Cfap74 (cilia and flagella associated protein 74) - Rat Genome Database

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Gene: Cfap74 (cilia and flagella associated protein 74) Rattus norvegicus
Analyze
Symbol: Cfap74
Name: cilia and flagella associated protein 74
RGD ID: 2324110
Description: Predicted to be located in cytoplasm; nucleus; and sperm flagellum. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia. Orthologous to human CFAP74 (cilia and flagella associated protein 74); INTERACTS WITH trichloroethene; 17beta-estradiol (ortholog); 4,4'-sulfonyldiphenol (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cilia- and flagella-associated protein 74; hCG1647286-like; LOC100362748
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,252,907 - 171,328,351 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5171,262,113 - 171,328,349 (+)EnsemblGRCr8
mRatBN7.25165,970,611 - 166,046,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd5170,837,448 - 170,903,753 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive5172,854,187 - 172,920,173 (+)NCBILyon_Normotensive
Lyon_Hypertensive5172,029,861 - 172,096,165 (+)NCBILyon_Hypertensive
F344_StmMcwi5165,571,658 - 165,637,964 (+)NCBIF344_StmMcwi
Rnor_6.05172,817,221 - 172,884,996 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,825,072 - 172,858,053 (+)Ensemblrn6Rnor6.0
Rnor_5.05176,277,036 - 176,343,438 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45172,232,911 - 172,291,211 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5164,180,632 - 164,247,841 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)
sperm flagellum  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cfap74
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,252,907 - 171,328,351 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl5171,262,113 - 171,328,349 (+)EnsemblGRCr8
mRatBN7.25165,970,611 - 166,046,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)EnsemblmRatBN7.2
Dahl_SR_JrHsd5170,837,448 - 170,903,753 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive5172,854,187 - 172,920,173 (+)NCBILyon_Normotensive
Lyon_Hypertensive5172,029,861 - 172,096,165 (+)NCBILyon_Hypertensive
F344_StmMcwi5165,571,658 - 165,637,964 (+)NCBIF344_StmMcwi
Rnor_6.05172,817,221 - 172,884,996 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,825,072 - 172,858,053 (+)Ensemblrn6Rnor6.0
Rnor_5.05176,277,036 - 176,343,438 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.45172,232,911 - 172,291,211 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera5164,180,632 - 164,247,841 (+)NCBICelera
Cytogenetic Map5q36NCBI
CFAP74
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,921,957 - 2,003,786 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,921,951 - 2,003,837 (-)Ensemblhg38GRCh38
GRCh3711,853,396 - 1,935,225 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,874,612 - 1,925,136 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1658,422 - 708,504 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef11,161,883 - 1,212,506 (-)NCBIHuRef
CHM1_111,871,902 - 1,922,477 (-)NCBICHM1_1
T2T-CHM13v2.011,356,370 - 1,439,078 (-)NCBIT2T-CHM13v2.0
Cfap74
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,493,647 - 155,551,280 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,493,647 - 155,551,280 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm384155,392,099 - 155,466,823 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,409,190 - 155,466,823 (+)Ensemblmm10GRCm38
MGSCv374154,783,299 - 154,817,219 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv364154,253,058 - 154,286,910 (+)NCBIMGSCv36mm8
Celera4157,683,449 - 157,718,128 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map486.17NCBI
Cfap74
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,057,030 - 9,107,600 (+)Ensembl
ChiLan1.0NW_0049554869,056,836 - 9,107,572 (+)NCBIChiLan1.0ChiLan1.0
CFAP74
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,260,204 - 226,353,608 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,918,288 - 225,009,476 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01627,950 - 715,982 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,785,210 - 1,869,228 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,785,550 - 1,856,062 (-)EnsemblpanPan2panpan1.1
CFAP74
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,909,092 - 56,970,980 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,909,486 - 56,961,903 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha556,984,376 - 57,048,112 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0557,110,833 - 57,174,618 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,111,227 - 57,185,751 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,101,397 - 57,150,685 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,993,905 - 57,057,613 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,383,747 - 57,447,438 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Cfap74
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,001,051 - 28,024,450 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,416,475 - 1,465,984 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP74
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,976,346 - 64,024,562 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1663,976,011 - 64,038,899 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,483,738 - 58,545,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP74
