Advanced Search (OLGA)

Gene: Cfap74 (cilia and flagella associated protein 74) Ictidomys tridecemlineatus

Subscribe to Updates

Analyze

Symbol:

Cfap74

Name:

cilia and flagella associated protein 74

RGD ID:

12576223

Description:

ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sperm flagellum (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cilia- and flagella-associated protein 74

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

SpeTri2.0 - Squirrel SpeTri2.0 Assembly

Position:

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	28,001,051 - 28,024,450 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936737	1,416,475 - 1,465,984 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap74	Squirrel	chromosome 1p36 deletion syndrome		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Chromosome 1p36 deletion syndrome	ClinVar
Cfap74	Squirrel	congenital myasthenic syndrome 8		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital myasthenic syndrome 8	ClinVar	PMID:24951643 and PMID:28492532
Cfap74	Squirrel	dilated cardiomyopathy 1LL		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Left ventricular noncompaction 8	ClinVar	PMID:28492532
Cfap74	Squirrel	Ehlers-Danlos syndrome spondylodysplastic type 2		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Ehlers-Danlos syndrome more ...	ClinVar	PMID:10862081 more ...
Cfap74	Squirrel	Goldberg-Shprintzen syndrome		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Shprintzen-Goldberg syndrome	ClinVar	PMID:23892090 more ...
Cfap74	Squirrel	Idiopathic Generalized Epilepsy		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Idiopathic generalized epilepsy	ClinVar	PMID:28492532
Cfap74	Squirrel	immunodeficiency 16		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Combined immunodeficiency due to OX40 deficiency	ClinVar	PMID:10862081 more ...
Cfap74	Squirrel	immunodeficiency 38		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Mendelian susceptibility to mycobacterial diseases due to complete ISG15 deficiency	ClinVar	PMID:10862081 more ...
Cfap74	Squirrel	Joubert syndrome 25		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Joubert syndrome 25	ClinVar	PMID:10862081 more ...
Cfap74	Squirrel	Neurodevelopmental Disorders		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Neurodevelopmental disorder	ClinVar	PMID:25741868
Cfap74	Squirrel	Peroxisome Biogenesis Disorder, Complementation Group 7		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Peroxisome biogenesis disorder and complementation group 7	ClinVar	PMID:10862081 more ...
Cfap74	Squirrel	Primary Ciliary Dyskinesia 49		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar more ...	ClinVar	PMID:25741868 more ...
Cfap74	Squirrel	Shprintzen-Goldberg Craniosynostosis		ISO	CFAP74 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Shprintzen-Goldberg syndrome	ClinVar	PMID:23892090 more ...

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap74	Squirrel	Primary Ciliary Dyskinesia 49		ISO	CFAP74 (Homo sapiens)	7240710		OMIM

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap74	Squirrel	cytoplasm	located_in	ISO	CFAP74 (Homo sapiens)	9068941	PMID:34999892	UniProt	PMID:34999892
Cfap74	Squirrel	nucleus	located_in	ISO	CFAP74 (Homo sapiens)	9068941	PMID:34999892	UniProt	PMID:34999892
Cfap74	Squirrel	sperm flagellum	located_in	ISO	CFAP74 (Homo sapiens)	9068941	PMID:32555313	UniProt	PMID:32555313

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap74	Squirrel	protein binding	enables	ISO	UniProtKB:Q9NUD7	9068941	PMID:28514442 and PMID:33961781	IntAct	PMID:28514442 and PMID:33961781

Cfap74
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	28,001,051 - 28,024,450 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936737	1,416,475 - 1,465,984 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP74
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	1,921,957 - 2,003,786 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	1,921,951 - 2,003,837 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	1,853,396 - 1,935,225 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	1,874,612 - 1,925,136 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	658,422 - 708,504 (+)	NCBI		Celera
Cytogenetic Map	1	p36.33	NCBI
HuRef	1	1,161,883 - 1,212,506 (-)	NCBI		HuRef
CHM1_1	1	1,871,902 - 1,922,477 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	1,356,370 - 1,439,078 (-)	NCBI		T2T-CHM13v2.0

Cfap74
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	155,493,647 - 155,551,280 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	155,493,647 - 155,551,280 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	155,392,099 - 155,466,823 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	155,409,190 - 155,466,823 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	154,783,299 - 154,817,219 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	154,253,058 - 154,286,910 (+)	NCBI		MGSCv36	mm8
Celera	4	157,683,449 - 157,718,128 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	86.17	NCBI

Cfap74
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	171,252,907 - 171,328,351 (+)	NCBI		GRCr8
mRatBN7.2	5	165,970,611 - 166,046,068 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	165,979,805 - 166,046,071 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	172,817,221 - 172,884,996 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	172,825,072 - 172,858,053 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	176,277,036 - 176,343,438 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	172,232,911 - 172,291,211 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	164,180,632 - 164,247,841 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

Cfap74
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955486	9,057,030 - 9,107,600 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955486	9,056,836 - 9,107,572 (+)	NCBI	ChiLan1.0	ChiLan1.0

CFAP74
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	226,260,204 - 226,353,608 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	224,918,288 - 225,009,476 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	627,950 - 715,982 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	1,785,210 - 1,869,228 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	1,785,550 - 1,856,062 (-)	Ensembl	panpan1.1		panPan2

CFAP74
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	56,909,092 - 56,970,980 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	56,909,486 - 56,961,903 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	56,984,376 - 57,048,112 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	57,110,833 - 57,174,618 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	57,111,227 - 57,185,751 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	57,101,397 - 57,150,685 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	56,993,905 - 57,057,613 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	57,383,747 - 57,447,438 (-)	NCBI		UU_Cfam_GSD_1.0

CFAP74
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	63,976,346 - 64,024,562 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	63,976,011 - 64,038,899 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	58,483,738 - 58,545,088 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP74
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	129,555,060 - 129,626,465 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	33,946,381 - 34,022,755 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap74
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	7,882,658 - 7,918,521 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	7,876,727 - 7,916,762 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_005339287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_040287774	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAESOR010000117	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_040287774 ⟹ XP_040143708

Type:

CODING

Position:

Squirrel Assembly	Chr	Position (strand)	Source
HiC_Itri_2	NW_024405058	28,001,051 - 28,024,450 (-)	NCBI


Protein RefSeqs	XP_040143708	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	KAG3281937	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

XP_040143708 ⟸ XM_040287774

Database	Acc Id	Source(s)
NCBI Gene	Cfap74	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
		Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM