,919 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx486,553,401 - 86,562,690 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0482,328,792 - 82,338,081 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0480,755,903 - 80,765,183 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0482,285,940 - 82,295,892 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,200,145 - 82,209,933 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl482,285,528 - 82,295,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04146,866,976 - 146,876,908 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera476,222,210 - 76,229,619 (-)NCBICelera
Cytogenetic Map4q24NCBI
HOXA10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38727,170,605 - 27,179,861 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl727,170,605 - 27,180,261 (-)EnsemblGRCh38hg38GRCh38
GRCh37727,210,224 - 27,219,480 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36727,176,735 - 27,186,368 (-)NCBINCBI36Build 36hg18NCBI36
Build 34726,983,450 - 26,993,083NCBI
Celera727,199,149 - 27,208,815 (-)NCBICelera
Cytogenetic Map7p15.2NCBI
HuRef727,090,631 - 27,100,441 (-)NCBIHuRef
CHM1_1727,209,927 - 27,219,601 (-)NCBICHM1_1
T2T-CHM13v2.0727,306,614 - 27,315,870 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2727,261,395 - 27,271,065 (-)NCBI
Hoxa10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39652,208,177 - 52,217,658 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl652,208,177 - 52,217,834 (-)EnsemblGRCm39 Ensembl
GRCm38652,231,197 - 52,240,854 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl652,231,197 - 52,240,854 (-)EnsemblGRCm38mm10GRCm38
MGSCv37652,181,196 - 52,190,853 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36652,160,780 - 52,164,522 (-)NCBIMGSCv36mm8
Celera652,752,835 - 52,762,492 (-)NCBICelera
Cytogenetic Map6B3NCBI
cM Map625.4NCBI
Hoxa10
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541028,864,785 - 28,874,454 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541028,864,785 - 28,874,454 (-)NCBIChiLan1.0ChiLan1.0
HOXA10
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2631,999,836 - 32,007,867 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1780,324,561 - 80,328,275 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0727,815,112 - 27,818,829 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1727,414,527 - 27,418,240 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl727,415,833 - 27,423,580 (-)Ensemblpanpan1.1panPan2
HOXA10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11440,346,462 - 40,348,900 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1440,346,462 - 40,354,396 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1439,777,320 - 39,779,752 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01440,285,119 - 40,287,557 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1440,283,823 - 40,287,557 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11440,399,087 - 40,401,518 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01440,084,156 - 40,086,597 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01440,442,784 - 40,445,216 (-)NCBIUU_Cfam_GSD_1.0
Hoxa10
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511884,586,494 - 84,594,220 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364783,798,679 - 3,802,007 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HOXA10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1845,393,885 - 45,403,257 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11845,393,525 - 45,403,259 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21850,027,131 - 50,036,446 (+)NCBISscrofa10.2Sscrofa10.2susScr3
HOXA10
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12131,189,240 - 31,198,244 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604273,535,593 - 73,544,577 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Hoxa10
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247393,425,468 - 3,433,967 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247393,425,468 - 3,435,218 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Hoxa10
24 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1578657Bss12Bone structure and strength QTL 128.9femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)460220938105220938Rat
1578658Bss13Bone structure and strength QTL 138femur strength trait (VT:0010010)femoral neck polar moment of inertia (CMO:0001670)460220938105220938Rat
2300179Bmd50Bone mineral density QTL 505.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)460928534105928534Rat
1549843Bw53Body weight QTL 530.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658103194791Rat
1549839Bw52Body weight QTL 520.0001body mass (VT:0001259)body weight gain (CMO:0000420)461697658115089733Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
6478743Anxrr40Anxiety related response QTL 400.83076defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478772Anxrr49Anxiety related response QTL 490.15488defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
6478684Anxrr30Anxiety related response QTL 300.00087defecation behavior trait (VT:0010462)defecation rate (CMO:0000998)462753847107753847Rat
631651Bp124Blood pressure QTL 1243arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462879517107879517Rat
7394826Bw126Body weight QTL 1260.002body mass (VT:0001259)body weight gain (CMO:0000420)46293326987483707Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)46293350882490359Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in mean arterial blood pressure (CMO:0002035)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)percent change in systolic blood pressure (CMO:0000747)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in pulse pressure (CMO:0001882)462933508114921294Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)462933508114921294Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
2312569Pur19Proteinuria QTL 193.40.001urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)46588210796130297Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)470808386115808386Rat
634344Hcar7Hepatocarcinoma resistance QTL 77.8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)470808386115808386Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
724522Bp146Blood pressure QTL 1462.20.0021arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)473630210118630210Rat
2302051Pia28Pristane induced arthritis QTL 285.30.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)473630210118630210Rat
70167Bw22Body weight QTL 223.1body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
1357342Bw40Body weight QTL 400.001body mass (VT:0001259)body weight (CMO:0000012)476647384117676292Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631556Bp135Blood pressure QTL 1350.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)478881294117676292Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)47888281783007655Rat
2317586Eae25Experimental allergic encephalomyelitis QTL 259.300000190734863nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis duration (CMO:0001424)47888281783007655Rat
61364Iddm2Insulin dependent diabetes mellitus QTL 2blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)478885890102684881Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system integumental system musculoskeletal system renal system reproductive system appendage
High
Medium
Low 21 10
Below cutoff 2 8 12 44 31 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000036394   ⟹   ENSRNOP00000037877
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl481,331,635 - 81,335,304 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081824   ⟹   ENSRNOP00000072342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl481,332,580 - 81,333,528 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091106   ⟹   ENSRNOP00000075538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl481,331,591 - 81,340,919 (-)Ensembl
RefSeq Acc Id: NM_001402287   ⟹   NP_001389216
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8482,662,204 - 82,665,922 (-)NCBI
mRatBN7.2481,331,591 - 81,335,309 (-)NCBI
RefSeq Acc Id: NM_001402288   ⟹   NP_001389217
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8482,662,204 - 82,671,490 (-)NCBI
mRatBN7.2481,331,591 - 81,340,878 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001389216 (Get FASTA)   NCBI Sequence Viewer  
  NP_001389217 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000037877
  ENSRNOP00000037877.4
  ENSRNOP00000072342.1
  ENSRNOP00000075538
  ENSRNOP00000075538.1
Reference Protein Sequences
RefSeq Acc Id: ENSRNOP00000072342   ⟸   ENSRNOT00000081824
RefSeq Acc Id: ENSRNOP00000075538   ⟸   ENSRNOT00000091106
RefSeq Acc Id: ENSRNOP00000037877   ⟸   ENSRNOT00000036394
RefSeq Acc Id: NP_001389217   ⟸   NM_001402288
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JWY7 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001389216   ⟸   NM_001402287
- Peptide Label: isoform 1
- UniProtKB: D3ZHM5 (UniProtKB/TrEMBL),   M0RDQ9 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693054
Promoter ID:EPDNEW_R3577
Type:single initiation site
Name:LOC100911668_3
Description:homeobox protein Hox-A10-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3578  EPDNEW_R3579  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0482,289,658 - 82,289,718EPDNEW
RGD ID:13693055
Promoter ID:EPDNEW_R3578
Type:multiple initiation site
Name:LOC100911668_2
Description:homeobox protein Hox-A10-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3577  EPDNEW_R3579  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0482,295,254 - 82,295,314EPDNEW
RGD ID:13693056
Promoter ID:EPDNEW_R3579
Type:single initiation site
Name:LOC100911668_1
Description:homeobox protein Hox-A10-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3577  EPDNEW_R3578  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0482,295,457 - 82,295,517EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:9410935 AgrOrtholog
Ensembl Genes ENSRNOG00000050252 Ensembl
  ENSRNOG00000057650 Ensembl
  ENSRNOG00000065199 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036394 ENTREZGENE
  ENSRNOT00000036394.7 UniProtKB/TrEMBL
  ENSRNOT00000081824.2 UniProtKB/TrEMBL
  ENSRNOT00000091106 ENTREZGENE
  ENSRNOT00000091106.2 UniProtKB/TrEMBL
Gene3D-CATH Homeodomain-like UniProtKB/TrEMBL
InterPro Homeobox_CS UniProtKB/TrEMBL
  Homeobox_dom UniProtKB/TrEMBL
  Homeobox_metazoa UniProtKB/TrEMBL
  Homeodomain-like UniProtKB/TrEMBL
  HXA10/ABDB-like UniProtKB/TrEMBL
KEGG Report rno:100911668 UniProtKB/TrEMBL
NCBI Gene Hoxa10 ENTREZGENE
PANTHER HOMEOBOX PROTEIN HOX-A10 UniProtKB/TrEMBL
  PTHR45874 UniProtKB/TrEMBL
Pfam Homeobox UniProtKB/TrEMBL
PhenoGen Hoxa10 PhenoGen
PRINTS HOMEOBOX UniProtKB/TrEMBL
PROSITE HOMEOBOX_1 UniProtKB/TrEMBL
  HOMEOBOX_2 UniProtKB/TrEMBL
  PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000050252 RatGTEx
  ENSRNOG00000057650 RatGTEx
  ENSRNOG00000065199 RatGTEx
SMART HOX UniProtKB/TrEMBL
Superfamily-SCOP SSF46689 UniProtKB/TrEMBL
UniProt A0A0G2JWY7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K2R3_RAT UniProtKB/TrEMBL
  D3ZHM5 ENTREZGENE, UniProtKB/TrEMBL
  M0RDQ9 ENTREZGENE
UniProt Secondary M0RDQ9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-04-10 Hoxa10  homeobox A10  LOC100911668  homeobox protein Hox-A10-like  Data merged from RGD:6491746 737654 PROVISIONAL
2021-03-09 LOC100911668  homeobox protein Hox-A10-like  LOC100912608  homeobox protein Hox-A10-like  Data merged from RGD:6485971 737654 PROVISIONAL
2014-08-25 Hoxa10  homeobox A10      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100912608  homeobox protein Hox-A10-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100911668  homeobox protein Hox-A10-like      Symbol and Name status set to provisional 70820 PROVISIONAL