Trpc2 (transient receptor potential cation channel subfamily C member 2) - Rat Genome Database

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Gene: Trpc2 (transient receptor potential cation channel subfamily C member 2) Rattus norvegicus
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Symbol: Trpc2
Name: transient receptor potential cation channel subfamily C member 2
RGD ID: 628819
Description: Predicted to enable diacylglycerol binding activity; inositol 1,4,5 trisphosphate binding activity; and store-operated calcium channel activity. Predicted to be involved in calcium ion transmembrane transport; regulation of cytosolic calcium ion concentration; and single fertilization. Predicted to act upstream of or within several processes, including female courtship behavior; inter-male aggressive behavior; and mating behavior, sex discrimination. Predicted to be located in dendrite membrane and endomembrane system. Predicted to be part of cation channel complex. Predicted to be active in plasma membrane. Orthologous to human TRPC2 (transient receptor potential cation channel subfamily C member 2 (pseudogene)); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; ammonium chloride; amphetamine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: MGC189397; rTrp2; short transient receptor potential channel 2; transient receptor potential cation channel, subfamily C, member 2; transient receptor potential cation channel, subfamily C, member 2, pseudogene; transient receptor protein 2; TRP-2; Trrp2
RGD Orthologs
Human
Mouse
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,871,991 - 165,885,339 (+)NCBIGRCr8
mRatBN7.21156,460,009 - 156,473,039 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,440,305 - 156,473,073 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,437,596 - 164,450,988 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,617,684 - 171,631,076 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,494,996 - 164,508,394 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,180,103 - 167,192,456 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,169,442 - 167,192,801 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,368,155 - 173,381,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,542,801 - 159,576,294 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11159,642,649 - 159,655,999 (+)NCBI
Celera1154,528,993 - 154,541,346 (+)NCBICelera
Cytogenetic Map1q32NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. TRP2: a candidate transduction channel for mammalian pheromone sensory signaling. Liman ER, etal., Proc Natl Acad Sci U S A 1999 May 11;96(10):5791-6.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10051594   PMID:10998353   PMID:11331878   PMID:11823606   PMID:11972034   PMID:12477932   PMID:12601176   PMID:12826614   PMID:14505576   PMID:14642279   PMID:14699131   PMID:15632090  
PMID:17676034   PMID:20492691   PMID:23015753   PMID:23018590   PMID:23144458   PMID:23578584   PMID:23637329   PMID:24089208  


Genomics

Comparative Map Data
Trpc2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,871,991 - 165,885,339 (+)NCBIGRCr8
mRatBN7.21156,460,009 - 156,473,039 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,440,305 - 156,473,073 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,437,596 - 164,450,988 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,617,684 - 171,631,076 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,494,996 - 164,508,394 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,180,103 - 167,192,456 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,169,442 - 167,192,801 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,368,155 - 173,381,696 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,542,801 - 159,576,294 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11159,642,649 - 159,655,999 (+)NCBI
Celera1154,528,993 - 154,541,346 (+)NCBICelera
Cytogenetic Map1q32NCBI
TRPC2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38113,626,460 - 3,637,559 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl113,616,679 - 3,637,549 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl113,626,438 - 3,637,677 (+)EnsemblGRCh38hg38GRCh38
GRCh37113,647,690 - 3,658,789 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36113,604,290 - 3,615,365 (+)NCBINCBI36Build 36hg18NCBI36
Build 34113,604,289 - 3,615,365NCBI
Celera113,659,826 - 3,663,093 (+)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef113,384,984 - 3,396,073 (+)NCBIHuRef
CHM1_1113,646,765 - 3,657,866 (+)NCBICHM1_1
T2T-CHM13v2.0113,671,928 - 3,682,997 (+)NCBIT2T-CHM13v2.0
Trpc2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,732,323 - 101,746,071 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7101,732,323 - 101,745,603 (+)EnsemblGRCm39 Ensembl
GRCm387102,083,116 - 102,096,864 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7102,083,116 - 102,096,396 (+)EnsemblGRCm38mm10GRCm38
MGSCv377109,214,227 - 109,244,930 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367101,949,701 - 101,970,155 (+)NCBIMGSCv36mm8
Celera7102,440,894 - 102,463,475 (+)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.71NCBI

Variants

.
Variants in Trpc2
50 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1056
Count of miRNA genes:297
Interacting mature miRNAs:387
Transcripts:ENSRNOT00000027358, ENSRNOT00000045726, ENSRNOT00000048172
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4889419Cstrr2Cold stress response QTL 20.05urine catecholamine amount (VT:0010502)absolute change in urine norepinephrine level (CMO:0001634)1155866514158592016Rat
61442Strs1Sensitivity to stroke QTL 17.4cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)1121767634166767634Rat
1578778Pur4Proteinuria QTL 43.30.003urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)1150700247252085048Rat
1354646Kidm18Kidney mass QTL 185.7kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512256448636Rat
1578780Cm52Cardiac mass QTL 523.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)181591954219808434Rat
1578654Bss10Bone structure and strength QTL 104femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)149393172159356837Rat
2302378Insul11Insulin level QTL 113.25blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1144267353251128347Rat
1598866Bp287Blood pressure QTL 2875.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1578770Stresp23Stress response QTL 23kidney sympathetic nerve activity (VT:0004050)stimulated renal sympathetic nerve activity to basal renal sympathetic nerve activity ratio (CMO:0001786)1123350408182418476Rat
70160Bw18Body weight QTL 185.7body mass (VT:0001259)body weight (CMO:0000012)1144267353196383668Rat
7794788Mcs32Mammary carcinoma susceptibility QTL 322.61mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)1115540693238914717Rat
631199Cm23Cardiac mass QTL 234.60.0004heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1115585465172949803Rat
1354636Lmblg1Limb length QTL 16.4tibia length (VT:0004357)tibia length (CMO:0000450)1151162512201278233Rat
1598850Bp297Blood pressure QTL 2972.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121006655166006655Rat
1549837Hcar15Hepatocarcinoma resistance QTL 150.05liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1153136852260522016Rat
152025235Bw194Body weight QTL 1944.86body mass (VT:0001259)1123556856242907031Rat
1598853Memor3Memory QTL 34.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)1143506580212458660Rat
1354634Kidm12Kidney mass QTL 123.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)1151162512201278233Rat
4889428Stresp24Stress response QTL 240.05heart pumping trait (VT:2000009)absolute change in electrocardiographic low frequency R-R spectral component to high frequency R-R spectral component ratio (CMO:0002162)1155866514200866514Rat
1578759Uae30Urinary albumin excretion QTL 303.30.003urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)1150700247252085048Rat
61343Bp28Blood pressure QTL 28arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1151646613196646613Rat
152025232Bw192Body weight QTL 1923.93body mass (VT:0001259)1117917486196963478Rat
724521Uae1Urinary albumin excretion QTL 13.80.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)190508614173018436Rat
1358902Bw47Body weight QTL 471.67body mass (VT:0001259)body weight (CMO:0000012)190508614180359386Rat
61348Bp30Blood pressure QTL 302.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144017057197814409Rat
2303622Vencon6Ventilatory control QTL 60.001respiration trait (VT:0001943)respiration rate (CMO:0000289)1154561505199561505Rat
8655649Arrd1Age-related retinal degeneration QTL 14.89retinal layer morphology trait (VT:0003727)percentage of study population developing retinopathy during a period of time (CMO:0002453)1100357752183970443Rat
7771612Cm80Cardiac mass QTL 808.4heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)1149448574221264292Rat
631202Gluco13Glucose level QTL 130.0001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1131763437159756369Rat
731168Bp154Blood pressure QTL 1543.4arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194642644214537671Rat
631205Bp196Blood pressure QTL 19640.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118944897199050459Rat
1300158Bp173Blood pressure QTL 1733.48arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)1115540693185145286Rat
631206Niddm40Non-insulin dependent diabetes mellitus QTL 40blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1136745990163747690Rat
737828Hcas3Hepatocarcinoma susceptibility QTL 34.9liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)1144267353222987745Rat
1331749Hrtrt11Heart rate QTL 112.973heart pumping trait (VT:2000009)heart rate (CMO:0000002)194494440198211706Rat
1354661Bw33Body weight QTL 335.2body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
1358886Bp260Blood pressure QTL 2603.67arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1151162766225824951Rat
1331751Bp199Blood pressure QTL 1993.60022arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)194494440181830018Rat
9685799Bp375Blood pressure QTL 375arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
2293140Bp313Blood pressure QTL 313arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1121833674166833674Rat
724531Uae5Urinary albumin excretion QTL 54urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)1150700142252085212Rat
9685802Bp376Blood pressure QTL 376arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1126540680171540680Rat
1641895Bp298Blood pressure QTL 298arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1123350408182418476Rat
70209Niddm23Non-insulin dependent diabetes mellitus QTL 232.82blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)194494440198324465Rat
634315Niddm45Non-insulin dependent diabetes mellitus QTL 457.16blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)1144267916172949660Rat
634314Niddm44Non-insulin dependent diabetes mellitus QTL 44blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)149393289199050459Rat
61379Bp44Blood pressure QTL 4419.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1144267916174133260Rat
1331793Bp200Blood pressure QTL 2003.71601arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)194494440172949803Rat
2313060Bss71Bone structure and strength QTL 712.60.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)1118944747163944747Rat
6893347Bw98Body weight QTL 980.20.53body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354591Cm36Cardiac mass QTL 364.1heart left ventricle mass (VT:0007031)calculated heart weight (CMO:0000073)1102813953201278233Rat
724550Thym3Thymus enlargement QTL 37.820.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
71118Thym1Thymus enlargement QTL 110.170.001thymus mass (VT:0004954)thymus weight to body weight ratio (CMO:0000612)1136829932181829932Rat
7421630Bp362Blood pressure QTL 3620.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1118608292241799120Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132356093162846471Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)132737458199368955Rat
631519Pia11Pristane induced arthritis QTL 115.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1136830018181830018Rat
6893361Bw104Body weight QTL 1040.590.27body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
738006Anxrr14Anxiety related response QTL 1440.00035locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
1558645Bw55Body weight QTL 553.20.004body mass (VT:0001259)body weight (CMO:0000012)1133680936178680936Rat
1354615Cm32Cardiac mass QTL 325.2heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)1102813953201278233Rat
1582204Livw1Liver weight QTL 13.60.0003liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)1155422851172949803Rat
634348Bp138Blood pressure QTL 138arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501168883176Rat
1354610Bw34Body weight QTL 344.1body mass (VT:0001259)body weight (CMO:0000012)1151162512256448636Rat
738028Anxrr12Anxiety related response QTL 124.90.00001locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1130636910175636910Rat
1354620Kidm19Kidney mass QTL 194kidney mass (VT:0002707)calculated kidney weight (CMO:0000160)1151162512201278233Rat
8693608Alc24Alcohol consumption QTL 242.30.74drinking behavior trait (VT:0001422)calculated ethanol drink intake rate (CMO:0001615)1150452391168228760Rat
631654Bp107Blood pressure QTL 107arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1125611501170611501Rat
631544Bp84Blood pressure QTL 845.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350408181759564Rat
152025212Bw190Body weight QTL 1905.7body mass (VT:0001259)1123556856196963478Rat
631549Bp89Blood pressure QTL 895.7arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1123350581201284552Rat
1358189Cstrr1Cold stress response QTL 10.0001catecholamine amount (VT:0010543)urine norepinephrine level (CMO:0001629)1123350408182418476Rat
1354606Bp246Blood pressure QTL 2463.6arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)1102813953218753816Rat
1354602Bw35Body weight QTL 3512.2body mass (VT:0001259)body weight (CMO:0000012)1151162512201278233Rat