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,555,060 - 129,626,465 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605433,946,381 - 34,022,755 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap74
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,882,658 - 7,918,521 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Cfap74
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v115,236,950 - 5,301,253 (-)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:66
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000050630, ENSRNOT00000068525
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555124766172190305Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5130249266172190305Rat
1354583Despr3Despair related QTL34.980.0002locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)5132930505172190305Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5141212838172190305Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5131708216172190305Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)599905133172190305Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5133789363172190305Rat
1331803Rf32Renal function QTL 322.798kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)5134369199172190305Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5136631198172190305Rat
1354631Swd2Spike wave discharge measurement QTL 23.640.0002brain electrophysiology trait (VT:0010557)brain total spike-and-wave discharge duration (CMO:0001740)5156396728172190305Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5133081618172190305Rat
1581505Rf54Renal function QTL 54kidney physiology trait (VT:0002136)kidney 20-HETE level (CMO:0001854)5133270647172190305Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5160071170172129029Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)5141764300172190305Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5133081618172190305Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5148093485172129029Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5133789363172190305Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5125969677172190305Rat

Markers in Region
BF390121  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,045,904 - 166,046,066 (+)MAPPERmRatBN7.2
Rnor_6.05172,884,834 - 172,884,995NCBIRnor6.0
Rnor_5.05176,342,712 - 176,342,873UniSTSRnor5.0
RGSC_v3.45172,290,379 - 172,290,540UniSTSRGSC3.4
Celera5164,247,679 - 164,247,840UniSTS
RH 3.4 Map51157.1UniSTS
BE107998  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,010,567 - 166,010,750 (+)MAPPERmRatBN7.2
Rnor_6.05172,849,517 - 172,849,699NCBIRnor6.0
Rnor_5.05176,307,396 - 176,307,578UniSTSRnor5.0
RGSC_v3.45172,255,063 - 172,255,245UniSTSRGSC3.4
Celera5164,212,851 - 164,213,033UniSTS
RH 3.4 Map51157.2UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
7 5 15 151 33 34 4 28 4 6 128 71 10 125 42 82 30 8 8

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000068525   ⟹   ENSRNOP00000062897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5171,262,113 - 171,327,729 (+)Ensembl
mRatBN7.2 Ensembl5165,979,899 - 166,046,071 (+)Ensembl
Rnor_6.0 Ensembl5172,825,072 - 172,858,053 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097549   ⟹   ENSRNOP00000092255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5171,262,113 - 171,328,349 (+)Ensembl
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100074   ⟹   ENSRNOP00000081714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5171,262,113 - 171,328,349 (+)Ensembl
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000166940   ⟹   ENSRNOP00000106871
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl5171,262,113 - 171,327,954 (+)Ensembl
RefSeq Acc Id: NM_001431304   ⟹   NP_001418233
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd5170,837,448 - 170,903,753 (+)NCBI
Lyon_Normotensive5172,854,187 - 172,920,173 (+)NCBI
Lyon_Hypertensive5172,029,861 - 172,096,165 (+)NCBI
F344_StmMcwi5165,571,658 - 165,637,964 (+)NCBI
RefSeq Acc Id: NM_001431305   ⟹   NP_001418234
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd5170,837,448 - 170,903,753 (+)NCBI
Lyon_Normotensive5172,854,187 - 172,920,173 (+)NCBI
Lyon_Hypertensive5172,029,861 - 172,096,165 (+)NCBI
F344_StmMcwi5165,571,658 - 165,637,964 (+)NCBI
RefSeq Acc Id: NM_001431306   ⟹   NP_001418235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Dahl_SR_JrHsd5170,837,448 - 170,868,330 (+)NCBI
Lyon_Normotensive5172,854,187 - 172,884,899 (+)NCBI
Lyon_Hypertensive5172,029,861 - 172,060,743 (+)NCBI
F344_StmMcwi5165,571,658 - 165,602,540 (+)NCBI
RefSeq Acc Id: XM_008764399   ⟹   XP_008762621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,636 - 166,046,068 (+)NCBI
Rnor_6.05172,817,221 - 172,884,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764400   ⟹   XP_008762622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,633 - 166,046,068 (+)NCBI
Rnor_6.05172,817,221 - 172,884,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764402   ⟹   XP_008762624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,634 - 166,046,068 (+)NCBI
Rnor_6.05172,817,221 - 172,884,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764405   ⟹   XP_008762627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,327,866 (+)NCBI
mRatBN7.25165,979,637 - 166,046,068 (+)NCBI
Rnor_6.05172,817,221 - 172,884,586 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764406   ⟹   XP_008762628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,262,068 - 171,316,228 (+)NCBI
mRatBN7.25165,979,653 - 166,033,945 (+)NCBI
Rnor_6.05172,817,224 - 172,872,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593895   ⟹   XP_017449384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,326,205 (+)NCBI
