Cfap74 (cilia and flagella associated protein 74) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cfap74 (cilia and flagella associated protein 74) Rattus norvegicus
Analyze
Symbol: Cfap74
Name: cilia and flagella associated protein 74
RGD ID: 2324110
Description: Predicted to be located in cytoplasm; nucleus; and sperm flagellum. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia. Orthologous to human CFAP74 (cilia and flagella associated protein 74); INTERACTS WITH trichloroethene; 17beta-estradiol (ortholog); 4,4'-sulfonyldiphenol (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cilia- and flagella-associated protein 74; hCG1647286-like; LOC100362748
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,252,907 - 171,328,351 (+)NCBIGRCr8
mRatBN7.25165,970,611 - 166,046,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05172,817,221 - 172,884,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,825,072 - 172,858,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,277,036 - 176,343,438 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,232,911 - 172,291,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5164,180,632 - 164,247,841 (+)NCBICelera
Cytogenetic Map5q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
nucleus  (ISO)
sperm flagellum  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Cfap74
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,252,907 - 171,328,351 (+)NCBIGRCr8
mRatBN7.25165,970,611 - 166,046,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05172,817,221 - 172,884,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,825,072 - 172,858,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,277,036 - 176,343,438 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,232,911 - 172,291,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5164,180,632 - 164,247,841 (+)NCBICelera
Cytogenetic Map5q36NCBI
CFAP74
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,921,957 - 2,003,786 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,921,951 - 2,003,837 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,853,396 - 1,935,225 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,874,612 - 1,925,136 (-)NCBINCBI36Build 36hg18NCBI36
Celera1658,422 - 708,504 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef11,161,883 - 1,212,506 (-)NCBIHuRef
CHM1_111,871,902 - 1,922,477 (-)NCBICHM1_1
T2T-CHM13v2.011,356,370 - 1,439,078 (-)NCBIT2T-CHM13v2.0
2010015L04Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,493,647 - 155,551,280 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,493,647 - 155,551,280 (+)EnsemblGRCm39 Ensembl
GRCm384155,392,099 - 155,466,823 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,409,190 - 155,466,823 (+)EnsemblGRCm38mm10GRCm38
MGSCv374154,783,299 - 154,817,219 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,253,058 - 154,286,910 (+)NCBIMGSCv36mm8
Celera4157,683,449 - 157,718,128 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map486.17NCBI
Cfap74
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,057,030 - 9,107,600 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,056,836 - 9,107,572 (+)NCBIChiLan1.0ChiLan1.0
CFAP74
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,260,204 - 226,353,608 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,918,288 - 225,009,476 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01627,950 - 715,982 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,785,210 - 1,869,228 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,785,550 - 1,856,062 (-)Ensemblpanpan1.1panPan2
CFAP74
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,909,092 - 56,970,980 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,909,486 - 56,961,903 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,984,376 - 57,048,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0557,110,833 - 57,174,618 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,111,227 - 57,185,751 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,101,397 - 57,150,685 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,993,905 - 57,057,613 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,383,747 - 57,447,438 (-)NCBIUU_Cfam_GSD_1.0
Cfap74
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,001,051 - 28,024,450 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,416,475 - 1,465,984 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP74
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,976,346 - 64,024,562 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,976,011 - 64,038,899 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,483,738 - 58,545,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP74
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,555,060 - 129,626,465 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605433,946,381 - 34,022,755 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap74
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,882,658 - 7,918,521 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cfap74
270 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:75
Count of miRNA genes:66
Interacting mature miRNAs:70
Transcripts:ENSRNOT00000050630, ENSRNOT00000068525
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631272Lanf1Left ventricular atrial natriuretic factor QTL 112heart left ventricle natriuretic peptide A amount (VT:0010596)heart left ventricle natriuretic peptide A level (CMO:0002165)5151113452166875058Rat
10053720Scort26Serum corticosterone level QTL 262.060.0147blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)5124965598166875058Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
631562Apr2Acute phase response QTL 23.7blood murinoglobulin 1 amount (VT:0010597)plasma murinoglobulin 1 level (CMO:0001931)5135927956166875058Rat
61444Strs2Sensitivity to stroke QTL 24.7cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)5135929696166875058Rat
634349Bp139Blood pressure QTL 1390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5128924607166875058Rat
724525Bp147Blood pressure QTL 1474.30.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5126424772166875058Rat
1549904Neuinf1Neuroinflammation QTL 130nervous system integrity trait (VT:0010566)blood T lymphocyte count (CMO:0000110)5154828214166875058Rat
738018Anxrr4Anxiety related response QTL 45.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)5130130159166875058Rat
8552908Pigfal4Plasma insulin-like growth factor 1 level QTL 46.6blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5128506074166875058Rat
7794791Mcs33Mammary carcinoma susceptibility QTL 331.93mammary gland integrity trait (VT:0010552)mammary tumor incidence/prevalence measurement (CMO:0000946)5131345754166875058Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1598861Cm64Cardiac mass QTL 642.9heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5127798274166875058Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
1598819Bp292Blood pressure QTL 2924.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5127798274166875058Rat
1331721Bp210Blood pressure QTL 2103.413arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)5143069996166846814Rat
8694169Bw148Body weight QTL 14850.001body mass (VT:0001259)body weight gain (CMO:0000420)5128506074166875058Rat

Markers in Region
BF390121  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,045,904 - 166,046,066 (+)MAPPERmRatBN7.2
Rnor_6.05172,884,834 - 172,884,995NCBIRnor6.0
Rnor_5.05176,342,712 - 176,342,873UniSTSRnor5.0
RGSC_v3.45172,290,379 - 172,290,540UniSTSRGSC3.4
Celera5164,247,679 - 164,247,840UniSTS
RH 3.4 Map51157.1UniSTS
BE107998  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25166,010,567 - 166,010,750 (+)MAPPERmRatBN7.2
Rnor_6.05172,849,517 - 172,849,699NCBIRnor6.0
Rnor_5.05176,307,396 - 176,307,578UniSTSRnor5.0
RGSC_v3.45172,255,063 - 172,255,245UniSTSRGSC3.4
Celera5164,212,851 - 164,213,033UniSTS
RH 3.4 Map51157.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 42 3
Low 6 221 40 46
Below cutoff 15 18 63 57 24 24 29 82 63 12

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776128 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776130 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008776134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017593897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017603157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111376 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111378 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111383 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111388 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039111391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063261339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005505154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC130035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000068525   ⟹   ENSRNOP00000062897
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5165,979,899 - 166,046,071 (+)Ensembl
Rnor_6.0 Ensembl5172,825,072 - 172,858,053 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000097549   ⟹   ENSRNOP00000092255
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100074   ⟹   ENSRNOP00000081714
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)Ensembl
RefSeq Acc Id: XM_008764399   ⟹   XP_008762621
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,636 - 166,046,068 (+)NCBI
Rnor_6.05172,817,221 - 172,884,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764400   ⟹   XP_008762622
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,633 - 166,046,068 (+)NCBI
Rnor_6.05172,817,221 - 172,884,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764402   ⟹   XP_008762624
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,634 - 166,046,068 (+)NCBI
Rnor_6.05172,817,221 - 172,884,996 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764405   ⟹   XP_008762627
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,327,866 (+)NCBI
mRatBN7.25165,979,637 - 166,046,068 (+)NCBI
Rnor_6.05172,817,221 - 172,884,586 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008764406   ⟹   XP_008762628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,262,068 - 171,316,228 (+)NCBI
