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Gene: Pdap1 (PDGFA associated protein 1) Rattus norvegicus

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Symbol:

Pdap1

Name:

PDGFA associated protein 1

RGD ID:

620442

Description:

Predicted to be active in cytosol. Orthologous to human PDAP1 (PDGFA associated protein 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,4-methylenedioxymethamphetamine; 4-amino-2,6-dinitrotoluene.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

28 kDa heat- and acid-stable phosphoprotein; Haspp28; heat- and acid-stable phosphoprotein of 28 kDa; kinase substrate HASPP28; PAP; PAP1; PDGF-associated protein; PDGFA-associated protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PDAP1 (PDGFA associated protein 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pdap1 (PDGFA associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pdap1 (PDGFA associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PDAP1 (PDGFA associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PDAP1 (PDGFA associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pdap1 (PDGFA associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PDAP1 (PDGFA associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PDAP1 (PDGFA associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pdap1 (PDGFA associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pdap1 (PDGFA associated protein 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PDAP1 (PDGFA associated protein 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Pdap1 (PDGFA associated protein 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pdap1b (pdgfa associated protein 1b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11444	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG11444	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4438	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4438	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pdap1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	14,584,414 - 14,594,641 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	14,584,398 - 14,594,641 (+)	Ensembl				GRCr8
mRatBN7.2	12	9,470,652 - 9,480,880 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	9,470,574 - 9,535,374 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	10,275,553 - 10,285,638 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	10,898,755 - 10,908,840 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	9,922,183 - 9,932,268 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	11,240,775 - 11,251,002 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	11,240,761 - 11,251,004 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	13,309,878 - 13,320,105 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	9,784,744 - 9,794,971 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	11,275,717 - 11,285,824 (+)	NCBI		Celera
RGSC_v3.1	12	9,814,671 - 9,824,899 (+)	NCBI
Cytogenetic Map	12	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

high grade glioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,6-dimethoxyphenol (ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (ISO)

4-amino-2,6-dinitrotoluene (EXP)

5-fluorouracil (ISO)

aconitine (EXP)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

beta-naphthoflavone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

caffeine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

choline (ISO)

chrysene (ISO)

dextran sulfate (ISO)

Dibutyl phosphate (ISO)

dichlorine (EXP)

doxorubicin (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenthion (ISO)

flutamide (EXP)

folic acid (ISO)

formaldehyde (ISO)

FR900359 (ISO)

fragrance (ISO)

furfural (ISO)

genistein (EXP)

ivermectin (ISO)

methidathion (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

nefazodone (EXP)

nitrates (ISO)

ochratoxin A (ISO)

ozone (EXP)

phenobarbital (ISO)

poly(I:C) (EXP)

progesterone (ISO)

quinoline (ISO)

rifampicin (ISO)

sodium arsenite (ISO)

sodium chloride (ISO)

sodium fluoride (ISO)

tert-butyl hydroperoxide (ISO)

tetrachloromethane (ISO)

thapsigargin (EXP)

titanium dioxide (ISO)

trichloroethene (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

tunicamycin (ISO)

valproic acid (ISO)

venlafaxine hydrochloride (EXP)

zinc dichloride (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytosol (IBA,IEA,ISO)

plasma membrane (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Characterization of a novel platelet-derived growth factor-associated protein.	Fischer WH and Schubert D, J Neurochem 1996 May;66(5):2213-6.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Increased expression of platelet-derived growth factor associated protein-1 is associated with PDGF-B mediated glioma progression.	Sharma VK, etal., Int J Biochem Cell Biol. 2016 Sep;78:194-205. doi: 10.1016/j.biocel.2016.07.016. Epub 2016 Jul 19.
7.	Molecular cloning and characterization of a novel casein kinase II substrate, HASPP28, from rat brain.	Shen L, etal., Arch Biochem Biophys 1996 Mar 1;327(1):131-41.

Additional References at PubMed

PMID:9757068	PMID:12477932	PMID:15489334	PMID:16396499	PMID:16641100	PMID:16854843	PMID:22681889

Genomics

Comparative Map Data

Pdap1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	14,584,414 - 14,594,641 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	14,584,398 - 14,594,641 (+)	Ensembl				GRCr8
mRatBN7.2	12	9,470,652 - 9,480,880 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	9,470,574 - 9,535,374 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	10,275,553 - 10,285,638 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	10,898,755 - 10,908,840 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	9,922,183 - 9,932,268 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	12	11,240,775 - 11,251,002 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	11,240,761 - 11,251,004 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	12	13,309,878 - 13,320,105 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	9,784,744 - 9,794,971 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	11,275,717 - 11,285,824 (+)	NCBI		Celera
RGSC_v3.1	12	9,814,671 - 9,824,899 (+)	NCBI
Cytogenetic Map	12	p11	NCBI

PDAP1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	99,394,673 - 99,408,597 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	99,392,048 - 99,408,665 (-)	Ensembl			hg38	GRCh38
GRCh37	7	98,992,296 - 99,006,220 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	98,830,525 - 98,844,228 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	98,637,239 - 98,650,943	NCBI
Celera	7	93,726,788 - 93,740,492 (-)	NCBI		Celera
Cytogenetic Map	7	q22.1	NCBI
HuRef	7	93,628,007 - 93,642,048 (-)	NCBI		HuRef
CHM1_1	7	98,922,373 - 98,936,383 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	100,633,574 - 100,647,498 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	98,352,069 - 98,366,079 (-)	NCBI

Pdap1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	145,065,580 - 145,076,835 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	145,065,579 - 145,077,048 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	145,128,770 - 145,140,025 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	145,128,769 - 145,140,238 (-)	Ensembl			mm10	GRCm38
MGSCv37	5	145,889,639 - 145,900,958 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	145,382,297 - 145,393,616 (-)	NCBI		MGSCv36	mm8
Celera	5	142,120,733 - 142,131,961 (-)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	85.04	NCBI

Pdap1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	15,072,667 - 15,083,329 (-)	Ensembl
ChiLan1.0	NW_004955460	15,072,667 - 15,083,329 (-)	NCBI	ChiLan1.0	ChiLan1.0

PDAP1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	117,253,722 - 117,266,396 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	165,518,357 - 165,531,031 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	91,369,488 - 91,382,161 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	104,871,576 - 104,884,276 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	104,871,576 - 104,884,276 (-)	Ensembl			panPan2	panpan1.1