mRatBN7.25165,979,641 - 166,043,926 (+)NCBI
Rnor_6.05172,817,221 - 172,881,899 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111375   ⟹   XP_038967303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,252,907 - 171,328,351 (+)NCBI
mRatBN7.25165,970,611 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111376   ⟹   XP_038967304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,634 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111378   ⟹   XP_038967306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,634 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111379   ⟹   XP_038967307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,632 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111383   ⟹   XP_038967311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,638 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111385   ⟹   XP_038967313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,283,714 - 171,328,351 (+)NCBI
mRatBN7.25166,001,435 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111387   ⟹   XP_038967315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,292,891 - 171,328,351 (+)NCBI
mRatBN7.25166,010,608 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111388   ⟹   XP_038967316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,295,419 - 171,328,351 (+)NCBI
mRatBN7.25166,013,135 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111391   ⟹   XP_038967319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,262,068 - 171,309,873 (+)NCBI
mRatBN7.25165,979,653 - 166,027,379 (+)NCBI
RefSeq Acc Id: XM_063261339   ⟹   XP_063117409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,262,057 - 171,311,229 (+)NCBI
RefSeq Acc Id: XR_005505153
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,327,729 (+)NCBI
mRatBN7.25165,979,640 - 166,045,445 (+)NCBI
RefSeq Acc Id: XR_005505154
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,326,210 (+)NCBI
mRatBN7.25165,979,642 - 166,043,926 (+)NCBI
RefSeq Acc Id: XP_008762621   ⟸   XM_008764399
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008762624   ⟸   XM_008764402
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZTH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762622   ⟸   XM_008764400
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008762627   ⟸   XM_008764405
- Peptide Label: isoform X8
- UniProtKB: F1LW62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762628   ⟸   XM_008764406
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_017449384   ⟸   XM_017593895
- Peptide Label: isoform X9
- Sequence:
Ensembl Acc Id: ENSRNOP00000062897   ⟸   ENSRNOT00000068525
RefSeq Acc Id: XP_038967303   ⟸   XM_039111375
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AGS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967307   ⟸   XM_039111379
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038967304   ⟸   XM_039111376
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038967306   ⟸   XM_039111378
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038967311   ⟸   XM_039111383
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038967319   ⟸   XM_039111391
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038967313   ⟸   XM_039111385
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038967315   ⟸   XM_039111387
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038967316   ⟸   XM_039111388
- Peptide Label: isoform X13
Ensembl Acc Id: ENSRNOP00000092255   ⟸   ENSRNOT00000097549
Ensembl Acc Id: ENSRNOP00000081714   ⟸   ENSRNOT00000100074
RefSeq Acc Id: XP_063117409   ⟸   XM_063261339
- Peptide Label: isoform X12
Ensembl Acc Id: ENSRNOP00000106871   ⟸   ENSRNOT00000166940
RefSeq Acc Id: NP_001418234   ⟸   NM_001431305
RefSeq Acc Id: NP_001418233   ⟸   NM_001431304
RefSeq Acc Id: NP_001418235   ⟸   NM_001431306
Protein Domains
CFAP74 fourth Ig-like   CFAP74 second Ig-like   CFAP74 third Ig-like   MSP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LW62-F1-model_v2 AlphaFold F1LW62 1-784 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324110 AgrOrtholog
BioCyc Gene G2FUF-38927 BioCyc
Ensembl Genes ENSRNOG00000023627 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068525 ENTREZGENE
  ENSRNOT00000068525.6 UniProtKB/TrEMBL
  ENSRNOT00000097549 ENTREZGENE
  ENSRNOT00000097549.2 UniProtKB/TrEMBL
  ENSRNOT00000100074 ENTREZGENE
  ENSRNOT00000100074.2 UniProtKB/TrEMBL
  ENSRNOT00000166940.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-CFAP74_2nd UniProtKB/TrEMBL
  Ig-CFAP74_3rd UniProtKB/TrEMBL
  Ig-CFAP74_4th UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  MSP_dom UniProtKB/TrEMBL
KEGG Report rno:100362748 UniProtKB/TrEMBL
NCBI Gene 100362748 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 74 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
Pfam Ig-CFAP74_2 UniProtKB/TrEMBL
  Ig-CFAP74_3rd UniProtKB/TrEMBL
  Ig-CFAP74_4th UniProtKB/TrEMBL
  Ig-CFAP74_DLCEC1_1st UniProtKB/TrEMBL
PhenoGen Cfap74 PhenoGen
PROSITE MSP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023627 RatGTEx
UniProt A0A8I5ZTH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGS2 ENTREZGENE, UniProtKB/TrEMBL
  A0ABK0L953_RAT UniProtKB/TrEMBL
  F1LW62 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-09-30 Cfap74  cilia and flagella associated protein 74  LOC100362748  hCG1647286-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100362748  hCG1647286-like      Symbol and Name status set to provisional 70820 PROVISIONAL