Cfap74 (cilia and flagella associated protein 74) - Rat Genome Database

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Gene: Cfap74 (cilia and flagella associated protein 74) Ictidomys tridecemlineatus
Analyze
Symbol: Cfap74
Name: cilia and flagella associated protein 74
RGD ID: 12576223
Description: ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 74
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,001,051 - 28,024,450 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,416,475 - 1,465,984 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)
sperm flagellum  (ISO)

Molecular Function

References

Genomics

Comparative Map Data
Cfap74
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,001,051 - 28,024,450 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,416,475 - 1,465,984 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP74
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,921,957 - 2,003,786 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,921,951 - 2,003,837 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,853,396 - 1,935,225 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,874,612 - 1,925,136 (-)NCBINCBI36Build 36hg18NCBI36
Celera1658,422 - 708,504 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef11,161,883 - 1,212,506 (-)NCBIHuRef
CHM1_111,871,902 - 1,922,477 (-)NCBICHM1_1
T2T-CHM13v2.011,356,370 - 1,439,078 (-)NCBIT2T-CHM13v2.0
Cfap74
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,493,647 - 155,551,280 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,493,647 - 155,551,280 (+)EnsemblGRCm39 Ensembl
GRCm384155,392,099 - 155,466,823 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,409,190 - 155,466,823 (+)EnsemblGRCm38mm10GRCm38
MGSCv374154,783,299 - 154,817,219 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,253,058 - 154,286,910 (+)NCBIMGSCv36mm8
Celera4157,683,449 - 157,718,128 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map486.17NCBI
Cfap74
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,252,907 - 171,328,351 (+)NCBIGRCr8
mRatBN7.25165,970,611 - 166,046,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05172,817,221 - 172,884,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,825,072 - 172,858,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,277,036 - 176,343,438 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,232,911 - 172,291,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5164,180,632 - 164,247,841 (+)NCBICelera
Cytogenetic Map5q36NCBI
Cfap74
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,057,030 - 9,107,600 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,056,836 - 9,107,572 (+)NCBIChiLan1.0ChiLan1.0
CFAP74
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,260,204 - 226,353,608 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,918,288 - 225,009,476 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01627,950 - 715,982 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,785,210 - 1,869,228 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,785,550 - 1,856,062 (-)Ensemblpanpan1.1panPan2
CFAP74
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,909,092 - 56,970,980 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,909,486 - 56,961,903 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,984,376 - 57,048,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0557,110,833 - 57,174,618 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,111,227 - 57,185,751 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,101,397 - 57,150,685 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,993,905 - 57,057,613 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,383,747 - 57,447,438 (-)NCBIUU_Cfam_GSD_1.0
CFAP74
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,976,346 - 64,024,562 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,976,011 - 64,038,899 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,483,738 - 58,545,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP74
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,555,060 - 129,626,465 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605433,946,381 - 34,022,755 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap74
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,882,658 - 7,918,521 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_040287774   ⟹   XP_040143708
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_02440505828,001,051 - 28,024,450 (-)NCBI
Protein Sequences
Protein RefSeqs XP_040143708 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein KAG3281937 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_040143708   ⟸   XM_040287774


Additional Information

Database Acc Id Source(s)
NCBI Gene Cfap74 ENTREZGENE