Markers in Region
RH130299  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,460,369 - 156,460,555 (+)MAPPERmRatBN7.2
Rnor_6.01167,179,813 - 167,179,998NCBIRnor6.0
Rnor_5.01173,368,708 - 173,368,893UniSTSRnor5.0
RGSC_v3.41159,563,994 - 159,564,179UniSTSRGSC3.4
Celera1154,528,703 - 154,528,888UniSTS
RH 3.4 Map11278.3UniSTS
Cytogenetic Map1q32UniSTS
RH133514  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,473,502 - 156,473,691 (+)MAPPERmRatBN7.2
Rnor_6.01167,192,946 - 167,193,134NCBIRnor6.0
Rnor_5.01173,381,841 - 173,382,029UniSTSRnor5.0
RGSC_v3.41159,577,127 - 159,577,315UniSTSRGSC3.4
Celera1154,541,836 - 154,542,024UniSTS
RH 3.4 Map11285.2UniSTS
Cytogenetic Map1q32UniSTS
RH139162  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,454,993 - 156,455,124 (+)MAPPERmRatBN7.2
Rnor_6.01167,173,567 - 167,173,697NCBIRnor6.0
Rnor_5.01173,362,462 - 173,362,592UniSTSRnor5.0
RGSC_v3.41159,558,082 - 159,558,212UniSTSRGSC3.4
Celera1154,523,329 - 154,523,459UniSTS
RH 3.4 Map11276.9UniSTS
Cytogenetic Map1q32UniSTS
PMC152292P2  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21156,464,667 - 156,464,811 (+)MAPPERmRatBN7.2
Rnor_6.01167,184,111 - 167,184,254NCBIRnor6.0
Rnor_5.01173,373,006 - 173,373,149UniSTSRnor5.0
RGSC_v3.41159,568,292 - 159,568,435UniSTSRGSC3.4
Celera1154,533,001 - 154,533,144UniSTS
Cytogenetic Map1q32UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000045726   ⟹   ENSRNOP00000042378
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1156,460,009 - 156,473,073 (+)Ensembl
Rnor_6.0 Ensembl1167,179,452 - 167,192,801 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000048172   ⟹   ENSRNOP00000047354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1156,440,305 - 156,473,073 (+)Ensembl
Rnor_6.0 Ensembl1167,169,442 - 167,192,113 (+)Ensembl
RefSeq Acc Id: NM_022638   ⟹   NP_072160
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,871,991 - 165,884,978 (+)NCBI
mRatBN7.21156,460,009 - 156,472,996 (+)NCBI
RefSeq Acc Id: XM_008759812   ⟹   XP_008758034
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81165,872,106 - 165,885,339 (+)NCBI
mRatBN7.21156,460,124 - 156,473,039 (+)NCBI
Rnor_6.01167,180,103 - 167,192,456 (+)NCBI
Sequence:
RefSeq Acc Id: XP_008758034   ⟸   XM_008759812
- Peptide Label: isoform X1
- UniProtKB: A0A140TAF6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000042378   ⟸   ENSRNOT00000045726
Ensembl Acc Id: ENSRNOP00000047354   ⟸   ENSRNOT00000048172
RefSeq Acc Id: NP_072160   ⟸   NM_022638
- UniProtKB: A0A140TAF6 (UniProtKB/TrEMBL)
Protein Domains
Transient receptor ion channel

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9R283-F1-model_v2 AlphaFold Q9R283 1-1170 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:628819 AgrOrtholog
BioCyc Gene G2FUF-58258 BioCyc
Ensembl Genes ENSRNOG00000020188 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000045726 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.20 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
InterPro Ankyrin_rpt-contain_sf UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Ion_trans_dom UniProtKB/TrEMBL
  TRP_dom UniProtKB/TrEMBL
  TRPC2_channel UniProtKB/TrEMBL
  TRPC_channel UniProtKB/TrEMBL
  Xrcc1_N UniProtKB/TrEMBL
NCBI Gene 64573 ENTREZGENE
PANTHER PTHR10117 UniProtKB/TrEMBL
  PTHR10117:SF6 UniProtKB/TrEMBL
Pfam Ion_trans UniProtKB/TrEMBL
  TRP_2 UniProtKB/TrEMBL
  XRCC1_N UniProtKB/TrEMBL
PhenoGen Trpc2 PhenoGen
PRINTS TRNSRECEPTRP UniProtKB/TrEMBL
  TRPCHANNEL2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000020188 RatGTEx
SMART TRP_2 UniProtKB/TrEMBL
Superfamily-SCOP Galactose-binding domain-like UniProtKB/TrEMBL
  SSF48403 UniProtKB/TrEMBL
UniProt A0A140TAF6 ENTREZGENE, UniProtKB/TrEMBL
  A6I708_RAT UniProtKB/TrEMBL
  Q9R283 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-11 Trpc2  transient receptor potential cation channel subfamily C member 2  Trpc2  transient receptor potential cation channel, subfamily C, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2019-10-08 Trpc2  transient receptor potential cation channel, subfamily C, member 2  Trpc2  transient receptor potential cation channel, subfamily C, member 2, pseudogene  Name changed 629549 APPROVED
2013-08-02 Trpc2  transient receptor potential cation channel, subfamily C, member 2, pseudogene  Trpc2  transient receptor potential cation channel, subfamily C, member 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2003-04-09 Trpc2  transient receptor potential cation channel, subfamily C, member 2      Symbol and Name updated 629477 APPROVED
2003-03-12 Trpc2  transient receptor potential cation channel, subfamily C, member 2  Trrp2  transient receptor protein 2  Data merged from RGD:619784 628472 PROVISIONAL
2003-02-27 Trpc2  transient receptor protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-08-07 Trrp2  transient receptor protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_process expressed only in olfactory vomeronasal organ (VNO) 634237
gene_product member of the TRP family of ion channels (rTRP2) 634237
gene_protein 885 amino acids 634237