Cfap74 (cilia and flagella associated protein 74) - Rat Genome Database

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Gene: Cfap74 (cilia and flagella associated protein 74) Heterocephalus glaber
Analyze
Symbol: Cfap74
Name: cilia and flagella associated protein 74
RGD ID: 18915211
Description: ASSOCIATED WITH chromosome 1p36 deletion syndrome (ortholog); congenital myasthenic syndrome 8 (ortholog); dilated cardiomyopathy 1LL (ortholog); FOUND IN cytoplasm (ortholog); nucleus (ortholog); sperm flagellum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: cilia- and flagella-associated protein 74
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,882,658 - 7,918,521 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

Genomics

Comparative Map Data
Cfap74
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248187,882,658 - 7,918,521 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
CFAP74
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811,921,957 - 2,003,786 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11,921,951 - 2,003,837 (-)EnsemblGRCh38hg38GRCh38
GRCh3711,853,396 - 1,935,225 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3611,874,612 - 1,925,136 (-)NCBINCBI36Build 36hg18NCBI36
Celera1658,422 - 708,504 (+)NCBICelera
Cytogenetic Map1p36.33NCBI
HuRef11,161,883 - 1,212,506 (-)NCBIHuRef
CHM1_111,871,902 - 1,922,477 (-)NCBICHM1_1
T2T-CHM13v2.011,356,370 - 1,439,078 (-)NCBIT2T-CHM13v2.0
Cfap74
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394155,493,647 - 155,551,280 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4155,493,647 - 155,551,280 (+)EnsemblGRCm39 Ensembl
GRCm384155,392,099 - 155,466,823 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4155,409,190 - 155,466,823 (+)EnsemblGRCm38mm10GRCm38
MGSCv374154,783,299 - 154,817,219 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364154,253,058 - 154,286,910 (+)NCBIMGSCv36mm8
Celera4157,683,449 - 157,718,128 (+)NCBICelera
Cytogenetic Map4E2NCBI
cM Map486.17NCBI
Cfap74
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85171,252,907 - 171,328,351 (+)NCBIGRCr8
mRatBN7.25165,970,611 - 166,046,068 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5165,979,805 - 166,046,071 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.05172,817,221 - 172,884,996 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5172,825,072 - 172,858,053 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05176,277,036 - 176,343,438 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45172,232,911 - 172,291,211 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5164,180,632 - 164,247,841 (+)NCBICelera
Cytogenetic Map5q36NCBI
Cfap74
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554869,057,030 - 9,107,600 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554869,056,836 - 9,107,572 (+)NCBIChiLan1.0ChiLan1.0
CFAP74
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21226,260,204 - 226,353,608 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11224,918,288 - 225,009,476 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01627,950 - 715,982 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111,785,210 - 1,869,228 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11,785,550 - 1,856,062 (-)Ensemblpanpan1.1panPan2
CFAP74
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1556,909,092 - 56,970,980 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl556,909,486 - 56,961,903 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha556,984,376 - 57,048,112 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0557,110,833 - 57,174,618 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl557,111,227 - 57,185,751 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1557,101,397 - 57,150,685 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0556,993,905 - 57,057,613 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0557,383,747 - 57,447,438 (-)NCBIUU_Cfam_GSD_1.0
Cfap74
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505828,001,051 - 28,024,450 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049367371,416,475 - 1,465,984 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP74
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl663,976,346 - 64,024,562 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1663,976,011 - 64,038,899 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2658,483,738 - 58,545,088 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP74
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.120129,555,060 - 129,626,465 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605433,946,381 - 34,022,755 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000024817   ⟹   ENSHGLP00000024595
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248187,882,658 - 7,918,521 (+)Ensembl
Ensembl Acc Id: ENSHGLT00000024818   ⟹   ENSHGLP00000024596
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248187,882,658 - 7,918,521 (+)Ensembl
RefSeq Acc Id: XM_013065180   ⟹   XP_012920634
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBI
RefSeq Acc Id: XM_021243415   ⟹   XP_021099074
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBI
RefSeq Acc Id: XM_021243416   ⟹   XP_021099075
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,739 - 7,916,762 (+)NCBI
RefSeq Acc Id: XM_021243417   ⟹   XP_021099076
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBI
RefSeq Acc Id: XM_021243418   ⟹   XP_021099077
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBI
RefSeq Acc Id: XM_021243419   ⟹   XP_021099078
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,727 - 7,916,762 (+)NCBI
RefSeq Acc Id: XM_021243420   ⟹   XP_021099079
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,727 - 7,916,759 (+)NCBI
RefSeq Acc Id: XM_021243421   ⟹   XP_021099080
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,742 - 7,916,762 (+)NCBI
RefSeq Acc Id: XM_021243422   ⟹   XP_021099081
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,744 - 7,916,762 (+)NCBI
RefSeq Acc Id: XM_021243423   ⟹   XP_021099082
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,727 - 7,916,756 (+)NCBI
RefSeq Acc Id: XM_021243424   ⟹   XP_021099083
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248187,876,727 - 7,915,302 (+)NCBI
RefSeq Acc Id: XP_021099074   ⟸   XM_021243415
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RSP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099076   ⟸   XM_021243417
- Peptide Label: isoform X2
- UniProtKB: A0AAX6RQM0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099077   ⟸   XM_021243418
- Peptide Label: isoform X4
- UniProtKB: A0AAX6RR03 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099078   ⟸   XM_021243419
- Peptide Label: isoform X5
- UniProtKB: A0AAX6RQK2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_012920634   ⟸   XM_013065180
- Peptide Label: isoform X3
- UniProtKB: A0AAX6QH72 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099079   ⟸   XM_021243420
- Peptide Label: isoform X6
- UniProtKB: A0AAX6RRD6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099082   ⟸   XM_021243423
- Peptide Label: isoform X8
- UniProtKB: A0AAX6RTK4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099083   ⟸   XM_021243424
- Peptide Label: isoform X9
- UniProtKB: A0AAX6RS14 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099075   ⟸   XM_021243416
- Peptide Label: isoform X1
- UniProtKB: A0AAX6RSP8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099080   ⟸   XM_021243421
- Peptide Label: isoform X7
- UniProtKB: A0AAX6RSM9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021099081   ⟸   XM_021243422
- Peptide Label: isoform X7
- UniProtKB: A0AAX6RSM9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000024596   ⟸   ENSHGLT00000024818
Ensembl Acc Id: ENSHGLP00000024595   ⟸   ENSHGLT00000024817


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000017535 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000024817 ENTREZGENE
  ENSHGLT00000024818 ENTREZGENE
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro Ig-like_fold UniProtKB/TrEMBL
NCBI Gene Cfap74 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 74 UniProtKB/TrEMBL
  CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 74 UniProtKB/TrEMBL
UniProt A0AAX6QH72 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RQK2 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RQM0 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RR03 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RRD6 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RS14 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RSM9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RSP8 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6RTK4 ENTREZGENE, UniProtKB/TrEMBL