PDAP1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	10,178,327 - 10,189,169 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	10,178,354 - 10,188,627 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	11,804,987 - 11,815,930 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	10,178,412 - 10,189,354 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	10,178,540 - 10,188,812 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	10,048,373 - 10,059,314 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	10,026,900 - 10,037,837 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	10,260,696 - 10,271,634 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pdap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	138,268,862 - 138,280,054 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936750	1,665,200 - 1,676,348 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936750	1,648,655 - 1,676,359 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PDAP1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	6,343,831 - 6,355,213 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	6,342,548 - 6,355,213 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	6,699,588 - 6,711,894 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PDAP1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	28	13,751,019 - 13,763,392 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	28	13,751,064 - 13,766,219 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666070	2,540,112 - 2,552,667 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pdap1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	32,821,865 - 32,832,848 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624740	32,821,865 - 32,832,891 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pdap1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	8,155,584 - 8,166,098 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pdap1
70 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	134
Count of miRNA genes:	94
Interacting mature miRNAs:	119
Transcripts:	ENSRNOT00000001310
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312418	Kidm41	Kidney mass QTL 41	3.7	0.0001	kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	12	5921918	25247790	Rat
70213	Niddm27	Non-insulin dependent diabetes mellitus QTL 27	3.72		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	11200494	52308831	Rat
2306789	Ean6	Experimental allergic neuritis QTL 6	4.9		nervous system integrity trait (VT:0010566)	experimental autoimmune neuritis severity score (CMO:0001528)	12	1	29775522	Rat
8552964	Pigfal17	Plasma insulin-like growth factor 1 level QTL 17	3.5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
7411641	Foco19	Food consumption QTL 19	27.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
1357337	Gluco3	Glucose level QTL 3		0.0004	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	12	1	16966671	Rat
5684888	Pia42	Pristane induced arthritis QTL 42			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	3489416	48489416	Rat
1331739	Hrtrt14	Heart rate QTL 14	3.56232		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	12	1	38687564	Rat
8552912	Pigfal6	Plasma insulin-like growth factor 1 level QTL 6	5		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200497	52308831	Rat
61331	Eau2	Experimental allergic uveoretinitis QTL 2		0.0005	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	12	1	33700600	Rat
10059594	Kidm46	Kidney mass QTL 46	3.79	0.025	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	12	11743528	52308831	Rat
8552918	Pigfal7	Plasma insulin-like growth factor 1 level QTL 7			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	12	11200494	52308831	Rat
1581516	Cm56	Cardiac mass QTL 56	4.2	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	12	11869600	16966542	Rat
61334	Gluco17	Glucose level QTL 17	6.3		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	12	1	16966671	Rat
2293684	Bmd26	Bone mineral density QTL 26	4.4	0.0002	femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	12	1	38635130	Rat
6893681	Bw109	Body weight QTL 109	2.3	0.004	body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28133365	Rat
1302792	Scl21	Serum cholesterol level QTL 21	3.8	0.0011	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	12	12233000	30490641	Rat
1300174	Bw15	Body weight QTL 15	2.93		body mass (VT:0001259)	body weight loss (CMO:0001399)	12	1	28606299	Rat
1331787	Rf41	Renal function QTL 41	2.998		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal blood flow rate (CMO:0001168)	12	1	33700556	Rat
724526	Uae3	Urinary albumin excretion QTL 3	4.9	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	12	1	15486827	Rat
1331763	Wbc2	White blood cell count QTL 2	3.162		leukocyte quantity (VT:0000217)	total white blood cell count (CMO:0000365)	12	11200494	52308831	Rat
7204484	Bp358	Blood pressure QTL 358		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	12	1	24849755	Rat
7411547	Bw129	Body weight QTL 129		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	6	11200494	52308831	Rat
7387292	Kidm42	Kidney mass QTL 42	3.03	0.0004	kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	12	1	41361854	Rat
1298081	Cia25	Collagen induced arthritis QTL 25	4.7		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	12	2747694	47747694	Rat
2303568	Bw88	Body weight QTL 88	3		body mass (VT:0001259)	body weight (CMO:0000012)	12	1	28606299	Rat
2303575	Insul14	Insulin level QTL 14	4		blood insulin amount (VT:0001560)	blood insulin level (CMO:0000349)	12	3087180	48087180	Rat
7411588	Foco6	Food consumption QTL 6		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat
7243862	Mcs30	Mammary carcinoma susceptibility QTL 30	8.62		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	12	5633306	50633306	Rat
2293086	Iddm30	Insulin dependent diabetes mellitus QTL 30	3.82		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	12	7901625	33938215	Rat
7411597	Foco10	Food consumption QTL 10		0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	12	11200494	52308831	Rat

Markers in Region

RH133263

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	12	9,480,981 - 9,481,169 (+)	MAPPER	mRatBN7.2
Rnor_6.0	12	11,251,104 - 11,251,291	NCBI	Rnor6.0
Rnor_5.0	12	13,320,207 - 13,320,394	UniSTS	Rnor5.0
RGSC_v3.4	12	9,795,073 - 9,795,260	UniSTS	RGSC3.4
Celera	12	11,285,926 - 11,286,113	UniSTS
Cytogenetic Map	12	p11	UniSTS