mRatBN7.25165,979,653 - 166,033,945 (+)NCBI
Rnor_6.05172,817,224 - 172,872,818 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017593895   ⟹   XP_017449384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,326,205 (+)NCBI
mRatBN7.25165,979,641 - 166,043,926 (+)NCBI
Rnor_6.05172,817,221 - 172,881,899 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039111375   ⟹   XP_038967303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,252,907 - 171,328,351 (+)NCBI
mRatBN7.25165,970,611 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111376   ⟹   XP_038967304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,634 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111378   ⟹   XP_038967306
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,634 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111379   ⟹   XP_038967307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,632 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111383   ⟹   XP_038967311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,328,351 (+)NCBI
mRatBN7.25165,979,638 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111385   ⟹   XP_038967313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,283,714 - 171,328,351 (+)NCBI
mRatBN7.25166,001,435 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111387   ⟹   XP_038967315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,292,891 - 171,328,351 (+)NCBI
mRatBN7.25166,010,608 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111388   ⟹   XP_038967316
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,295,419 - 171,328,351 (+)NCBI
mRatBN7.25166,013,135 - 166,046,068 (+)NCBI
RefSeq Acc Id: XM_039111391   ⟹   XP_038967319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,262,068 - 171,309,873 (+)NCBI
mRatBN7.25165,979,653 - 166,027,379 (+)NCBI
RefSeq Acc Id: XM_063261339   ⟹   XP_063117409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,262,057 - 171,311,229 (+)NCBI
RefSeq Acc Id: XR_005505153
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,327,729 (+)NCBI
mRatBN7.25165,979,640 - 166,045,445 (+)NCBI
RefSeq Acc Id: XR_005505154
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85171,261,186 - 171,326,210 (+)NCBI
mRatBN7.25165,979,642 - 166,043,926 (+)NCBI
RefSeq Acc Id: XP_008762621   ⟸   XM_008764399
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008762624   ⟸   XM_008764402
- Peptide Label: isoform X6
- UniProtKB: A0A8I5ZTH3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762622   ⟸   XM_008764400
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008762627   ⟸   XM_008764405
- Peptide Label: isoform X8
- UniProtKB: F1LW62 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008762628   ⟸   XM_008764406
- Peptide Label: isoform X14
- Sequence:
RefSeq Acc Id: XP_017449384   ⟸   XM_017593895
- Peptide Label: isoform X9
- Sequence:
Ensembl Acc Id: ENSRNOP00000062897   ⟸   ENSRNOT00000068525
RefSeq Acc Id: XP_038967303   ⟸   XM_039111375
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AGS2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038967307   ⟸   XM_039111379
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038967304   ⟸   XM_039111376
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038967306   ⟸   XM_039111378
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038967311   ⟸   XM_039111383
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038967319   ⟸   XM_039111391
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038967313   ⟸   XM_039111385
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038967315   ⟸   XM_039111387
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038967316   ⟸   XM_039111388
- Peptide Label: isoform X13
Ensembl Acc Id: ENSRNOP00000092255   ⟸   ENSRNOT00000097549
Ensembl Acc Id: ENSRNOP00000081714   ⟸   ENSRNOT00000100074
RefSeq Acc Id: XP_063117409   ⟸   XM_063261339
- Peptide Label: isoform X12
Protein Domains
MSP

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LW62-F1-model_v2 AlphaFold F1LW62 1-784 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2324110 AgrOrtholog
BioCyc Gene G2FUF-38927 BioCyc
Ensembl Genes ENSRNOG00000023627 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068525.5 UniProtKB/TrEMBL
  ENSRNOT00000097549.1 UniProtKB/TrEMBL
  ENSRNOT00000100074.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
  MSP_dom UniProtKB/TrEMBL
KEGG Report rno:100362748 UniProtKB/TrEMBL
NCBI Gene 100362748 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 74 UniProtKB/TrEMBL
  UNCHARACTERIZED UniProtKB/TrEMBL
PhenoGen Cfap74 PhenoGen
PROSITE MSP UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023627 RatGTEx
UniProt A0A8I5ZTH3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGS2 ENTREZGENE, UniProtKB/TrEMBL
  F1LW62 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2014-09-30 Cfap74  cilia and flagella associated protein 74  LOC100362748  hCG1647286-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-05-06 LOC100362748  hCG1647286-like      Symbol and Name status set to provisional 70820 PROVISIONAL