Smim15 (small integral membrane protein 15) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Smim15 (small integral membrane protein 15) Rattus norvegicus
Analyze
Symbol: Smim15
Name: small integral membrane protein 15
RGD ID: 2324600
Description: Predicted to be located in membrane. Orthologous to human SMIM15 (small integral membrane protein 15); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; cadmium dichloride; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100359861; mCG51409-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8241,261,710 - 41,266,870 (+)NCBIGRCr8
mRatBN7.2239,528,256 - 39,533,416 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl239,527,425 - 39,534,237 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx246,633,727 - 46,638,892 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0244,692,405 - 44,697,570 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0239,543,030 - 39,548,305 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0239,314,714 - 39,319,874 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl239,314,714 - 39,319,874 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0258,399,558 - 58,404,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4239,261,978 - 39,266,536 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera235,370,373 - 35,375,533 (+)NCBICelera
Cytogenetic Map2q14NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Smim15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8241,261,710 - 41,266,870 (+)NCBIGRCr8
mRatBN7.2239,528,256 - 39,533,416 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl239,527,425 - 39,534,237 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx246,633,727 - 46,638,892 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0244,692,405 - 44,697,570 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0239,543,030 - 39,548,305 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0239,314,714 - 39,319,874 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl239,314,714 - 39,319,874 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0258,399,558 - 58,404,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4239,261,978 - 39,266,536 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera235,370,373 - 35,375,533 (+)NCBICelera
Cytogenetic Map2q14NCBI
SMIM15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38561,157,704 - 61,162,468 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl561,157,704 - 61,162,468 (-)EnsemblGRCh38hg38GRCh38
GRCh37560,453,531 - 60,458,295 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36560,489,293 - 60,494,059 (-)NCBINCBI36Build 36hg18NCBI36
Celera557,394,547 - 57,399,320 (-)NCBICelera
Cytogenetic Map5q12.1NCBI
HuRef557,412,218 - 57,416,984 (-)NCBIHuRef
CHM1_1560,453,200 - 60,457,968 (-)NCBICHM1_1
T2T-CHM13v2.0561,974,129 - 61,978,897 (-)NCBIT2T-CHM13v2.0
Smim15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3913108,181,008 - 108,185,680 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl13108,180,980 - 108,185,706 (+)EnsemblGRCm39 Ensembl
GRCm3813108,044,474 - 108,049,146 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl13108,044,446 - 108,049,172 (+)EnsemblGRCm38mm10GRCm38
MGSCv3713108,834,668 - 108,839,340 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3613108,834,668 - 108,839,340 (+)NCBIMGSCv36mm8
Celera13112,382,190 - 112,386,852 (+)NCBICelera
Cytogenetic Map13D2.1NCBI
cM Map1359.63NCBI
Smim15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554467,337,159 - 7,341,209 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554467,335,295 - 7,341,209 (+)NCBIChiLan1.0ChiLan1.0
SMIM15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2452,745,028 - 52,748,910 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1550,898,664 - 50,902,546 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0552,834,479 - 52,839,232 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1554,475,357 - 54,479,214 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl554,477,656 - 54,477,880 (+)Ensemblpanpan1.1panPan2
SMIM15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1247,710,451 - 47,716,139 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl247,712,959 - 47,714,511 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha244,786,253 - 44,791,949 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0248,187,688 - 48,193,373 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl248,189,208 - 48,191,753 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1245,257,736 - 45,263,431 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0246,044,270 - 46,049,966 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0246,896,278 - 46,901,974 (-)NCBIUU_Cfam_GSD_1.0
Smim15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213198,440,763 - 198,445,008 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364807,376,704 - 7,382,175 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364807,379,612 - 7,381,475 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SMIM15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1639,954,360 - 39,958,522 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11639,954,352 - 39,958,642 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21642,878,528 - 42,882,790 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SMIM15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1457,332,819 - 57,336,330 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl457,335,064 - 57,335,285 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660495,823,276 - 5,828,282 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Smim15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248158,855,156 - 8,858,386 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Smim15
32 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:178
Count of miRNA genes:125
Interacting mature miRNAs:151
Transcripts:ENSRNOT00000047282
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10755430Coatc6Coat color QTL 60.02576coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)21159110056591100Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
10755434Coatc7Coat color QTL 70.04794coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23064806575648065Rat
738010Lnnr3Liver neoplastic nodule remodeling QTL 32.94liver integrity trait (VT:0010547)liver remodeling tumorous lesion number (CMO:0001461)2141244106Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1300160Hrtrt3Heart rate QTL 33.62heart pumping trait (VT:2000009)absolute change in heart rate (CMO:0000534)22997159351729300Rat
731167Glom4Glomerulus QTL 42.40.0082kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)22030467265304672Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
738012Anxrr3Anxiety related response QTL 33.8exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)2902351954023519Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
10402051Gdil2Gastrointestinal dilation QTL 2enteric ganglion morphology trait (VT:0001045)length of intestine affected by colonic aganglionosis to total length of colon ratio (CMO:0001836)22490385374786777Rat
9590095Sffal3Serum free fatty acids level QTL 36.780.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)22715716072157160Rat
1331764Bp205Blood pressure QTL 2053.476arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22699957143154682Rat
731179Mamtr3Mammary tumor resistance QTL 30.0001mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)23237377043665178Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1600379Mcs18Mammary carcinoma susceptibility QTL 182.6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)2788777242804738Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1643006Pain1Pain QTL 13.630.005mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)22699957148268661Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
2300168Bmd47Bone mineral density QTL 476.60.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)22066244865662448Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1578664Bmd9Bone mineral QTL density 95femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)21185206249003364Rat
1357990Ael1Aortic elastin QTL 13.10.00091aorta elastin amount (VT:0003905)aortic elastin21907682564076825Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
731184Mamtr4Mammary tumor resistance QTL 40.0003mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)21649174061491740Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat

Markers in Region
RH144574  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,527,437 - 39,527,601 (+)MAPPERmRatBN7.2
Rnor_6.0239,313,896 - 39,314,059NCBIRnor6.0
Rnor_5.0258,398,740 - 58,398,903UniSTSRnor5.0
RGSC_v3.4239,261,163 - 39,261,326UniSTSRGSC3.4
Celera235,369,555 - 35,369,718UniSTS
RH 3.4 Map2177.1UniSTS
AI010651  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2239,533,791 - 39,533,907 (+)MAPPERmRatBN7.2
Rnor_6.0239,320,250 - 39,320,365NCBIRnor6.0
Rnor_5.0258,405,094 - 58,405,209UniSTSRnor5.0
RGSC_v3.4239,267,517 - 39,267,632UniSTSRGSC3.4
Celera235,375,911 - 35,376,026UniSTS
RH 3.4 Map2178.2UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001277209 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001277210 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063281080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC090004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC104707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV727401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM091405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM095465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM102895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM112181 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM114671 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM127940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ219959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ229399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000047282   ⟹   ENSRNOP00000042302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,528,896 - 39,533,418 (+)Ensembl
Rnor_6.0 Ensembl239,314,730 - 39,319,271 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000083786   ⟹   ENSRNOP00000069935
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,528,256 - 39,533,416 (+)Ensembl
Rnor_6.0 Ensembl239,314,714 - 39,319,874 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103806   ⟹   ENSRNOP00000088205
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,528,491 - 39,534,237 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000109009   ⟹   ENSRNOP00000091268
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,528,238 - 39,534,237 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111744   ⟹   ENSRNOP00000083129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl239,527,425 - 39,534,237 (+)Ensembl
RefSeq Acc Id: NM_001277209   ⟹   NP_001264138
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,261,710 - 41,266,870 (+)NCBI
mRatBN7.2239,528,256 - 39,533,416 (+)NCBI
Rnor_6.0239,314,714 - 39,319,874 (+)NCBI
Rnor_5.0258,399,558 - 58,404,718 (+)NCBI
Celera235,370,373 - 35,375,533 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001277210   ⟹   NP_001264139
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,261,710 - 41,266,870 (+)NCBI
mRatBN7.2239,528,256 - 39,533,416 (+)NCBI
Rnor_6.0239,314,714 - 39,319,874 (+)NCBI
Rnor_5.0258,399,558 - 58,404,718 (+)NCBI
Celera235,370,373 - 35,375,533 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063281080   ⟹   XP_063137150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8241,261,740 - 41,266,265 (+)NCBI
RefSeq Acc Id: NP_001264138   ⟸   NM_001277209
- Peptide Label: isoform 1
- UniProtKB: D4A573 (UniProtKB/TrEMBL),   A6I5J6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001264139   ⟸   NM_001277210
- Peptide Label: isoform 2
- UniProtKB: A0A0G2JWM3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000069935   ⟸   ENSRNOT00000083786
Ensembl Acc Id: ENSRNOP00000042302   ⟸   ENSRNOT00000047282
Ensembl Acc Id: ENSRNOP00000088205   ⟸   ENSRNOT00000103806
Ensembl Acc Id: ENSRNOP00000083129   ⟸   ENSRNOT00000111744
Ensembl Acc Id: ENSRNOP00000091268   ⟸   ENSRNOT00000109009
RefSeq Acc Id: XP_063137150   ⟸   XM_063281080
- Peptide Label: isoform X1
- UniProtKB: A6I5J6 (UniProtKB/TrEMBL),   D4A573 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JWM3-F1-model_v2 AlphaFold A0A0G2JWM3 1-74 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13691127
Promoter ID:EPDNEW_R1652
Type:multiple initiation site
Name:Smim15_1
Description:small integral membrane protein 15
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0239,314,720 - 39,314,780EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324600 AgrOrtholog
BioCyc Gene G2FUF-54470 BioCyc
Ensembl Genes ENSRNOG00000031995 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047282.5 UniProtKB/TrEMBL
  ENSRNOT00000083786.2 UniProtKB/TrEMBL
  ENSRNOT00000103806.1 UniProtKB/TrEMBL
  ENSRNOT00000109009.1 UniProtKB/TrEMBL
  ENSRNOT00000111744.1 UniProtKB/TrEMBL
InterPro Smim15 UniProtKB/TrEMBL
KEGG Report rno:100359861 UniProtKB/TrEMBL
NCBI Gene 100359861 ENTREZGENE
PANTHER PTHR28644 UniProtKB/TrEMBL
  SMALL INTEGRAL MEMBRANE PROTEIN 15 UniProtKB/TrEMBL
Pfam UPF0542 UniProtKB/TrEMBL
PhenoGen Smim15 PhenoGen
RatGTEx ENSRNOG00000031995 RatGTEx
UniProt A0A0G2JWM3 ENTREZGENE, UniProtKB/TrEMBL
  A6I5J6 ENTREZGENE, UniProtKB/TrEMBL
  D4A573 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-18 Smim15  small integral membrane protein 15  LOC100359861  mCG51409-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100359861  mCG51409-like      Symbol and Name status set to provisional 70820 PROVISIONAL