AA956475

Rat Assembly	Chr	Position (strand)	Source	JBrowse
RH 3.4 Map	12	121.1	UniSTS
Cytogenetic Map	12	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	92	59	6	356	192	11	142	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_022595	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC136010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088140	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000012	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U26541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U41744	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000001310 ⟹ ENSRNOP00000001310

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	14,584,398 - 14,594,640 (+)	Ensembl
mRatBN7.2 Ensembl	12	9,470,574 - 9,535,374 (+)	Ensembl
Rnor_6.0 Ensembl	12	11,240,761 - 11,251,004 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076383

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	12	11,247,176 - 11,249,129 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097544 ⟹ ENSRNOP00000085448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	14,586,057 - 14,594,641 (+)	Ensembl
mRatBN7.2 Ensembl	12	9,472,282 - 9,535,374 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100938 ⟹ ENSRNOP00000096235

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	12	14,587,542 - 14,594,641 (+)	Ensembl
mRatBN7.2 Ensembl	12	9,473,780 - 9,535,374 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114467 ⟹ ENSRNOP00000081375

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	12	9,472,655 - 9,535,374 (+)	Ensembl

RefSeq Acc Id:

NM_022595 ⟹ NP_072117

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	12	14,584,414 - 14,594,641 (+)	NCBI
mRatBN7.2	12	9,470,652 - 9,480,880 (+)	NCBI
Rnor_6.0	12	11,240,775 - 11,251,002 (+)	NCBI
Rnor_5.0	12	13,309,878 - 13,320,105 (+)	NCBI
RGSC_v3.4	12	9,784,744 - 9,794,971 (+)	RGD
Celera	12	11,275,717 - 11,285,824 (+)	RGD

Sequence:

show sequence

GCCGCCGCTGCAGCCGCCGGAGCCGAGATGCCTAAAGGAGGTAGAAAGGGAGGCCATAAAGGCC
GAGTGAGGCAGTATACAAGCCCTGAGGAGATCGATGCCCAGCTACAGGCTGAGAAGCAGAAGGC
CAACGAAGAAGATGAACAAGAAGAAGGTGGAGATGGGGCTTCGGGTGACCCCAAAAAGGAGAAG
AAATCTCTAGACTCAGATGAGAGTGAAGATGAAGATGATGACTACCAGCAAAAGCGAAAAGGTG
TGGAAGGGCTCATTGACATTGAGAACCCCAACCGGGTGGCACAGACGACTAAGAAGGTGACACA
ACTGGATCTGGATGGGCCAAAGGAACTTTCAAGGAGAGAACGAGAAGAAATAGAGAAGCAGAAA
GCAAAAGAGCGCTACATGAAAATGCATTTGGCTGGGAAGACGGAGCAGGCCAAGGCTGATCTCG
CCCGGCTGGCAATCATCCGGAAACAGCGGGAGGAAGCAGCAAGAAAGAAAGAAGAAGAGAGGAA
AGCAAAAGATGACGCAACTTTGTCAGGAAAACGAATGCAGTCGCTCTCCCTGAATAAGTAAGCT
GGCCTGTGGGAGGAGATGCCGGGGGAACTGGGCCGTGCCGCCAGGACCTCTGCCATGTCTCACC
CACTCTGTGCCCTGGCGCCGCTGCAGCAGCCCCTACGGCCAGGAGCCCCTACGGCCTGGGGCCT
CCTCTTCATCTTGGCACAGAAATTGTTCAGGGGATGTGGGGGGGGCTGGGGGGAGGGGCAGCTG
CTATCTTTGAGACAGAAAGATGCAGGACAGCATTTCATACGTAACCATTTGAATGTTTTTGCTG
TTTTTAGAATTCGGGCCCTGGTGGGGTGGGTGGGGTGCCTGGGAAGTGGCGTAAGGAGATTCCA
TTTGTCCAGTAGATTGCACGTTAGTGTGGGGAGGGGGGTGTGGTGCCAGCAGGCAGCTGCTGTG
GGAGTTGATGACAACCAGCCCAGATCATCTGGGTGCTCACTCAGAGGGGCTCTCCCGGAGCCTG
TGCCTCGAAAGGTCCGTCCGATGAAGCCTCTCCTCTCCACTCTGCCCCCTTCCCACCTACTTGG
TCAGGGCTAGTGCCCATTTTTAACCCTACCCATTGATCATTTCAAGAAACCTCTGGTTACTGTG
CATCACCCAGACAAGACGTGCTCTCAAATTCAACTTGTATATTTGGCAGATTAAACAACATTAT
AATA

hide sequence

Protein Sequences


Protein RefSeqs	NP_072117	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAC52455	(Get FASTA)	NCBI Sequence Viewer
	AAC52531	(Get FASTA)	NCBI Sequence Viewer
	AAH88140	(Get FASTA)	NCBI Sequence Viewer
	EDL89616	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000001310
	ENSRNOP00000001310.4
GenBank Protein	Q62785	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_072117 ⟸ NM_022595
- UniProtKB:	Q62890 (UniProtKB/Swiss-Prot), Q62785 (UniProtKB/Swiss-Prot), A6K1F8 (UniProtKB/TrEMBL), A0A8I6AQE8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPKGGRKGGHKGRVRQYTSPEEIDAQLQAEKQKANEEDEQEEGGDGASGDPKKEKKSLDSDESE DEDDDYQQKRKGVEGLIDIENPNRVAQTTKKVTQLDLDGPKELSRREREEIEKQKAKERYMKMH LAGKTEQAKADLARLAIIRKQREEAARKKEEERKAKDDATLSGKRMQSLSLNK hide sequence

Ensembl Acc Id:

ENSRNOP00000001310 ⟸ ENSRNOT00000001310

Ensembl Acc Id:

ENSRNOP00000096235 ⟸ ENSRNOT00000100938

Ensembl Acc Id:

ENSRNOP00000085448 ⟸ ENSRNOT00000097544

Ensembl Acc Id:

ENSRNOP00000081375 ⟸ ENSRNOT00000114467

Protein Domains

Casein kinase substrate phosphoprotein PP28

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q62785-F1-model_v2	AlphaFold	Q62785	1-181	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698418

Promoter ID:

EPDNEW_R8942

Type:

initiation region

Name:

Pdap1_1

Description:

PDGFA associated protein 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	12	11,240,762 - 11,240,822	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:620442	AgrOrtholog
BioCyc Gene	G2FUF-20056	BioCyc
Ensembl Genes	ENSRNOG00000000990	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000001310	ENTREZGENE
	ENSRNOT00000001310.8	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7382664	IMAGE-MGC_LOAD
InterPro	Casein_kinase_sb_PP28	UniProtKB/Swiss-Prot
	HAP28	UniProtKB/Swiss-Prot
KEGG Report	rno:64527	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:108688	IMAGE-MGC_LOAD
NCBI Gene	64527	ENTREZGENE
PANTHER	PTHR22055	UniProtKB/Swiss-Prot
Pfam	PP28	UniProtKB/Swiss-Prot
PhenoGen	Pdap1	PhenoGen
RatGTEx	ENSRNOG00000000990	RatGTEx
UniProt	A0A8I6A1E1_RAT	UniProtKB/TrEMBL
	A0A8I6AQE8	ENTREZGENE, UniProtKB/TrEMBL
	A6K1F8	ENTREZGENE, UniProtKB/TrEMBL
	HAP28_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q62890	ENTREZGENE
UniProt Secondary	Q62890	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Pdap1	PDGFA associated protein 1	Haspp28	kinase substrate HASPP28	Symbol and Name updated	1299863	APPROVED
2002-08-07	Haspp28	kinase substrate HASPP28			Symbol and Name status set to provisional	70820	PROVISIONAL

RGD Curation Notes

Note Type	Note	Reference
gene_expression	expressed in brain, lung, spleen, kidney, liver, heart, and muscle	632906

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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